RNA–Protein interactions for RNA: ENST00000376854.5

C9orf40-201, Transcript of chromosome 9 open reading frame 40, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene C9orf40, Length 2,327 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf40-201ENST00000376854 EDC3Q96F86 508 aaKnown RBP30.12■■■□□ 2.41
C9orf40-201ENST00000376854 ALDH8A1Q9H2A2 487 aaPredicted RBP30.12■■■□□ 2.41
C9orf40-201ENST00000376854 COPRSQ9NQ92 184 aa30.12■■■□□ 2.41
C9orf40-201ENST00000376854 JCADQ9P266 1359 aa30.11■■■□□ 2.41
C9orf40-201ENST00000376854 KRT85P78386 507 aa30.11■■■□□ 2.41
C9orf40-201ENST00000376854 USP16Q9Y5T5 823 aa30.11■■■□□ 2.41
C9orf40-201ENST00000376854 TOB2Q14106 344 aaPredicted RBP30.1■■■□□ 2.41
C9orf40-201ENST00000376854 JARID2Q92833 1246 aaPredicted RBP30.1■■■□□ 2.41
C9orf40-201ENST00000376854 KDM4AO75164 1064 aa30.1■■■□□ 2.41
C9orf40-201ENST00000376854 TAF5LO75529 589 aa30.1■■■□□ 2.41
C9orf40-201ENST00000376854 TSGA10IPQ3SY00 556 aa30.1■■■□□ 2.41
C9orf40-201ENST00000376854 FERMT3Q86UX7 667 aa30.1■■■□□ 2.41
C9orf40-201ENST00000376854 MPNDQ8N594 471 aa30.1■■■□□ 2.41
C9orf40-201ENST00000376854 DBNLQ9UJU6 430 aaKnown RBP30.1■■■□□ 2.41
C9orf40-201ENST00000376854 ATP5JP18859 108 aa30.09■■■□□ 2.41
C9orf40-201ENST00000376854 RFX5P48382 616 aaPredicted RBP30.08■■■□□ 2.41
C9orf40-201ENST00000376854 TNNI3KQ59H18 835 aa30.08■■■□□ 2.41
C9orf40-201ENST00000376854 LRP10Q7Z4F1 713 aa30.08■■■□□ 2.41
C9orf40-201ENST00000376854 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP30.08■■■□□ 2.41
C9orf40-201ENST00000376854 FPGT-TNNI3KV9GXZ4 949 aa30.08■■■□□ 2.41
C9orf40-201ENST00000376854 TNS3Q68CZ2 1445 aa30.08■■■□□ 2.41
C9orf40-201ENST00000376854 SNRPA1P09661 255 aaKnown RBP30.08■■■□□ 2.41
C9orf40-201ENST00000376854 PTPN12Q05209 780 aaKnown RBP30.08■■■□□ 2.41
C9orf40-201ENST00000376854 TFCP2Q12800 502 aa30.08■■■□□ 2.41
C9orf40-201ENST00000376854 TTC6Q86TZ1 520 aa30.08■■■□□ 2.41
C9orf40-201ENST00000376854 TTC5Q8N0Z6 440 aa30.07■■■□□ 2.4
C9orf40-201ENST00000376854 DCCP43146 1447 aa30.06■■■□□ 2.4
C9orf40-201ENST00000376854 UQCRHLA0A096LP55 91 aa30.06■■■□□ 2.4
C9orf40-201ENST00000376854 UQCRHP07919 91 aa30.06■■■□□ 2.4
C9orf40-201ENST00000376854 UBE3BQ7Z3V4 1068 aa30.06■■■□□ 2.4
C9orf40-201ENST00000376854 ZNF830Q96NB3 372 aaPredicted RBP30.06■■■□□ 2.4
C9orf40-201ENST00000376854 USPL1Q5W0Q7 1092 aa30.06■■■□□ 2.4
C9orf40-201ENST00000376854 STK3Q13188 491 aa30.05■■■□□ 2.4
C9orf40-201ENST00000376854 FAM173BQ6P4H8 233 aa30.05■■■□□ 2.4
C9orf40-201ENST00000376854 DCAF5Q96JK2 942 aa30.05■■■□□ 2.4
C9orf40-201ENST00000376854 ELP1O95163 1332 aa30.05■■■□□ 2.4
C9orf40-201ENST00000376854 KRT32Q14532 448 aa30.04■■■□□ 2.4
C9orf40-201ENST00000376854 RABL6Q3YEC7 729 aaPredicted RBP30.04■■■□□ 2.4
C9orf40-201ENST00000376854 CADPS2Q86UW7 1296 aa30.04■■■□□ 2.4
C9orf40-201ENST00000376854 SPATA31A3Q5VYP0 1347 aa30.04■■■□□ 2.4
C9orf40-201ENST00000376854 COL15A1P39059 1388 aa30.03■■■□□ 2.4
C9orf40-201ENST00000376854 CCDC192P0DO97 292 aa30.03■■■□□ 2.4
C9orf40-201ENST00000376854 PLCB2Q00722 1185 aa30.03■■■□□ 2.4
C9orf40-201ENST00000376854 SASS6Q6UVJ0 657 aa30.03■■■□□ 2.4
C9orf40-201ENST00000376854 NDUFB9Q9Y6M9 179 aa30.03■■■□□ 2.4
C9orf40-201ENST00000376854 HSPA2P54652 639 aa30.02■■■□□ 2.4
C9orf40-201ENST00000376854 GLIPR1L2Q4G1C9 344 aa30.02■■■□□ 2.4
C9orf40-201ENST00000376854 FMNL2Q96PY5 1086 aa30.02■■■□□ 2.4
C9orf40-201ENST00000376854 DNAJC2Q99543 621 aaKnown RBP30.02■■■□□ 2.4
C9orf40-201ENST00000376854 CHMP3Q9Y3E7 222 aa30.02■■■□□ 2.4
C9orf40-201ENST00000376854 ATP5J2-PTCD1G3V325 749 aa30.01■■■□□ 2.4
C9orf40-201ENST00000376854 PTCD1O75127 700 aaKnown RBP30.01■■■□□ 2.4
C9orf40-201ENST00000376854 PIBF1Q8WXW3 757 aa30.01■■■□□ 2.4
C9orf40-201ENST00000376854 PDCL3Q9H2J4 239 aa30.01■■■□□ 2.4
C9orf40-201ENST00000376854 TTC12Q9H892 705 aaPredicted RBP30.01■■■□□ 2.4
C9orf40-201ENST00000376854 A0A087WZG4 1122 aa30.01■■■□□ 2.39
C9orf40-201ENST00000376854 NEK1Q96PY6 1258 aa30.01■■■□□ 2.39
C9orf40-201ENST00000376854 DBNDD2Q9BQY9 259 aa30■■■□□ 2.39
C9orf40-201ENST00000376854 SCAND2PQ9GZW5 306 aaPredicted RBP30■■■□□ 2.39
C9orf40-201ENST00000376854 LIG1P18858 919 aa30■■■□□ 2.39
C9orf40-201ENST00000376854 RBM10P98175 930 aaKnown RBP30■■■□□ 2.39
C9orf40-201ENST00000376854 NUP62CLQ9H1M0 184 aa30■■■□□ 2.39
C9orf40-201ENST00000376854 RFX7Q2KHR2 1363 aa30■■■□□ 2.39
C9orf40-201ENST00000376854 CABP4P57796 275 aa29.99■■■□□ 2.39
C9orf40-201ENST00000376854 CCDC129Q6ZRS4 1044 aa29.99■■■□□ 2.39
C9orf40-201ENST00000376854 U3KPZ7 1027 aaPredicted RBP29.99■■■□□ 2.39
C9orf40-201ENST00000376854 ZNF609O15014 1411 aa29.99■■■□□ 2.39
C9orf40-201ENST00000376854 ABCC6O95255 1503 aa29.99■■■□□ 2.39
C9orf40-201ENST00000376854 AP5Z1O43299 807 aa29.98■■■□□ 2.39
C9orf40-201ENST00000376854 CHGBP05060 677 aa29.98■■■□□ 2.39
C9orf40-201ENST00000376854 MAP3K11Q16584 847 aa29.98■■■□□ 2.39
C9orf40-201ENST00000376854 SPATA32Q96LK8 384 aa29.98■■■□□ 2.39
C9orf40-201ENST00000376854 HAUS7Q99871 368 aa29.98■■■□□ 2.39
C9orf40-201ENST00000376854 GTF3C6Q969F1 213 aa29.97■■■□□ 2.39
C9orf40-201ENST00000376854 TFIP11Q9UBB9 837 aaKnown RBP29.97■■■□□ 2.39
C9orf40-201ENST00000376854 PKD1L3Q7Z443 1732 aa29.97■■■□□ 2.39
C9orf40-201ENST00000376854 MCMDC2Q4G0Z9 681 aa29.97■■■□□ 2.39
C9orf40-201ENST00000376854 DNTTIP2Q5QJE6 756 aaKnown RBP29.97■■■□□ 2.39
C9orf40-201ENST00000376854 SEC62Q99442 399 aaKnown RBP29.97■■■□□ 2.39
C9orf40-201ENST00000376854 GOLGA6L4A6NEF3 574 aa29.96■■■□□ 2.39
C9orf40-201ENST00000376854 NOLC1Q14978 699 aaKnown RBP eCLIP29.96■■■□□ 2.39
C9orf40-201ENST00000376854 CAMK4Q16566 473 aa29.96■■■□□ 2.39
C9orf40-201ENST00000376854 JAK2O60674 1132 aa29.95■■■□□ 2.39
C9orf40-201ENST00000376854 CASP7P55210 303 aa29.95■■■□□ 2.39
C9orf40-201ENST00000376854 Q6ZUG5 572 aa29.95■■■□□ 2.39
C9orf40-201ENST00000376854 DDX46Q7L014 1031 aaKnown RBP29.95■■■□□ 2.39
C9orf40-201ENST00000376854 PLBD2Q8NHP8 589 aa29.95■■■□□ 2.39
C9orf40-201ENST00000376854 LEO1Q8WVC0 666 aaPredicted RBP29.95■■■□□ 2.38
C9orf40-201ENST00000376854 FAM13BQ9NYF5 915 aa29.95■■■□□ 2.38
C9orf40-201ENST00000376854 CPDO75976 1380 aa29.95■■■□□ 2.38
C9orf40-201ENST00000376854 DYNC1I1O14576 645 aa29.94■■■□□ 2.38
C9orf40-201ENST00000376854 CYP21A2P08686 494 aa29.94■■■□□ 2.38
C9orf40-201ENST00000376854 LMBR1LQ6UX01 489 aa29.94■■■□□ 2.38
C9orf40-201ENST00000376854 HSP90B1P14625 803 aaKnown RBP29.94■■■□□ 2.38
C9orf40-201ENST00000376854 FAM200AQ8TCP9 573 aa29.94■■■□□ 2.38
C9orf40-201ENST00000376854 DACT1Q9NYF0 836 aa29.94■■■□□ 2.38
C9orf40-201ENST00000376854 GLI3P10071 1580 aa29.93■■■□□ 2.38
C9orf40-201ENST00000376854 TYRO3Q06418 890 aa29.93■■■□□ 2.38
C9orf40-201ENST00000376854 BRINP3Q76B58 766 aa29.93■■■□□ 2.38
C9orf40-201ENST00000376854 TNMDQ9H2S6 317 aa29.93■■■□□ 2.38
Retrieved 100 of 20,778 RNA–protein pairs in 18.4 ms