RNA–Protein interactions for RNA: ENST00000366942.3

USH2A-202, Transcript of usherin, humanhuman

TSL 1 (best) BASIC

Gene USH2A, Length 6,320 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH2A-202ENST00000366942 BACH1O14867 736 aa4.75□□□□□ -1.65
USH2A-202ENST00000366942 NCAM2O15394 837 aa4.75□□□□□ -1.65
USH2A-202ENST00000366942 MAP3K13O43283 966 aa4.75□□□□□ -1.65
USH2A-202ENST00000366942 HUNKP57058 714 aa4.75□□□□□ -1.65
USH2A-202ENST00000366942 GNPTABQ3T906 1256 aa4.75□□□□□ -1.65
USH2A-202ENST00000366942 GABPB2Q8TAK5 448 aaPredicted RBP4.75□□□□□ -1.65
USH2A-202ENST00000366942 PRIMPOLQ96LW4 560 aa4.75□□□□□ -1.65
USH2A-202ENST00000366942 GLT8D2Q9H1C3 349 aa4.75□□□□□ -1.65
USH2A-202ENST00000366942 C6orf50Q9HD87 102 aa4.75□□□□□ -1.65
USH2A-202ENST00000366942 MYL6BP14649 208 aa4.75□□□□□ -1.65
USH2A-202ENST00000366942 TMOD1P28289 359 aa4.75□□□□□ -1.65
USH2A-202ENST00000366942 DZIP3Q86Y13 1208 aaKnown RBP4.75□□□□□ -1.65
USH2A-202ENST00000366942 RABGGTAQ92696 567 aa4.75□□□□□ -1.65
USH2A-202ENST00000366942 SIRT1Q96EB6 747 aa4.75□□□□□ -1.65
USH2A-202ENST00000366942 FSD1Q9BTV5 496 aa4.75□□□□□ -1.65
USH2A-202ENST00000366942 ADD3Q9UEY8 706 aaKnown RBP4.75□□□□□ -1.65
USH2A-202ENST00000366942 HFM1A2PYH4 1435 aa4.75□□□□□ -1.65
USH2A-202ENST00000366942 WDR17Q8IZU2 1322 aa4.75□□□□□ -1.65
USH2A-202ENST00000366942 MYCP01106 439 aaPredicted RBP4.75□□□□□ -1.65
USH2A-202ENST00000366942 PTPAQ15257 358 aa4.75□□□□□ -1.65
USH2A-202ENST00000366942 GIGYF2Q6Y7W6 1299 aaKnown RBP4.75□□□□□ -1.65
USH2A-202ENST00000366942 JPH2Q9BR39 696 aaPredicted RBP4.75□□□□□ -1.65
USH2A-202ENST00000366942 LRRC27Q9C0I9 530 aa4.75□□□□□ -1.65
USH2A-202ENST00000366942 HYPKQ9NX55 129 aa4.75□□□□□ -1.65
USH2A-202ENST00000366942 MYO3BQ8WXR4 1341 aa4.75□□□□□ -1.65
USH2A-202ENST00000366942 TOP2BQ02880 1626 aa4.75□□□□□ -1.65
USH2A-202ENST00000366942 GNAT3A8MTJ3 354 aa4.75□□□□□ -1.65
USH2A-202ENST00000366942 IGFBP4P22692 258 aa4.75□□□□□ -1.65
USH2A-202ENST00000366942 CALML3P27482 149 aa4.75□□□□□ -1.65
USH2A-202ENST00000366942 TRMT44Q8IYL2 757 aaKnown RBP4.75□□□□□ -1.65
USH2A-202ENST00000366942 NAP1L4Q99733 375 aaKnown RBP4.75□□□□□ -1.65
USH2A-202ENST00000366942 DEF6Q9H4E7 631 aa4.75□□□□□ -1.65
USH2A-202ENST00000366942 MAGEC2Q9UBF1 373 aaPredicted RBP4.75□□□□□ -1.65
USH2A-202ENST00000366942 FGD6Q6ZV73 1430 aa4.75□□□□□ -1.65
USH2A-202ENST00000366942 ST18O60284 1047 aa4.75□□□□□ -1.65
USH2A-202ENST00000366942 SSBP05455 408 aaKnown RBP eCLIP4.75□□□□□ -1.65
USH2A-202ENST00000366942 NAP1L1P55209 391 aaKnown RBP4.75□□□□□ -1.65
USH2A-202ENST00000366942 PTPROQ16827 1216 aa4.75□□□□□ -1.65
USH2A-202ENST00000366942 DEFB115Q30KQ5 88 aa4.75□□□□□ -1.65
USH2A-202ENST00000366942 GANCQ8TET4 914 aa4.75□□□□□ -1.65
USH2A-202ENST00000366942 TANGO6Q9C0B7 1094 aa4.75□□□□□ -1.65
USH2A-202ENST00000366942 EFCC1Q9HA90 598 aa4.75□□□□□ -1.65
USH2A-202ENST00000366942 SRPRBQ9Y5M8 271 aaKnown RBP4.75□□□□□ -1.65
USH2A-202ENST00000366942 RGL2O15211 777 aa4.74□□□□□ -1.65
USH2A-202ENST00000366942 STX6O43752 255 aa4.74□□□□□ -1.65
USH2A-202ENST00000366942 IDH1O75874 414 aaKnown RBP4.74□□□□□ -1.65
USH2A-202ENST00000366942 UFL1O94874 794 aa4.74□□□□□ -1.65
USH2A-202ENST00000366942 MSNP26038 577 aaKnown RBP4.74□□□□□ -1.65
USH2A-202ENST00000366942 NLRP5P59047 1200 aa4.74□□□□□ -1.65
USH2A-202ENST00000366942 MLLT1Q03111 559 aaPredicted RBP4.74□□□□□ -1.65
USH2A-202ENST00000366942 MCTP1Q6DN14 999 aa4.74□□□□□ -1.65
USH2A-202ENST00000366942 SDE2Q6IQ49 451 aa4.74□□□□□ -1.65
USH2A-202ENST00000366942 VPS50Q96JG6 964 aa4.74□□□□□ -1.65
USH2A-202ENST00000366942 SNRKQ9NRH2 765 aa4.74□□□□□ -1.65
USH2A-202ENST00000366942 TTC21BQ7Z4L5 1316 aa4.74□□□□□ -1.65
USH2A-202ENST00000366942 KIAA0586Q9BVV6 1533 aa4.74□□□□□ -1.65
USH2A-202ENST00000366942 ZSCAN20P17040 1043 aaPredicted RBP4.74□□□□□ -1.65
USH2A-202ENST00000366942 TSPY1Q01534 308 aa4.74□□□□□ -1.65
USH2A-202ENST00000366942 NOGQ13253 232 aa4.74□□□□□ -1.65
USH2A-202ENST00000366942 MCTP2Q6DN12 878 aa4.74□□□□□ -1.65
USH2A-202ENST00000366942 NECTIN2Q92692 538 aa4.74□□□□□ -1.65
USH2A-202ENST00000366942 SRGAP3O43295 1099 aa4.74□□□□□ -1.65
USH2A-202ENST00000366942 FCGRTP55899 365 aa4.74□□□□□ -1.65
USH2A-202ENST00000366942 RIPK4P57078 832 aa4.74□□□□□ -1.65
USH2A-202ENST00000366942 LMBR1LQ6UX01 489 aa4.74□□□□□ -1.65
USH2A-202ENST00000366942 SMARCC2Q8TAQ2 1214 aa4.74□□□□□ -1.65
USH2A-202ENST00000366942 RNF34Q969K3 372 aa4.74□□□□□ -1.65
USH2A-202ENST00000366942 PAGR1Q9BTK6 254 aa4.74□□□□□ -1.65
USH2A-202ENST00000366942 EIF2AK3Q9NZJ5 1116 aaKnown RBP4.74□□□□□ -1.65
USH2A-202ENST00000366942 TMPOP42166 694 aaKnown RBP4.74□□□□□ -1.65
USH2A-202ENST00000366942 MSL1Q68DK7 614 aa4.74□□□□□ -1.65
USH2A-202ENST00000366942 NSMCE1Q8WV22 266 aa4.74□□□□□ -1.65
USH2A-202ENST00000366942 RILPL2Q969X0 211 aa4.74□□□□□ -1.65
USH2A-202ENST00000366942 BICD1Q96G01 975 aa4.74□□□□□ -1.65
USH2A-202ENST00000366942 PARK7Q99497 189 aaKnown RBP4.74□□□□□ -1.65
USH2A-202ENST00000366942 RIMBP2O15034 1052 aa4.74□□□□□ -1.65
USH2A-202ENST00000366942 ATP2B1P20020 1258 aa4.74□□□□□ -1.65
USH2A-202ENST00000366942 GADD45BO75293 160 aaPredicted RBP4.73□□□□□ -1.65
USH2A-202ENST00000366942 CAPN2P17655 700 aa4.73□□□□□ -1.65
USH2A-202ENST00000366942 DGKZQ13574 1117 aa4.73□□□□□ -1.65
USH2A-202ENST00000366942 CC2D1AQ6P1N0 951 aaPredicted RBP4.73□□□□□ -1.65
USH2A-202ENST00000366942 GJD4Q96KN9 370 aaPredicted RBP4.73□□□□□ -1.65
USH2A-202ENST00000366942 CWC25Q9NXE8 425 aaPredicted RBP4.73□□□□□ -1.65
USH2A-202ENST00000366942 RNASELQ05823 741 aaKnown RBP4.73□□□□□ -1.65
USH2A-202ENST00000366942 WDR66Q8TBY9 1149 aa4.73□□□□□ -1.65
USH2A-202ENST00000366942 EDARQ9UNE0 448 aa4.73□□□□□ -1.65
USH2A-202ENST00000366942 JAG2Q9Y219 1238 aa4.73□□□□□ -1.65
USH2A-202ENST00000366942 ZMYM3Q14202 1370 aa4.73□□□□□ -1.65
USH2A-202ENST00000366942 TRAPPC8Q9Y2L5 1435 aa4.73□□□□□ -1.65
USH2A-202ENST00000366942 EIF4G3O43432 1585 aaKnown RBP4.73□□□□□ -1.65
USH2A-202ENST00000366942 SFI1A8K8P3 1242 aa4.73□□□□□ -1.65
USH2A-202ENST00000366942 F8W031 263 aaPredicted RBP4.73□□□□□ -1.65
USH2A-202ENST00000366942 INHBEP58166 350 aa4.73□□□□□ -1.65
USH2A-202ENST00000366942 SLC9C1Q4G0N8 1177 aa4.73□□□□□ -1.65
USH2A-202ENST00000366942 NLRX1Q86UT6 975 aa4.73□□□□□ -1.65
USH2A-202ENST00000366942 AACSQ86V21 672 aa4.73□□□□□ -1.65
USH2A-202ENST00000366942 DCAF5Q96JK2 942 aa4.73□□□□□ -1.65
USH2A-202ENST00000366942 FGD5Q6ZNL6 1462 aa4.73□□□□□ -1.65
USH2A-202ENST00000366942 PRR29P0C7W0 189 aa4.73□□□□□ -1.65
USH2A-202ENST00000366942 ATP2B4P23634 1241 aa4.73□□□□□ -1.65
Retrieved 100 of 20,778 RNA–protein pairs in 66.6 ms