RNA–Protein interactions for RNA: ENST00000379446.9

NEDD9-202, Transcript of neural precursor cell expressed, developmentally down-regulated 9, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene NEDD9, Length 4,536 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD9-202ENST00000379446 LIG1P18858 919 aa7.74□□□□□ -1.17
NEDD9-202ENST00000379446 RPS8P62241 208 aaKnown RBP7.74□□□□□ -1.17
NEDD9-202ENST00000379446 PPP4R3AQ6IN85 833 aa7.74□□□□□ -1.17
NEDD9-202ENST00000379446 PRDM5Q9NQX1 630 aaPredicted RBP7.74□□□□□ -1.17
NEDD9-202ENST00000379446 CHPF2Q9P2E5 772 aa7.74□□□□□ -1.17
NEDD9-202ENST00000379446 IREB2P48200 963 aaKnown RBP7.74□□□□□ -1.17
NEDD9-202ENST00000379446 CC2D2BQ6DHV5 1058 aa7.74□□□□□ -1.17
NEDD9-202ENST00000379446 TTLL5Q6EMB2 1281 aa7.74□□□□□ -1.17
NEDD9-202ENST00000379446 ERVV-2B6SEH9 535 aa7.74□□□□□ -1.17
NEDD9-202ENST00000379446 TRIM27P14373 513 aa7.74□□□□□ -1.17
NEDD9-202ENST00000379446 LMBR1LQ6UX01 489 aa7.74□□□□□ -1.17
NEDD9-202ENST00000379446 DPP9Q86TI2 863 aa7.74□□□□□ -1.17
NEDD9-202ENST00000379446 NAPBQ9H115 298 aa7.74□□□□□ -1.17
NEDD9-202ENST00000379446 IL1RAPL2Q9NP60 686 aa7.74□□□□□ -1.17
NEDD9-202ENST00000379446 SCNN1DP51172 638 aa7.73□□□□□ -1.17
NEDD9-202ENST00000379446 MTHFSDQ2M296 383 aaKnown RBP7.73□□□□□ -1.17
NEDD9-202ENST00000379446 MICALL1Q8N3F8 863 aa7.73□□□□□ -1.17
NEDD9-202ENST00000379446 TTF2Q9UNY4 1162 aaKnown RBP7.73□□□□□ -1.17
NEDD9-202ENST00000379446 PREX2Q70Z35 1606 aa7.73□□□□□ -1.17
NEDD9-202ENST00000379446 SP4Q02446 784 aa7.73□□□□□ -1.17
NEDD9-202ENST00000379446 NAA16Q6N069 864 aaPredicted RBP7.73□□□□□ -1.17
NEDD9-202ENST00000379446 MASTLQ96GX5 879 aa7.73□□□□□ -1.17
NEDD9-202ENST00000379446 ZBED2Q9BTP6 218 aa7.73□□□□□ -1.17
NEDD9-202ENST00000379446 CHMP5Q9NZZ3 219 aa7.73□□□□□ -1.17
NEDD9-202ENST00000379446 HTATSF1O43719 755 aaKnown RBP7.73□□□□□ -1.17
NEDD9-202ENST00000379446 FOXD4L5Q5VV16 416 aaPredicted RBP7.73□□□□□ -1.17
NEDD9-202ENST00000379446 FOXD4L4Q8WXT5 416 aaPredicted RBP7.73□□□□□ -1.17
NEDD9-202ENST00000379446 ZNF496Q96IT1 587 aaPredicted RBP7.73□□□□□ -1.17
NEDD9-202ENST00000379446 ZBTB1Q9Y2K1 713 aa7.73□□□□□ -1.17
NEDD9-202ENST00000379446 SAMM50Q9Y512 469 aa7.73□□□□□ -1.17
NEDD9-202ENST00000379446 NINLQ9Y2I6 1382 aa7.73□□□□□ -1.17
NEDD9-202ENST00000379446 ZBBXA8MT70 800 aa7.72□□□□□ -1.17
NEDD9-202ENST00000379446 SSBP05455 408 aaKnown RBP eCLIP7.72□□□□□ -1.17
NEDD9-202ENST00000379446 DPEP1P16444 411 aa7.72□□□□□ -1.17
NEDD9-202ENST00000379446 HIBADHP31937 336 aaKnown RBP7.72□□□□□ -1.17
NEDD9-202ENST00000379446 BCAMP50895 628 aa7.72□□□□□ -1.17
NEDD9-202ENST00000379446 ATP2B3Q16720 1220 aa7.72□□□□□ -1.17
NEDD9-202ENST00000379446 SMIM5Q71RC9 77 aa7.72□□□□□ -1.17
NEDD9-202ENST00000379446 DHX37Q8IY37 1157 aaKnown RBP7.72□□□□□ -1.17
NEDD9-202ENST00000379446 CPXCR1Q8N123 301 aa7.72□□□□□ -1.17
NEDD9-202ENST00000379446 CDK5RAP3Q96JB5 506 aa7.72□□□□□ -1.17
NEDD9-202ENST00000379446 SEC63Q9UGP8 760 aaKnown RBP7.72□□□□□ -1.17
NEDD9-202ENST00000379446 POLR3AO14802 1390 aaPredicted RBP7.72□□□□□ -1.17
NEDD9-202ENST00000379446 CACNA1GO43497 2377 aa7.72□□□□□ -1.17
NEDD9-202ENST00000379446 TSPY2A6NKD2 308 aa7.72□□□□□ -1.17
NEDD9-202ENST00000379446 CHST3Q7LGC8 479 aa7.72□□□□□ -1.17
NEDD9-202ENST00000379446 PNMA8AQ86V59 439 aaPredicted RBP7.72□□□□□ -1.17
NEDD9-202ENST00000379446 TRMT2AQ8IZ69 625 aaKnown RBP7.72□□□□□ -1.17
NEDD9-202ENST00000379446 PPM1EQ8WY54 764 aa7.72□□□□□ -1.17
NEDD9-202ENST00000379446 CRNKL1Q9BZJ0 848 aaKnown RBP7.72□□□□□ -1.17
NEDD9-202ENST00000379446 NPR1P16066 1061 aa7.72□□□□□ -1.17
NEDD9-202ENST00000379446 CYP7A1P22680 504 aa7.72□□□□□ -1.17
NEDD9-202ENST00000379446 TAF12Q16514 161 aa7.72□□□□□ -1.17
NEDD9-202ENST00000379446 ARHGEF25Q86VW2 580 aa7.72□□□□□ -1.17
NEDD9-202ENST00000379446 SMC1BQ8NDV3 1235 aa7.72□□□□□ -1.17
NEDD9-202ENST00000379446 SLC52A2Q9HAB3 445 aa7.72□□□□□ -1.17
NEDD9-202ENST00000379446 CAMSAP1Q5T5Y3 1602 aa7.72□□□□□ -1.17
NEDD9-202ENST00000379446 INSRP06213 1382 aa7.72□□□□□ -1.17
NEDD9-202ENST00000379446 PLEKHG3A1L390 1219 aa7.71□□□□□ -1.17
NEDD9-202ENST00000379446 NBPF11Q86T75 865 aa7.71□□□□□ -1.17
NEDD9-202ENST00000379446 CCDC47Q96A33 483 aaKnown RBP7.71□□□□□ -1.17
NEDD9-202ENST00000379446 PIK3R4Q99570 1358 aa7.71□□□□□ -1.17
NEDD9-202ENST00000379446 ABCC1P33527 1531 aa7.71□□□□□ -1.17
NEDD9-202ENST00000379446 ARAP3Q8WWN8 1544 aa7.71□□□□□ -1.17
NEDD9-202ENST00000379446 KIAA2012Q0VF49 1180 aa7.71□□□□□ -1.17
NEDD9-202ENST00000379446 ILDR2Q71H61 639 aa7.71□□□□□ -1.17
NEDD9-202ENST00000379446 TBC1D32Q96NH3 1257 aa7.71□□□□□ -1.17
NEDD9-202ENST00000379446 LGR6Q9HBX8 967 aa7.71□□□□□ -1.17
NEDD9-202ENST00000379446 CDC42BPBQ9Y5S2 1711 aa7.71□□□□□ -1.17
NEDD9-202ENST00000379446 MAST3O60307 1309 aa7.71□□□□□ -1.18
NEDD9-202ENST00000379446 RPS6KA4O75676 772 aa7.71□□□□□ -1.18
NEDD9-202ENST00000379446 TEX11Q8IYF3 940 aa7.71□□□□□ -1.18
NEDD9-202ENST00000379446 SYNE4Q8N205 404 aa7.71□□□□□ -1.18
NEDD9-202ENST00000379446 CFAP74Q9C0B2 1584 aa7.71□□□□□ -1.18
NEDD9-202ENST00000379446 CCDC69A6NI79 296 aa7.71□□□□□ -1.18
NEDD9-202ENST00000379446 MAP4K4O95819 1239 aaPredicted RBP7.71□□□□□ -1.18
NEDD9-202ENST00000379446 PLCG2P16885 1265 aa7.71□□□□□ -1.18
NEDD9-202ENST00000379446 MFSD14BQ5SR56 506 aa7.71□□□□□ -1.18
NEDD9-202ENST00000379446 ROBO2Q9HCK4 1378 aa7.71□□□□□ -1.18
NEDD9-202ENST00000379446 PHKG2P15735 406 aa7.7□□□□□ -1.18
NEDD9-202ENST00000379446 LMNB1P20700 586 aa7.7□□□□□ -1.18
NEDD9-202ENST00000379446 MRE11P49959 708 aa7.7□□□□□ -1.18
NEDD9-202ENST00000379446 GBP4Q96PP9 640 aa7.7□□□□□ -1.18
NEDD9-202ENST00000379446 SH2D4AQ9H788 454 aa7.7□□□□□ -1.18
NEDD9-202ENST00000379446 GRPEL1Q9HAV7 217 aa7.7□□□□□ -1.18
NEDD9-202ENST00000379446 ERVK-7P63135 1459 aa7.7□□□□□ -1.18
NEDD9-202ENST00000379446 MCM4P33991 863 aa7.7□□□□□ -1.18
NEDD9-202ENST00000379446 AAMPQ13685 434 aa7.7□□□□□ -1.18
NEDD9-202ENST00000379446 FOXD4L6Q3SYB3 417 aaPredicted RBP7.7□□□□□ -1.18
NEDD9-202ENST00000379446 FOXD4L3Q6VB84 417 aaPredicted RBP7.7□□□□□ -1.18
NEDD9-202ENST00000379446 FNBP4Q8N3X1 1017 aaPredicted RBP7.7□□□□□ -1.18
NEDD9-202ENST00000379446 CCDC8Q9H0W5 538 aaPredicted RBP7.7□□□□□ -1.18
NEDD9-202ENST00000379446 NPC1L1Q9UHC9 1359 aa7.7□□□□□ -1.18
NEDD9-202ENST00000379446 FLIIQ13045 1269 aa7.7□□□□□ -1.18
NEDD9-202ENST00000379446 TAF1CQ15572 869 aaPredicted RBP7.7□□□□□ -1.18
NEDD9-202ENST00000379446 CNTROBQ8N137 903 aa7.7□□□□□ -1.18
NEDD9-202ENST00000379446 ARHGEF1Q92888 912 aaKnown RBP7.7□□□□□ -1.18
NEDD9-202ENST00000379446 COA7Q96BR5 231 aa7.7□□□□□ -1.18
NEDD9-202ENST00000379446 UTP3Q9NQZ2 479 aaKnown RBP eCLIP7.7□□□□□ -1.18
NEDD9-202ENST00000379446 POLKQ9UBT6 870 aa7.7□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 85 ms