RNA–Protein interactions for RNA: ENST00000357857.14

CLN3-204, Transcript of CLN3, battenin, humanhuman

TSL 2 BASIC

Gene CLN3, Length 1,720 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-204ENST00000357857 SETDB2Q96T68 719 aa22.99■■□□□ 1.27
CLN3-204ENST00000357857 RBM19Q9Y4C8 960 aaKnown RBP22.99■■□□□ 1.27
CLN3-204ENST00000357857 IFIT5Q13325 482 aaKnown RBP22.98■■□□□ 1.27
CLN3-204ENST00000357857 NUTM1Q86Y26 1132 aa22.98■■□□□ 1.27
CLN3-204ENST00000357857 CCDC85AQ96PX6 553 aaPredicted RBP22.98■■□□□ 1.27
CLN3-204ENST00000357857 STAP2Q9UGK3 403 aa22.98■■□□□ 1.27
CLN3-204ENST00000357857 TUBGCP6Q96RT7 1819 aa22.98■■□□□ 1.27
CLN3-204ENST00000357857 CASZ1Q86V15 1759 aa22.98■■□□□ 1.27
CLN3-204ENST00000357857 HCLS1P14317 486 aaPredicted RBP22.97■■□□□ 1.27
CLN3-204ENST00000357857 GSPT1P15170 499 aaKnown RBP22.96■■□□□ 1.27
CLN3-204ENST00000357857 ZNF594Q96JF6 807 aaPredicted RBP22.96■■□□□ 1.27
CLN3-204ENST00000357857 NYXQ9GZU5 481 aa22.96■■□□□ 1.27
CLN3-204ENST00000357857 AOX1Q06278 1338 aa22.96■■□□□ 1.27
CLN3-204ENST00000357857 GREM2Q9H772 168 aa22.96■■□□□ 1.27
CLN3-204ENST00000357857 EYA2O00167 538 aa22.95■■□□□ 1.26
CLN3-204ENST00000357857 CIAO1O76071 339 aa22.95■■□□□ 1.26
CLN3-204ENST00000357857 TAF7LQ5H9L4 462 aa22.95■■□□□ 1.26
CLN3-204ENST00000357857 AKT1S1Q96B36 256 aa22.95■■□□□ 1.26
CLN3-204ENST00000357857 ANKRD18BA2A2Z9 1011 aa22.94■■□□□ 1.26
CLN3-204ENST00000357857 IFIT2P09913 472 aaKnown RBP22.94■■□□□ 1.26
CLN3-204ENST00000357857 ITGA6P23229 1130 aa22.94■■□□□ 1.26
CLN3-204ENST00000357857 IL15P40933 162 aaPredicted RBP22.94■■□□□ 1.26
CLN3-204ENST00000357857 ZNF827Q17R98 1081 aa22.94■■□□□ 1.26
CLN3-204ENST00000357857 ATG9AQ7Z3C6 839 aa22.94■■□□□ 1.26
CLN3-204ENST00000357857 AACSQ86V21 672 aa22.94■■□□□ 1.26
CLN3-204ENST00000357857 FBXO3Q9UK99 471 aa22.94■■□□□ 1.26
CLN3-204ENST00000357857 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP22.94■■□□□ 1.26
CLN3-204ENST00000357857 TFCP2Q12800 502 aa22.94■■□□□ 1.26
CLN3-204ENST00000357857 ERFEQ4G0M1 354 aa22.94■■□□□ 1.26
CLN3-204ENST00000357857 TSHZ3Q63HK5 1081 aa22.94■■□□□ 1.26
CLN3-204ENST00000357857 TFCP2L1Q9NZI6 479 aa22.94■■□□□ 1.26
CLN3-204ENST00000357857 NBPF5PQ86XG9 351 aaPredicted RBP22.93■■□□□ 1.26
CLN3-204ENST00000357857 GTF2E1P29083 439 aaPredicted RBP22.92■■□□□ 1.26
CLN3-204ENST00000357857 LRRC24Q50LG9 513 aa22.92■■□□□ 1.26
CLN3-204ENST00000357857 EAF2Q96CJ1 260 aaPredicted RBP22.92■■□□□ 1.26
CLN3-204ENST00000357857 GYS1P13807 737 aa22.91■■□□□ 1.26
CLN3-204ENST00000357857 CCDC152Q4G0S7 254 aa22.91■■□□□ 1.26
CLN3-204ENST00000357857 PUS3Q9BZE2 481 aaKnown RBP22.91■■□□□ 1.26
CLN3-204ENST00000357857 CARMIL3Q8ND23 1372 aa22.91■■□□□ 1.26
CLN3-204ENST00000357857 TTC41PQ6P2S7 1318 aa22.91■■□□□ 1.26
CLN3-204ENST00000357857 AK9Q5TCS8 1911 aa22.91■■□□□ 1.26
CLN3-204ENST00000357857 NFIXQ14938 502 aa22.91■■□□□ 1.26
CLN3-204ENST00000357857 SLC10A5Q5PT55 438 aa22.91■■□□□ 1.26
CLN3-204ENST00000357857 TPTE2Q6XPS3 522 aa22.91■■□□□ 1.26
CLN3-204ENST00000357857 GPATCH3Q96I76 525 aa22.91■■□□□ 1.26
CLN3-204ENST00000357857 RTL9Q8NET4 1388 aa22.91■■□□□ 1.26
CLN3-204ENST00000357857 ABCC12Q96J65 1359 aa22.9■■□□□ 1.26
CLN3-204ENST00000357857 TNNI3KQ59H18 835 aa22.9■■□□□ 1.26
CLN3-204ENST00000357857 CAMKK2Q96RR4 588 aa22.9■■□□□ 1.26
CLN3-204ENST00000357857 CCDC8Q9H0W5 538 aaPredicted RBP22.9■■□□□ 1.26
CLN3-204ENST00000357857 FPGT-TNNI3KV9GXZ4 949 aa22.9■■□□□ 1.26
CLN3-204ENST00000357857 SPEF2Q9C093 1822 aa22.9■■□□□ 1.26
CLN3-204ENST00000357857 LRP5O75197 1615 aa22.9■■□□□ 1.26
CLN3-204ENST00000357857 SDSP20132 328 aa22.89■■□□□ 1.26
CLN3-204ENST00000357857 EN1Q05925 392 aaPredicted RBP22.89■■□□□ 1.26
CLN3-204ENST00000357857 EZH2Q15910 746 aaKnown RBP22.89■■□□□ 1.26
CLN3-204ENST00000357857 SF3B2Q13435 895 aaKnown RBP22.88■■□□□ 1.25
CLN3-204ENST00000357857 FLAD1Q8NFF5 587 aa22.88■■□□□ 1.25
CLN3-204ENST00000357857 PI4K2BQ8TCG2 481 aa22.88■■□□□ 1.25
CLN3-204ENST00000357857 GPR108Q9NPR9 543 aa22.88■■□□□ 1.25
CLN3-204ENST00000357857 ECHDC1Q9NTX5 307 aa22.88■■□□□ 1.25
CLN3-204ENST00000357857 CDC45O75419 566 aa22.88■■□□□ 1.25
CLN3-204ENST00000357857 LDHAL6AQ6ZMR3 332 aa22.88■■□□□ 1.25
CLN3-204ENST00000357857 ERC2O15083 957 aa22.87■■□□□ 1.25
CLN3-204ENST00000357857 SF3B3Q15393 1217 aaKnown RBP22.87■■□□□ 1.25
CLN3-204ENST00000357857 CEP126Q9P2H0 1117 aa22.87■■□□□ 1.25
CLN3-204ENST00000357857 GLRX3O76003 335 aaKnown RBP22.86■■□□□ 1.25
CLN3-204ENST00000357857 COL23A1Q86Y22 540 aaPredicted RBP22.86■■□□□ 1.25
CLN3-204ENST00000357857 CNNM1Q9NRU3 951 aa22.86■■□□□ 1.25
CLN3-204ENST00000357857 TLR7Q9NYK1 1049 aaKnown RBP22.86■■□□□ 1.25
CLN3-204ENST00000357857 RIPOR2Q9Y4F9 1068 aa22.86■■□□□ 1.25
CLN3-204ENST00000357857 ZNF609O15014 1411 aa22.86■■□□□ 1.25
CLN3-204ENST00000357857 NPHP1O15259 732 aa22.85■■□□□ 1.25
CLN3-204ENST00000357857 SEC24BO95487 1268 aa22.85■■□□□ 1.25
CLN3-204ENST00000357857 BAG6P46379 1132 aa22.85■■□□□ 1.25
CLN3-204ENST00000357857 SEC31BQ9NQW1 1179 aa22.85■■□□□ 1.25
CLN3-204ENST00000357857 RIC1Q4ADV7 1423 aa22.85■■□□□ 1.25
CLN3-204ENST00000357857 QSER1Q2KHR3 1735 aa22.85■■□□□ 1.25
CLN3-204ENST00000357857 TM4SF1P30408 202 aa22.85■■□□□ 1.25
CLN3-204ENST00000357857 TBC1D9Q6ZT07 1266 aa22.85■■□□□ 1.25
CLN3-204ENST00000357857 C3orf67Q6ZVT6 689 aa22.85■■□□□ 1.25
CLN3-204ENST00000357857 TRIM6-TRIM34B2RNG4 842 aa22.84■■□□□ 1.25
CLN3-204ENST00000357857 MSH5O43196 834 aa22.84■■□□□ 1.25
CLN3-204ENST00000357857 CNBD1Q8NA66 436 aa22.84■■□□□ 1.25
CLN3-204ENST00000357857 NLRP3Q96P20 1036 aa22.84■■□□□ 1.25
CLN3-204ENST00000357857 DBNLQ9UJU6 430 aaKnown RBP22.84■■□□□ 1.25
CLN3-204ENST00000357857 TNRC6CQ9HCJ0 1690 aaKnown RBP22.84■■□□□ 1.25
CLN3-204ENST00000357857 METTL24Q5JXM2 366 aa22.83■■□□□ 1.25
CLN3-204ENST00000357857 AKAP2Q9Y2D5 859 aa22.83■■□□□ 1.25
CLN3-204ENST00000357857 PNPLA7Q6ZV29 1317 aa22.83■■□□□ 1.25
CLN3-204ENST00000357857 TAF1P21675 1872 aa22.83■■□□□ 1.25
CLN3-204ENST00000357857 IGHMBP2P38935 993 aaKnown RBP22.82■■□□□ 1.24
CLN3-204ENST00000357857 CDC5LQ99459 802 aaKnown RBP22.82■■□□□ 1.24
CLN3-204ENST00000357857 MPHOSPH8Q99549 860 aa22.82■■□□□ 1.24
CLN3-204ENST00000357857 CCDC24Q8N4L8 307 aa22.82■■□□□ 1.24
CLN3-204ENST00000357857 RILPL2Q969X0 211 aa22.82■■□□□ 1.24
CLN3-204ENST00000357857 DBNDD2Q9BQY9 259 aa22.82■■□□□ 1.24
CLN3-204ENST00000357857 SERPINB2P05120 415 aa22.81■■□□□ 1.24
CLN3-204ENST00000357857 CASC1Q6TDU7 716 aa22.81■■□□□ 1.24
CLN3-204ENST00000357857 NEUROD6Q96NK8 337 aa22.81■■□□□ 1.24
Retrieved 100 of 20,778 RNA–protein pairs in 62.5 ms