RNA–Protein interactions for RNA: ENST00000343916.7

COL9A3-201, Transcript of collagen type IX alpha 3 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL9A3, Length 2,485 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-201ENST00000343916 ERBB4Q15303 1308 aa23.2■■□□□ 1.31
COL9A3-201ENST00000343916 MBD3O95983 291 aa23.2■■□□□ 1.3
COL9A3-201ENST00000343916 ST3GAL1Q11201 340 aa23.2■■□□□ 1.3
COL9A3-201ENST00000343916 ME3Q16798 604 aa23.2■■□□□ 1.3
COL9A3-201ENST00000343916 USP48Q86UV5 1035 aa23.2■■□□□ 1.3
COL9A3-201ENST00000343916 H7C1W4 665 aa23.2■■□□□ 1.3
COL9A3-201ENST00000343916 TPRNQ4KMQ1 711 aa23.2■■□□□ 1.3
COL9A3-201ENST00000343916 NECAB1Q8N987 351 aa23.2■■□□□ 1.3
COL9A3-201ENST00000343916 COL15A1P39059 1388 aa23.2■■□□□ 1.3
COL9A3-201ENST00000343916 ZSCAN22P10073 491 aaPredicted RBP23.19■■□□□ 1.3
COL9A3-201ENST00000343916 GJB2P29033 226 aa23.19■■□□□ 1.3
COL9A3-201ENST00000343916 CWC25Q9NXE8 425 aaPredicted RBP23.19■■□□□ 1.3
COL9A3-201ENST00000343916 TPCN1Q9ULQ1 816 aa23.19■■□□□ 1.3
COL9A3-201ENST00000343916 CNPY2Q9Y2B0 182 aa23.18■■□□□ 1.3
COL9A3-201ENST00000343916 CARD10Q9BWT7 1032 aa23.18■■□□□ 1.3
COL9A3-201ENST00000343916 ZNF330Q9Y3S2 320 aaPredicted RBP23.18■■□□□ 1.3
COL9A3-201ENST00000343916 KCPQ6ZWJ8 1503 aa23.18■■□□□ 1.3
COL9A3-201ENST00000343916 EVA1CP58658 441 aa23.17■■□□□ 1.3
COL9A3-201ENST00000343916 NKX1-1Q15270 411 aaPredicted RBP23.17■■□□□ 1.3
COL9A3-201ENST00000343916 LRSAM1Q6UWE0 723 aa23.17■■□□□ 1.3
COL9A3-201ENST00000343916 CCDC129Q6ZRS4 1044 aa23.17■■□□□ 1.3
COL9A3-201ENST00000343916 DDX46Q7L014 1031 aaKnown RBP23.17■■□□□ 1.3
COL9A3-201ENST00000343916 SEC62Q99442 399 aaKnown RBP23.17■■□□□ 1.3
COL9A3-201ENST00000343916 TAF5LO75529 589 aa23.17■■□□□ 1.3
COL9A3-201ENST00000343916 CCDC173Q0VFZ6 552 aa23.17■■□□□ 1.3
COL9A3-201ENST00000343916 ANP32BQ92688 251 aaKnown RBP23.16■■□□□ 1.3
COL9A3-201ENST00000343916 NEUROD6Q96NK8 337 aa23.16■■□□□ 1.3
COL9A3-201ENST00000343916 RNF20Q5VTR2 975 aa23.16■■□□□ 1.3
COL9A3-201ENST00000343916 ATG9AQ7Z3C6 839 aa23.16■■□□□ 1.3
COL9A3-201ENST00000343916 ZNF594Q96JF6 807 aaPredicted RBP23.16■■□□□ 1.3
COL9A3-201ENST00000343916 ZSCAN31Q96LW9 406 aaPredicted RBP23.16■■□□□ 1.3
COL9A3-201ENST00000343916 SH2B1Q9NRF2 756 aaPredicted RBP23.16■■□□□ 1.3
COL9A3-201ENST00000343916 UBR2Q8IWV8 1755 aa23.15■■□□□ 1.3
COL9A3-201ENST00000343916 ESPNB1AK53 854 aa23.15■■□□□ 1.3
COL9A3-201ENST00000343916 F13A1P00488 732 aa23.15■■□□□ 1.3
COL9A3-201ENST00000343916 PSMA5P28066 241 aa23.15■■□□□ 1.3
COL9A3-201ENST00000343916 TIMM10P62072 90 aa23.15■■□□□ 1.3
COL9A3-201ENST00000343916 BLOC1S2Q6QNY1 142 aa23.15■■□□□ 1.3
COL9A3-201ENST00000343916 PPP1R9BQ96SB3 815 aa23.15■■□□□ 1.3
COL9A3-201ENST00000343916 ZNF609O15014 1411 aa23.14■■□□□ 1.29
COL9A3-201ENST00000343916 SLFNL1Q499Z3 407 aa23.14■■□□□ 1.29
COL9A3-201ENST00000343916 LRRC24Q50LG9 513 aa23.14■■□□□ 1.29
COL9A3-201ENST00000343916 HAUS7Q99871 368 aa23.14■■□□□ 1.29
COL9A3-201ENST00000343916 JCADQ9P266 1359 aa23.12■■□□□ 1.29
COL9A3-201ENST00000343916 NUP188Q5SRE5 1749 aa23.12■■□□□ 1.29
COL9A3-201ENST00000343916 FIBPO43427 364 aa23.12■■□□□ 1.29
COL9A3-201ENST00000343916 CCDC191Q8NCU4 936 aa23.12■■□□□ 1.29
COL9A3-201ENST00000343916 RNF214Q8ND24 703 aa23.12■■□□□ 1.29
COL9A3-201ENST00000343916 SHANK3Q9BYB0 1731 aa23.12■■□□□ 1.29
COL9A3-201ENST00000343916 MTMR6Q9Y217 621 aa23.12■■□□□ 1.29
COL9A3-201ENST00000343916 RPS6KB1P23443 525 aa23.11■■□□□ 1.29
COL9A3-201ENST00000343916 VPS37CA5D8V6 355 aaPredicted RBP23.11■■□□□ 1.29
COL9A3-201ENST00000343916 TOB2Q14106 344 aaPredicted RBP23.11■■□□□ 1.29
COL9A3-201ENST00000343916 TJP1Q07157 1748 aa23.1■■□□□ 1.29
COL9A3-201ENST00000343916 TMOD3Q9NYL9 352 aa23.1■■□□□ 1.29
COL9A3-201ENST00000343916 GOLIM4O00461 696 aa23.1■■□□□ 1.29
COL9A3-201ENST00000343916 PUS3Q9BZE2 481 aaKnown RBP23.1■■□□□ 1.29
COL9A3-201ENST00000343916 ASAP1Q9ULH1 1129 aa23.1■■□□□ 1.29
COL9A3-201ENST00000343916 DNM1Q05193 864 aaKnown RBP23.09■■□□□ 1.29
COL9A3-201ENST00000343916 STK3Q13188 491 aa23.09■■□□□ 1.29
COL9A3-201ENST00000343916 USPL1Q5W0Q7 1092 aa23.09■■□□□ 1.29
COL9A3-201ENST00000343916 TMEM87AQ8NBN3 555 aa23.09■■□□□ 1.29
COL9A3-201ENST00000343916 HMG20BQ9P0W2 317 aa23.09■■□□□ 1.29
COL9A3-201ENST00000343916 TNS2Q63HR2 1409 aa23.09■■□□□ 1.29
COL9A3-201ENST00000343916 ABCA3Q99758 1704 aa23.09■■□□□ 1.29
COL9A3-201ENST00000343916 CCDC85AQ96PX6 553 aaPredicted RBP23.09■■□□□ 1.29
COL9A3-201ENST00000343916 PAPPAQ13219 1627 aa23.09■■□□□ 1.29
COL9A3-201ENST00000343916 MCMDC2Q4G0Z9 681 aa23.08■■□□□ 1.29
COL9A3-201ENST00000343916 KBTBD3Q8NAB2 608 aa23.08■■□□□ 1.29
COL9A3-201ENST00000343916 SYAP1Q96A49 352 aaPredicted RBP23.08■■□□□ 1.29
COL9A3-201ENST00000343916 EYA2O00167 538 aa23.07■■□□□ 1.28
COL9A3-201ENST00000343916 IL15P40933 162 aaPredicted RBP23.07■■□□□ 1.28
COL9A3-201ENST00000343916 TSGA10IPQ3SY00 556 aa23.07■■□□□ 1.28
COL9A3-201ENST00000343916 DNAJC10Q8IXB1 793 aa23.07■■□□□ 1.28
COL9A3-201ENST00000343916 PAG1Q9NWQ8 432 aa23.07■■□□□ 1.28
COL9A3-201ENST00000343916 ATP6V1DQ9Y5K8 247 aa23.07■■□□□ 1.28
COL9A3-201ENST00000343916 TOGARAM1Q9Y4F4 1720 aa23.07■■□□□ 1.28
COL9A3-201ENST00000343916 CYP21A2P08686 494 aa23.06■■□□□ 1.28
COL9A3-201ENST00000343916 LARP1BQ659C4 914 aaKnown RBP23.06■■□□□ 1.28
COL9A3-201ENST00000343916 PIGBQ92521 554 aa23.06■■□□□ 1.28
COL9A3-201ENST00000343916 ANKRD1Q15327 319 aa23.06■■□□□ 1.28
COL9A3-201ENST00000343916 FERMT3Q86UX7 667 aa23.06■■□□□ 1.28
COL9A3-201ENST00000343916 A0A1B0GUL7 405 aa23.05■■□□□ 1.28
COL9A3-201ENST00000343916 CDC37L1Q7L3B6 337 aa23.05■■□□□ 1.28
COL9A3-201ENST00000343916 NEK1Q96PY6 1258 aa23.05■■□□□ 1.28
COL9A3-201ENST00000343916 BTG4Q9NY30 223 aa23.05■■□□□ 1.28
COL9A3-201ENST00000343916 FAM89AQ96GI7 184 aa23.05■■□□□ 1.28
COL9A3-201ENST00000343916 ISCA1Q9BUE6 129 aa23.05■■□□□ 1.28
COL9A3-201ENST00000343916 TSPY26PQ9H489 355 aa23.05■■□□□ 1.28
COL9A3-201ENST00000343916 RFX7Q2KHR2 1363 aa23.04■■□□□ 1.28
COL9A3-201ENST00000343916 TCIRG1Q13488 830 aa23.04■■□□□ 1.28
COL9A3-201ENST00000343916 UBE2HP62256 183 aa23.04■■□□□ 1.28
COL9A3-201ENST00000343916 KAT6BQ8WYB5 2073 aa23.03■■□□□ 1.28
COL9A3-201ENST00000343916 FAM173BQ6P4H8 233 aa23.03■■□□□ 1.28
COL9A3-201ENST00000343916 LRRC2Q9BYS8 371 aa23.03■■□□□ 1.28
COL9A3-201ENST00000343916 U3KPZ7 1027 aaPredicted RBP23.03■■□□□ 1.28
COL9A3-201ENST00000343916 NHSL1Q5SYE7 1610 aa23.03■■□□□ 1.28
COL9A3-201ENST00000343916 GPR108Q9NPR9 543 aa23.03■■□□□ 1.28
COL9A3-201ENST00000343916 IFIT1P09914 478 aaKnown RBP23.02■■□□□ 1.28
COL9A3-201ENST00000343916 KRT32Q14532 448 aa23.02■■□□□ 1.28
Retrieved 100 of 20,778 RNA–protein pairs in 42.5 ms