RNA–Protein interactions for RNA: ENST00000389040.9

VPS53-202, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best)

Gene VPS53, Length 1,903 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-202ENST00000389040 HOXA10P31260 410 aaPredicted RBP12.72□□□□□ -0.37
VPS53-202ENST00000389040 NUTM1Q86Y26 1132 aa12.72□□□□□ -0.37
VPS53-202ENST00000389040 TMEM57Q8N5G2 664 aa12.72□□□□□ -0.37
VPS53-202ENST00000389040 FAM89AQ96GI7 184 aa12.72□□□□□ -0.37
VPS53-202ENST00000389040 MASTLQ96GX5 879 aa12.72□□□□□ -0.37
VPS53-202ENST00000389040 NOP58Q9Y2X3 529 aaKnown RBP12.72□□□□□ -0.37
VPS53-202ENST00000389040 FAM177BA6PVY3 158 aa12.71□□□□□ -0.37
VPS53-202ENST00000389040 C8orf34Q49A92 452 aa12.71□□□□□ -0.37
VPS53-202ENST00000389040 CNKSR1Q969H4 720 aa12.71□□□□□ -0.37
VPS53-202ENST00000389040 PIM2Q9P1W9 311 aa12.71□□□□□ -0.37
VPS53-202ENST00000389040 ARFGEF2Q9Y6D5 1785 aa12.71□□□□□ -0.38
VPS53-202ENST00000389040 C2CD5Q86YS7 1000 aa12.7□□□□□ -0.38
VPS53-202ENST00000389040 GNAI3P08754 354 aa12.7□□□□□ -0.38
VPS53-202ENST00000389040 KCNA3P22001 575 aa12.7□□□□□ -0.38
VPS53-202ENST00000389040 CASP7P55210 303 aa12.7□□□□□ -0.38
VPS53-202ENST00000389040 GRIPAP1Q4V328 841 aa12.7□□□□□ -0.38
VPS53-202ENST00000389040 RPGRQ92834 1020 aaKnown RBP12.7□□□□□ -0.38
VPS53-202ENST00000389040 CRAMP1Q96RY5 1269 aa12.7□□□□□ -0.38
VPS53-202ENST00000389040 DCAF8L1A6NGE4 600 aa12.69□□□□□ -0.38
VPS53-202ENST00000389040 DPEP1P16444 411 aa12.69□□□□□ -0.38
VPS53-202ENST00000389040 HDAC1Q13547 482 aaPredicted RBP12.69□□□□□ -0.38
VPS53-202ENST00000389040 CCDC152Q4G0S7 254 aa12.69□□□□□ -0.38
VPS53-202ENST00000389040 UBE3BQ7Z3V4 1068 aa12.69□□□□□ -0.38
VPS53-202ENST00000389040 TMC4Q7Z404 712 aa12.69□□□□□ -0.38
VPS53-202ENST00000389040 KLHL34Q8N239 644 aa12.69□□□□□ -0.38
VPS53-202ENST00000389040 RBM17Q96I25 401 aaKnown RBP12.69□□□□□ -0.38
VPS53-202ENST00000389040 USP44Q9H0E7 712 aa12.69□□□□□ -0.38
VPS53-202ENST00000389040 ZBTB40Q9NUA8 1239 aa12.69□□□□□ -0.38
VPS53-202ENST00000389040 ANKRD36CQ5JPF3 1778 aa12.69□□□□□ -0.38
VPS53-202ENST00000389040 A0A0G2JLW4 131 aa12.68□□□□□ -0.38
VPS53-202ENST00000389040 TTLL6Q8N841 843 aa12.68□□□□□ -0.38
VPS53-202ENST00000389040 ABCC12Q96J65 1359 aa12.68□□□□□ -0.38
VPS53-202ENST00000389040 KIF13BQ9NQT8 1826 aa12.68□□□□□ -0.38
VPS53-202ENST00000389040 BBOX1O75936 387 aa12.68□□□□□ -0.38
VPS53-202ENST00000389040 CSF1RP07333 972 aa12.68□□□□□ -0.38
VPS53-202ENST00000389040 HCLS1P14317 486 aaPredicted RBP12.68□□□□□ -0.38
VPS53-202ENST00000389040 DALRD3Q5D0E6 543 aaKnown RBP12.68□□□□□ -0.38
VPS53-202ENST00000389040 SOGA3Q5TF21 947 aa12.68□□□□□ -0.38
VPS53-202ENST00000389040 RTL9Q8NET4 1388 aa12.68□□□□□ -0.38
VPS53-202ENST00000389040 CTSWP56202 376 aa12.67□□□□□ -0.38
VPS53-202ENST00000389040 CC2D2BQ6DHV5 1058 aa12.67□□□□□ -0.38
VPS53-202ENST00000389040 DDX46Q7L014 1031 aaKnown RBP12.67□□□□□ -0.38
VPS53-202ENST00000389040 NLGN2Q8NFZ4 835 aa12.67□□□□□ -0.38
VPS53-202ENST00000389040 ZBTB47Q9UFB7 747 aaPredicted RBP12.67□□□□□ -0.38
VPS53-202ENST00000389040 GRIN3BO60391 1043 aa12.66□□□□□ -0.38
VPS53-202ENST00000389040 UBTFL1P0CB47 393 aaPredicted RBP12.66□□□□□ -0.38
VPS53-202ENST00000389040 SYNE4Q8N205 404 aa12.66□□□□□ -0.38
VPS53-202ENST00000389040 TTLL11Q8NHH1 800 aa12.66□□□□□ -0.38
VPS53-202ENST00000389040 AFDNP55196 1824 aaKnown RBP12.66□□□□□ -0.38
VPS53-202ENST00000389040 NBPF7P0C2Y1 421 aaPredicted RBP12.66□□□□□ -0.38
VPS53-202ENST00000389040 CHRNA5P30532 468 aa12.66□□□□□ -0.38
VPS53-202ENST00000389040 CCDC24Q8N4L8 307 aa12.66□□□□□ -0.38
VPS53-202ENST00000389040 ZNF622Q969S3 477 aaKnown RBP eCLIP12.66□□□□□ -0.388e-8■■■■□ 21.7
VPS53-202ENST00000389040 RABL6Q3YEC7 729 aaPredicted RBP12.65□□□□□ -0.38
VPS53-202ENST00000389040 RTL5Q5HYW3 569 aaPredicted RBP12.65□□□□□ -0.38
VPS53-202ENST00000389040 CDC5LQ99459 802 aaKnown RBP12.65□□□□□ -0.38
VPS53-202ENST00000389040 TMX4Q9H1E5 349 aaPredicted RBP12.65□□□□□ -0.38
VPS53-202ENST00000389040 ZBTB7BO15156 539 aaPredicted RBP12.64□□□□□ -0.39
VPS53-202ENST00000389040 FOXO4P98177 505 aa12.64□□□□□ -0.39
VPS53-202ENST00000389040 GRAPQ13588 217 aa12.64□□□□□ -0.39
VPS53-202ENST00000389040 GRAPLQ8TC17 118 aaPredicted RBP12.64□□□□□ -0.39
VPS53-202ENST00000389040 GNAI2P04899 355 aa12.63□□□□□ -0.39
VPS53-202ENST00000389040 RPS8P62241 208 aaKnown RBP12.63□□□□□ -0.39
VPS53-202ENST00000389040 IFIT5Q13325 482 aaKnown RBP12.63□□□□□ -0.39
VPS53-202ENST00000389040 PRPF40BQ6NWY9 871 aaKnown RBP12.63□□□□□ -0.39
VPS53-202ENST00000389040 C3orf67Q6ZVT6 689 aa12.63□□□□□ -0.39
VPS53-202ENST00000389040 DDRGK1Q96HY6 314 aa12.63□□□□□ -0.39
VPS53-202ENST00000389040 HOXD11P31277 338 aaPredicted RBP12.62□□□□□ -0.39
VPS53-202ENST00000389040 GPR162Q16538 588 aa12.62□□□□□ -0.39
VPS53-202ENST00000389040 CCDC57Q2TAC2 916 aa12.62□□□□□ -0.39
VPS53-202ENST00000389040 SMC5Q8IY18 1101 aa12.62□□□□□ -0.39
VPS53-202ENST00000389040 RTKN2Q8IZC4 609 aa12.62□□□□□ -0.39
VPS53-202ENST00000389040 C7orf43Q8WVR3 580 aa12.62□□□□□ -0.39
VPS53-202ENST00000389040 ANKRD18BA2A2Z9 1011 aa12.62□□□□□ -0.39
VPS53-202ENST00000389040 MTX1Q13505 466 aa12.62□□□□□ -0.39
VPS53-202ENST00000389040 LMBR1LQ6UX01 489 aa12.62□□□□□ -0.39
VPS53-202ENST00000389040 SP8Q8IXZ3 490 aa12.62□□□□□ -0.39
VPS53-202ENST00000389040 JARID2Q92833 1246 aaPredicted RBP12.62□□□□□ -0.39
VPS53-202ENST00000389040 KAZALD1Q96I82 304 aa12.62□□□□□ -0.39
VPS53-202ENST00000389040 SUCLG2Q96I99 432 aa12.62□□□□□ -0.39
VPS53-202ENST00000389040 MEIS3Q99687 375 aa12.62□□□□□ -0.39
VPS53-202ENST00000389040 FBXO3Q9UK99 471 aa12.62□□□□□ -0.39
VPS53-202ENST00000389040 BCS1LQ9Y276 419 aa12.62□□□□□ -0.39
VPS53-202ENST00000389040 ATP6V0A2Q9Y487 856 aa12.62□□□□□ -0.39
VPS53-202ENST00000389040 ANKRD18AQ8IVF6 992 aa12.61□□□□□ -0.39
VPS53-202ENST00000389040 BICC1Q9H694 974 aaKnown RBP12.61□□□□□ -0.39
VPS53-202ENST00000389040 GREM2Q9H772 168 aa12.61□□□□□ -0.39
VPS53-202ENST00000389040 BSDC1Q9NW68 430 aaPredicted RBP12.61□□□□□ -0.39
VPS53-202ENST00000389040 PPEF1O14829 653 aaPredicted RBP12.6□□□□□ -0.39
VPS53-202ENST00000389040 ITGA6P23229 1130 aa12.6□□□□□ -0.39
VPS53-202ENST00000389040 IGHMBP2P38935 993 aaKnown RBP12.6□□□□□ -0.39
VPS53-202ENST00000389040 VPS33BQ9H267 617 aa12.6□□□□□ -0.39
VPS53-202ENST00000389040 CCDC93Q567U6 631 aa12.6□□□□□ -0.39
VPS53-202ENST00000389040 N4BP2Q86UW6 1770 aaPredicted RBP12.59□□□□□ -0.39
VPS53-202ENST00000389040 ANKRD31Q8N7Z5 1873 aa12.59□□□□□ -0.39
VPS53-202ENST00000389040 EPHA10Q5JZY3 1008 aa12.59□□□□□ -0.39
VPS53-202ENST00000389040 ANKRD44Q8N8A2 993 aa12.59□□□□□ -0.39
VPS53-202ENST00000389040 MPHOSPH8Q99549 860 aa12.59□□□□□ -0.39
VPS53-202ENST00000389040 LRRFIP2Q9Y608 721 aaKnown RBP12.59□□□□□ -0.39
VPS53-202ENST00000389040 LTBP3Q9NS15 1303 aa12.59□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 59.8 ms