RNA–Protein interactions for RNA: ENST00000340958.3

CLDN4-201, Transcript of claudin 4, humanhuman

APPRIS P1 BASIC

Gene CLDN4, Length 1,831 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN4-201ENST00000340958 CLASRPQ8N2M8 674 aaKnown RBP21.35■■□□□ 1.01
CLDN4-201ENST00000340958 OTUD7AQ8TE49 926 aaPredicted RBP21.35■■□□□ 1.01
CLDN4-201ENST00000340958 SGIP1Q9BQI5 828 aa21.35■■□□□ 1.01
CLDN4-201ENST00000340958 TAF7LQ5H9L4 462 aa21.34■■□□□ 1.01
CLDN4-201ENST00000340958 SYNE4Q8N205 404 aa21.34■■□□□ 1.01
CLDN4-201ENST00000340958 CCDC85AQ96PX6 553 aaPredicted RBP21.34■■□□□ 1.01
CLDN4-201ENST00000340958 SRP68Q9UHB9 627 aaKnown RBP21.34■■□□□ 1.01
CLDN4-201ENST00000340958 RBM19Q9Y4C8 960 aaKnown RBP21.34■■□□□ 1.01
CLDN4-201ENST00000340958 HSP90B1P14625 803 aaKnown RBP21.34■■□□□ 1.01
CLDN4-201ENST00000340958 MSL1Q68DK7 614 aa21.34■■□□□ 1.01
CLDN4-201ENST00000340958 PLA2G12BQ9BX93 195 aa21.34■■□□□ 1.01
CLDN4-201ENST00000340958 COPRSQ9NQ92 184 aa21.34■■□□□ 1.01
CLDN4-201ENST00000340958 GTF2E1P29083 439 aaPredicted RBP21.33■■□□□ 1.01
CLDN4-201ENST00000340958 C8orf34Q49A92 452 aa21.33■■□□□ 1.01
CLDN4-201ENST00000340958 RGL2O15211 777 aa21.32■■□□□ 1
CLDN4-201ENST00000340958 PDE8AO60658 829 aa21.32■■□□□ 1
CLDN4-201ENST00000340958 ADRA2BP18089 450 aa21.32■■□□□ 1
CLDN4-201ENST00000340958 MX1P20591 662 aa21.32■■□□□ 1
CLDN4-201ENST00000340958 RFX5P48382 616 aaPredicted RBP21.32■■□□□ 1
CLDN4-201ENST00000340958 PTPN12Q05209 780 aaKnown RBP21.32■■□□□ 1
CLDN4-201ENST00000340958 IFIT5Q13325 482 aaKnown RBP21.32■■□□□ 1
CLDN4-201ENST00000340958 BMP2KLQ5H9B9 411 aa21.32■■□□□ 1
CLDN4-201ENST00000340958 NUTM1Q86Y26 1132 aa21.32■■□□□ 1
CLDN4-201ENST00000340958 SETDB2Q96T68 719 aa21.32■■□□□ 1
CLDN4-201ENST00000340958 IFIT2P09913 472 aaKnown RBP21.31■■□□□ 1
CLDN4-201ENST00000340958 CTSWP56202 376 aa21.31■■□□□ 1
CLDN4-201ENST00000340958 NPHP1O15259 732 aa21.3■■□□□ 1
CLDN4-201ENST00000340958 PDE1AP54750 535 aa21.3■■□□□ 1
CLDN4-201ENST00000340958 TTC22Q5TAA0 569 aa21.3■■□□□ 1
CLDN4-201ENST00000340958 TBC1D9BQ66K14 1250 aa21.3■■□□□ 1
CLDN4-201ENST00000340958 PPP1R1BQ9UD71 204 aaPredicted RBP21.3■■□□□ 1
CLDN4-201ENST00000340958 HCLS1P14317 486 aaPredicted RBP21.29■■□□□ 1
CLDN4-201ENST00000340958 USP42Q9H9J4 1324 aaKnown RBP21.29■■□□□ 1
CLDN4-201ENST00000340958 AACSQ86V21 672 aa21.29■■□□□ 1
CLDN4-201ENST00000340958 GPATCH3Q96I76 525 aa21.29■■□□□ 1
CLDN4-201ENST00000340958 BCL2L12Q9HB09 334 aa21.29■■□□□ 1
CLDN4-201ENST00000340958 BCORQ6W2J9 1755 aa21.28■■□□□ 1
CLDN4-201ENST00000340958 ANKRD18BA2A2Z9 1011 aa21.28■■□□□ 1
CLDN4-201ENST00000340958 SASH1O94885 1247 aa21.28■■□□□ 1
CLDN4-201ENST00000340958 NTSR2O95665 410 aa21.28■■□□□ 1
CLDN4-201ENST00000340958 CSF1RP07333 972 aa21.28■■□□□ 1
CLDN4-201ENST00000340958 TTLL11Q8NHH1 800 aa21.28■■□□□ 1
CLDN4-201ENST00000340958 ZNF594Q96JF6 807 aaPredicted RBP21.28■■□□□ 1
CLDN4-201ENST00000340958 NYXQ9GZU5 481 aa21.28■■□□□ 1
CLDN4-201ENST00000340958 TSHZ3Q63HK5 1081 aa21.27■■□□□ 1
CLDN4-201ENST00000340958 NBPF5PQ86XG9 351 aaPredicted RBP21.27■■□□□ 1
CLDN4-201ENST00000340958 ITGA6P23229 1130 aa21.27■□□□□ 0.99
CLDN4-201ENST00000340958 POLD1P28340 1107 aa21.27■□□□□ 0.99
CLDN4-201ENST00000340958 OSBPL3Q9H4L5 887 aa21.27■□□□□ 0.99
CLDN4-201ENST00000340958 IL15P40933 162 aaPredicted RBP21.26■□□□□ 0.99
CLDN4-201ENST00000340958 TFCP2Q12800 502 aa21.26■□□□□ 0.99
CLDN4-201ENST00000340958 GREM2Q9H772 168 aa21.26■□□□□ 0.99
CLDN4-201ENST00000340958 SCN7AQ01118 1682 aa21.26■□□□□ 0.99
CLDN4-201ENST00000340958 EYA2O00167 538 aa21.25■□□□□ 0.99
CLDN4-201ENST00000340958 GSPT1P15170 499 aaKnown RBP21.25■□□□□ 0.99
CLDN4-201ENST00000340958 GYS1P13807 737 aa21.25■□□□□ 0.99
CLDN4-201ENST00000340958 ERFEQ4G0M1 354 aa21.25■□□□□ 0.99
CLDN4-201ENST00000340958 CCDC152Q4G0S7 254 aa21.25■□□□□ 0.99
CLDN4-201ENST00000340958 TPTE2Q6XPS3 522 aa21.25■□□□□ 0.99
CLDN4-201ENST00000340958 STAP2Q9UGK3 403 aa21.25■□□□□ 0.99
CLDN4-201ENST00000340958 TRIM6-TRIM34B2RNG4 842 aa21.24■□□□□ 0.99
CLDN4-201ENST00000340958 CIAO1O76071 339 aa21.24■□□□□ 0.99
CLDN4-201ENST00000340958 CCDC8Q9H0W5 538 aaPredicted RBP21.24■□□□□ 0.99
CLDN4-201ENST00000340958 UPF2Q9HAU5 1272 aaKnown RBP21.24■□□□□ 0.99
CLDN4-201ENST00000340958 ERC2O15083 957 aa21.23■□□□□ 0.99
CLDN4-201ENST00000340958 AOX1Q06278 1338 aa21.23■□□□□ 0.99
CLDN4-201ENST00000340958 SALL3Q9BXA9 1300 aa21.23■□□□□ 0.99
CLDN4-201ENST00000340958 LRRC24Q50LG9 513 aa21.22■□□□□ 0.99
CLDN4-201ENST00000340958 CASC1Q6TDU7 716 aa21.22■□□□□ 0.99
CLDN4-201ENST00000340958 LDHAL6AQ6ZMR3 332 aa21.22■□□□□ 0.99
CLDN4-201ENST00000340958 EAF2Q96CJ1 260 aaPredicted RBP21.22■□□□□ 0.99
CLDN4-201ENST00000340958 CNNM1Q9NRU3 951 aa21.22■□□□□ 0.99
CLDN4-201ENST00000340958 CDC45O75419 566 aa21.22■□□□□ 0.99
CLDN4-201ENST00000340958 RILPL2Q969X0 211 aa21.22■□□□□ 0.99
CLDN4-201ENST00000340958 FHDC1Q9C0D6 1143 aaPredicted RBP21.22■□□□□ 0.99
CLDN4-201ENST00000340958 ECHDC1Q9NTX5 307 aa21.22■□□□□ 0.99
CLDN4-201ENST00000340958 CEP126Q9P2H0 1117 aa21.22■□□□□ 0.99
CLDN4-201ENST00000340958 FBXO3Q9UK99 471 aa21.22■□□□□ 0.99
CLDN4-201ENST00000340958 TTC41PQ6P2S7 1318 aa21.22■□□□□ 0.99
CLDN4-201ENST00000340958 SDSP20132 328 aa21.21■□□□□ 0.99
CLDN4-201ENST00000340958 TNNI3KQ59H18 835 aa21.21■□□□□ 0.99
CLDN4-201ENST00000340958 ATG9AQ7Z3C6 839 aa21.21■□□□□ 0.99
CLDN4-201ENST00000340958 PUS3Q9BZE2 481 aaKnown RBP21.21■□□□□ 0.99
CLDN4-201ENST00000340958 FPGT-TNNI3KV9GXZ4 949 aa21.21■□□□□ 0.99
CLDN4-201ENST00000340958 NLGN1Q8N2Q7 840 aa21.2■□□□□ 0.98
CLDN4-201ENST00000340958 CARMIL3Q8ND23 1372 aa21.2■□□□□ 0.98
CLDN4-201ENST00000340958 MMP10P09238 476 aa21.2■□□□□ 0.98
CLDN4-201ENST00000340958 NFIXQ14938 502 aa21.2■□□□□ 0.98
CLDN4-201ENST00000340958 NEUROD6Q96NK8 337 aa21.2■□□□□ 0.98
CLDN4-201ENST00000340958 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP21.2■□□□□ 0.98
CLDN4-201ENST00000340958 GLRX3O76003 335 aaKnown RBP21.19■□□□□ 0.98
CLDN4-201ENST00000340958 METTL24Q5JXM2 366 aa21.19■□□□□ 0.98
CLDN4-201ENST00000340958 MPHOSPH8Q99549 860 aa21.19■□□□□ 0.98
CLDN4-201ENST00000340958 ANP32EQ9BTT0 268 aa21.19■□□□□ 0.98
CLDN4-201ENST00000340958 MYH3P11055 1940 aa21.18■□□□□ 0.98
CLDN4-201ENST00000340958 IGHMBP2P38935 993 aaKnown RBP21.18■□□□□ 0.98
CLDN4-201ENST00000340958 KLHL34Q8N239 644 aa21.18■□□□□ 0.98
CLDN4-201ENST00000340958 NLRP3Q96P20 1036 aa21.18■□□□□ 0.98
CLDN4-201ENST00000340958 MFAP1P55081 439 aaKnown RBP21.18■□□□□ 0.98
CLDN4-201ENST00000340958 AKAP2Q9Y2D5 859 aa21.18■□□□□ 0.98
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms