RNA–Protein interactions for RNA: ENST00000356147.3

PTPRA-203, Transcript of protein tyrosine phosphatase, receptor type A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPRA, Length 3,135 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRA-203ENST00000356147 FAM208AQ9UK61 1670 aaKnown RBP11.96□□□□□ -0.49
PTPRA-203ENST00000356147 NPHP3Q7Z494 1330 aa11.96□□□□□ -0.49
PTPRA-203ENST00000356147 G3BP1Q13283 466 aaKnown RBP eCLIP11.96□□□□□ -0.49
PTPRA-203ENST00000356147 NBPF6Q5VWK0 638 aa11.96□□□□□ -0.49
PTPRA-203ENST00000356147 NBPF4Q96M43 638 aa11.96□□□□□ -0.49
PTPRA-203ENST00000356147 PDCP20941 246 aa11.96□□□□□ -0.5
PTPRA-203ENST00000356147 SIPA1L2Q9P2F8 1722 aaPredicted RBP11.96□□□□□ -0.5
PTPRA-203ENST00000356147 HTATSF1O43719 755 aaKnown RBP11.95□□□□□ -0.5
PTPRA-203ENST00000356147 CCT2P78371 535 aaKnown RBP11.95□□□□□ -0.5
PTPRA-203ENST00000356147 TDRD7Q8NHU6 1098 aaKnown RBP11.95□□□□□ -0.5
PTPRA-203ENST00000356147 DDX19AQ9NUU7 478 aaKnown RBP11.95□□□□□ -0.5
PTPRA-203ENST00000356147 SKILP12757 684 aa11.95□□□□□ -0.5
PTPRA-203ENST00000356147 PSMA5P28066 241 aa11.95□□□□□ -0.5
PTPRA-203ENST00000356147 Q6ZUG5 572 aa11.95□□□□□ -0.5
PTPRA-203ENST00000356147 CHST3Q7LGC8 479 aa11.95□□□□□ -0.5
PTPRA-203ENST00000356147 KAZALD1Q96I82 304 aa11.95□□□□□ -0.5
PTPRA-203ENST00000356147 FMNL2Q96PY5 1086 aa11.95□□□□□ -0.5
PTPRA-203ENST00000356147 DNAJC2Q99543 621 aaKnown RBP11.95□□□□□ -0.5
PTPRA-203ENST00000356147 BECN2A8MW95 431 aa11.95□□□□□ -0.5
PTPRA-203ENST00000356147 HDGFP51858 240 aaKnown RBP11.95□□□□□ -0.5
PTPRA-203ENST00000356147 ELF2Q15723 593 aa11.95□□□□□ -0.5
PTPRA-203ENST00000356147 LRRC8AQ8IWT6 810 aa11.95□□□□□ -0.5
PTPRA-203ENST00000356147 A0A0G2JLW4 131 aa11.94□□□□□ -0.5
PTPRA-203ENST00000356147 ERICH4A6NGS2 130 aa11.94□□□□□ -0.5
PTPRA-203ENST00000356147 ZNF530Q6P9A1 599 aaPredicted RBP11.94□□□□□ -0.5
PTPRA-203ENST00000356147 GOLPH3LQ9H4A5 285 aa11.94□□□□□ -0.5
PTPRA-203ENST00000356147 NCOA5Q9HCD5 579 aaKnown RBP11.94□□□□□ -0.5
PTPRA-203ENST00000356147 OGFRQ9NZT2 677 aa11.94□□□□□ -0.5
PTPRA-203ENST00000356147 ELP1O95163 1332 aa11.94□□□□□ -0.5
PTPRA-203ENST00000356147 CCDC69A6NI79 296 aa11.94□□□□□ -0.5
PTPRA-203ENST00000356147 MYL6BP14649 208 aa11.94□□□□□ -0.5
PTPRA-203ENST00000356147 KMT5BQ4FZB7 885 aa11.94□□□□□ -0.5
PTPRA-203ENST00000356147 CCAR1Q8IX12 1150 aaKnown RBP11.94□□□□□ -0.5
PTPRA-203ENST00000356147 USP42Q9H9J4 1324 aaKnown RBP11.94□□□□□ -0.5
PTPRA-203ENST00000356147 PTPN21Q16825 1174 aa11.93□□□□□ -0.5
PTPRA-203ENST00000356147 RNF20Q5VTR2 975 aa11.93□□□□□ -0.5
PTPRA-203ENST00000356147 KCNB2Q92953 911 aa11.93□□□□□ -0.5
PTPRA-203ENST00000356147 TSPOAP1O95153 1857 aa11.93□□□□□ -0.5
PTPRA-203ENST00000356147 RESTQ13127 1097 aa11.93□□□□□ -0.5
PTPRA-203ENST00000356147 IQCB1Q15051 598 aa11.93□□□□□ -0.5
PTPRA-203ENST00000356147 PTPN14Q15678 1187 aa11.93□□□□□ -0.5
PTPRA-203ENST00000356147 ISM2Q6H9L7 571 aa11.93□□□□□ -0.5
PTPRA-203ENST00000356147 LRRN4CLQ8ND94 238 aa11.93□□□□□ -0.5
PTPRA-203ENST00000356147 SIRT1Q96EB6 747 aa11.93□□□□□ -0.5
PTPRA-203ENST00000356147 SPATA31D1Q6ZQQ2 1576 aa11.93□□□□□ -0.5
PTPRA-203ENST00000356147 NPHP4O75161 1426 aaPredicted RBP11.93□□□□□ -0.5
PTPRA-203ENST00000356147 KIF20AO95235 890 aa11.93□□□□□ -0.5
PTPRA-203ENST00000356147 MAPK8IP2Q13387 824 aaPredicted RBP11.93□□□□□ -0.5
PTPRA-203ENST00000356147 EPHA10Q5JZY3 1008 aa11.93□□□□□ -0.5
PTPRA-203ENST00000356147 DDX46Q7L014 1031 aaKnown RBP11.93□□□□□ -0.5
PTPRA-203ENST00000356147 AOPEPQ8N6M6 819 aa11.93□□□□□ -0.5
PTPRA-203ENST00000356147 ZBTB9Q96C00 473 aa11.93□□□□□ -0.5
PTPRA-203ENST00000356147 COL15A1P39059 1388 aa11.92□□□□□ -0.5
PTPRA-203ENST00000356147 TECPR2O15040 1411 aa11.92□□□□□ -0.5
PTPRA-203ENST00000356147 ADAMTS13Q76LX8 1427 aa11.92□□□□□ -0.5
PTPRA-203ENST00000356147 BIN1O00499 593 aa11.92□□□□□ -0.5
PTPRA-203ENST00000356147 SCRN1Q12765 414 aa11.92□□□□□ -0.5
PTPRA-203ENST00000356147 OTUD7BQ6GQQ9 843 aa11.92□□□□□ -0.5
PTPRA-203ENST00000356147 RAB11FIP4Q86YS3 637 aa11.92□□□□□ -0.5
PTPRA-203ENST00000356147 KIF18AQ8NI77 898 aa11.92□□□□□ -0.5
PTPRA-203ENST00000356147 NEK1Q96PY6 1258 aa11.92□□□□□ -0.5
PTPRA-203ENST00000356147 USP28Q96RU2 1077 aa11.92□□□□□ -0.5
PTPRA-203ENST00000356147 DDX41Q9UJV9 622 aaKnown RBP11.92□□□□□ -0.5
PTPRA-203ENST00000356147 PTPRUQ92729 1446 aa11.92□□□□□ -0.5
PTPRA-203ENST00000356147 GRM8O00222 908 aa11.92□□□□□ -0.5
PTPRA-203ENST00000356147 TAF5LO75529 589 aa11.92□□□□□ -0.5
PTPRA-203ENST00000356147 GORABQ5T7V8 394 aa11.92□□□□□ -0.5
PTPRA-203ENST00000356147 FBXO38Q6PIJ6 1188 aa11.92□□□□□ -0.5
PTPRA-203ENST00000356147 GTF3C6Q969F1 213 aa11.92□□□□□ -0.5
PTPRA-203ENST00000356147 FEZ1Q99689 392 aa11.92□□□□□ -0.5
PTPRA-203ENST00000356147 DBF4Q9UBU7 674 aaPredicted RBP11.92□□□□□ -0.5
PTPRA-203ENST00000356147 TMEM2Q9UHN6 1383 aa11.92□□□□□ -0.5
PTPRA-203ENST00000356147 APOBRQ0VD83 1088 aa11.91□□□□□ -0.5
PTPRA-203ENST00000356147 ME1P48163 572 aa11.91□□□□□ -0.5
PTPRA-203ENST00000356147 SLC39A6Q13433 755 aa11.91□□□□□ -0.5
PTPRA-203ENST00000356147 ANKRD1Q15327 319 aa11.91□□□□□ -0.5
PTPRA-203ENST00000356147 PAXBP1Q9Y5B6 917 aa11.91□□□□□ -0.5
PTPRA-203ENST00000356147 CYP21A2P08686 494 aa11.91□□□□□ -0.5
PTPRA-203ENST00000356147 LMOD2Q6P5Q4 547 aa11.91□□□□□ -0.5
PTPRA-203ENST00000356147 KSR2Q6VAB6 950 aa11.91□□□□□ -0.5
PTPRA-203ENST00000356147 RBM43Q6ZSC3 357 aaKnown RBP11.91□□□□□ -0.5
PTPRA-203ENST00000356147 ERC1Q8IUD2 1116 aa11.91□□□□□ -0.5
PTPRA-203ENST00000356147 TRERF1Q96PN7 1200 aa11.91□□□□□ -0.5
PTPRA-203ENST00000356147 PXDNLA1KZ92 1463 aa11.9□□□□□ -0.5
PTPRA-203ENST00000356147 GJB4Q9NTQ9 266 aa11.9□□□□□ -0.5
PTPRA-203ENST00000356147 A0A1B0GVL5 298 aa11.9□□□□□ -0.5
PTPRA-203ENST00000356147 SLFN14P0C7P3 912 aa11.9□□□□□ -0.5
PTPRA-203ENST00000356147 CCZ1BP86790 482 aa11.9□□□□□ -0.5
PTPRA-203ENST00000356147 CCZ1P86791 482 aaPredicted RBP11.9□□□□□ -0.5
PTPRA-203ENST00000356147 MTX1Q13505 466 aa11.9□□□□□ -0.5
PTPRA-203ENST00000356147 STOX1Q6ZVD7 989 aa11.9□□□□□ -0.5
PTPRA-203ENST00000356147 RIC3Q7Z5B4 369 aa11.9□□□□□ -0.5
PTPRA-203ENST00000356147 FSIP1Q8NA03 581 aa11.9□□□□□ -0.5
PTPRA-203ENST00000356147 TNRQ92752 1358 aa11.89□□□□□ -0.51
PTPRA-203ENST00000356147 KINO60870 393 aaKnown RBP11.89□□□□□ -0.51
PTPRA-203ENST00000356147 ERCC6LQ2NKX8 1250 aa11.89□□□□□ -0.51
PTPRA-203ENST00000356147 DHX40Q8IX18 779 aaKnown RBP11.89□□□□□ -0.51
PTPRA-203ENST00000356147 DBNLQ9UJU6 430 aaKnown RBP11.89□□□□□ -0.51
PTPRA-203ENST00000356147 SMC2O95347 1197 aa11.89□□□□□ -0.51
PTPRA-203ENST00000356147 CCDC73Q6ZRK6 1079 aa11.89□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 33.2 ms