RNA–Protein interactions for RNA: ENST00000336873.9

HPS4-201, Transcript of HPS4, biogenesis of lysosomal organelles complex 3 subunit 2, humanhuman

APPRIS P1 TSL 5 BASIC

Gene HPS4, Length 3,786 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HPS4-201ENST00000336873 SBNO1A3KN83 1393 aa9.69□□□□□ -0.86
HPS4-201ENST00000336873 USP32Q8NFA0 1604 aa9.69□□□□□ -0.86
HPS4-201ENST00000336873 CCDC171Q6TFL3 1326 aa9.69□□□□□ -0.86
HPS4-201ENST00000336873 EPHA10Q5JZY3 1008 aa9.69□□□□□ -0.86
HPS4-201ENST00000336873 ZHX1Q9UKY1 873 aaPredicted RBP9.69□□□□□ -0.86
HPS4-201ENST00000336873 COL3A1P02461 1466 aaPredicted RBP9.68□□□□□ -0.86
HPS4-201ENST00000336873 PNPLA6Q8IY17 1366 aa9.68□□□□□ -0.86
HPS4-201ENST00000336873 NCBP3Q53F19 620 aaKnown RBP9.68□□□□□ -0.86
HPS4-201ENST00000336873 PI16Q6UXB8 463 aa9.68□□□□□ -0.86
HPS4-201ENST00000336873 LDHAL6AQ6ZMR3 332 aa9.68□□□□□ -0.86
HPS4-201ENST00000336873 TTLL7Q6ZT98 887 aa9.68□□□□□ -0.86
HPS4-201ENST00000336873 IFNL2Q8IZJ0 200 aa9.68□□□□□ -0.86
HPS4-201ENST00000336873 CCDC24Q8N4L8 307 aa9.68□□□□□ -0.86
HPS4-201ENST00000336873 GJB4Q9NTQ9 266 aa9.68□□□□□ -0.86
HPS4-201ENST00000336873 KIF3AQ9Y496 699 aa9.68□□□□□ -0.86
HPS4-201ENST00000336873 MINDY4BA8MYZ0 360 aa9.68□□□□□ -0.86
HPS4-201ENST00000336873 SNAP23O00161 211 aa9.68□□□□□ -0.86
HPS4-201ENST00000336873 SLC27A2O14975 620 aa9.68□□□□□ -0.86
HPS4-201ENST00000336873 MAPK8IP2Q13387 824 aaPredicted RBP9.68□□□□□ -0.86
HPS4-201ENST00000336873 COL9A3Q14050 684 aaPredicted RBP9.68□□□□□ -0.86
HPS4-201ENST00000336873 SKIDA1Q1XH10 827 aa9.68□□□□□ -0.86
HPS4-201ENST00000336873 RAD50Q92878 1312 aa9.68□□□□□ -0.86
HPS4-201ENST00000336873 ARHGEF28Q8N1W1 1705 aaKnown RBP9.68□□□□□ -0.86
HPS4-201ENST00000336873 CPS1P31327 1500 aa9.68□□□□□ -0.86
HPS4-201ENST00000336873 TUBGCP6Q96RT7 1819 aa9.68□□□□□ -0.86
HPS4-201ENST00000336873 LRMPQ12912 555 aa9.68□□□□□ -0.86
HPS4-201ENST00000336873 NOLC1Q14978 699 aaKnown RBP eCLIP9.68□□□□□ -0.86
HPS4-201ENST00000336873 ACSBG1Q96GR2 724 aa9.68□□□□□ -0.86
HPS4-201ENST00000336873 ZKSCAN3Q9BRR0 538 aa9.68□□□□□ -0.86
HPS4-201ENST00000336873 GPHNQ9NQX3 736 aaPredicted RBP9.68□□□□□ -0.86
HPS4-201ENST00000336873 NRDCO43847 1150 aa9.67□□□□□ -0.86
HPS4-201ENST00000336873 SNRPA1P09661 255 aaKnown RBP9.67□□□□□ -0.86
HPS4-201ENST00000336873 ZSCAN31Q96LW9 406 aaPredicted RBP9.67□□□□□ -0.86
HPS4-201ENST00000336873 MYL10Q9BUA6 226 aa9.67□□□□□ -0.86
HPS4-201ENST00000336873 IBTKQ9P2D0 1353 aaPredicted RBP9.67□□□□□ -0.86
HPS4-201ENST00000336873 A0A1B0GVL5 298 aa9.67□□□□□ -0.86
HPS4-201ENST00000336873 TRIM29Q14134 588 aa9.67□□□□□ -0.86
HPS4-201ENST00000336873 VPS53Q5VIR6 699 aa9.67□□□□□ -0.86
HPS4-201ENST00000336873 FSIP1Q8NA03 581 aa9.67□□□□□ -0.86
HPS4-201ENST00000336873 A2ML1A8K2U0 1454 aa9.67□□□□□ -0.86
HPS4-201ENST00000336873 GOLGA8BA8MQT2 603 aa9.67□□□□□ -0.86
HPS4-201ENST00000336873 HIP1O00291 1037 aa9.67□□□□□ -0.86
HPS4-201ENST00000336873 SPECC1Q5M775 1068 aa9.67□□□□□ -0.86
HPS4-201ENST00000336873 PUS3Q9BZE2 481 aaKnown RBP9.67□□□□□ -0.86
HPS4-201ENST00000336873 DDX21Q9NR30 783 aaKnown RBP eCLIP9.67□□□□□ -0.86
HPS4-201ENST00000336873 CLIP2Q9UDT6 1046 aa9.67□□□□□ -0.86
HPS4-201ENST00000336873 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP9.67□□□□□ -0.86
HPS4-201ENST00000336873 SASH1O94885 1247 aa9.66□□□□□ -0.86
HPS4-201ENST00000336873 ANAPC15P60006 121 aa9.66□□□□□ -0.86
HPS4-201ENST00000336873 LRRC24Q50LG9 513 aa9.66□□□□□ -0.86
HPS4-201ENST00000336873 SAMD1Q6SPF0 538 aaPredicted RBP9.66□□□□□ -0.86
HPS4-201ENST00000336873 TTC6Q86TZ1 520 aa9.66□□□□□ -0.86
HPS4-201ENST00000336873 CCAR1Q8IX12 1150 aaKnown RBP9.66□□□□□ -0.86
HPS4-201ENST00000336873 SYNE4Q8N205 404 aa9.66□□□□□ -0.86
HPS4-201ENST00000336873 TRMT112Q9UI30 125 aaKnown RBP9.66□□□□□ -0.86
HPS4-201ENST00000336873 IGSF1Q8N6C5 1336 aa9.66□□□□□ -0.86
HPS4-201ENST00000336873 ADGRB3O60242 1522 aa9.66□□□□□ -0.86
HPS4-201ENST00000336873 TPM2P07951 284 aa9.66□□□□□ -0.86
HPS4-201ENST00000336873 KLHL10Q6JEL2 608 aa9.66□□□□□ -0.86
HPS4-201ENST00000336873 PI4K2BQ8TCG2 481 aa9.66□□□□□ -0.86
HPS4-201ENST00000336873 ZNF445P59923 1031 aa9.66□□□□□ -0.86
HPS4-201ENST00000336873 ANKRD1Q15327 319 aa9.66□□□□□ -0.86
HPS4-201ENST00000336873 SIRT1Q96EB6 747 aa9.66□□□□□ -0.86
HPS4-201ENST00000336873 LSG1Q9H089 658 aaKnown RBP9.66□□□□□ -0.86
HPS4-201ENST00000336873 NRBP1Q9UHY1 535 aa9.66□□□□□ -0.86
HPS4-201ENST00000336873 USP6P35125 1406 aa9.66□□□□□ -0.86
HPS4-201ENST00000336873 PTPRMP28827 1452 aa9.65□□□□□ -0.86
HPS4-201ENST00000336873 TYRO3Q06418 890 aa9.65□□□□□ -0.86
HPS4-201ENST00000336873 GCKRQ14397 625 aa9.65□□□□□ -0.86
HPS4-201ENST00000336873 CMTR1Q8N1G2 835 aaKnown RBP9.65□□□□□ -0.86
HPS4-201ENST00000336873 MPHOSPH8Q99549 860 aa9.65□□□□□ -0.86
HPS4-201ENST00000336873 SH2B1Q9NRF2 756 aaPredicted RBP9.65□□□□□ -0.86
HPS4-201ENST00000336873 KLF18A0A0U1RQI7 1052 aa9.65□□□□□ -0.86
HPS4-201ENST00000336873 hCG_1642624A0A1W2PR95 340 aa9.65□□□□□ -0.86
HPS4-201ENST00000336873 AKAP17AQ02040 695 aaKnown RBP9.65□□□□□ -0.86
HPS4-201ENST00000336873 CPLX2Q6PUV4 134 aaKnown RBP9.65□□□□□ -0.86
HPS4-201ENST00000336873 KIF6Q6ZMV9 814 aa9.65□□□□□ -0.86
HPS4-201ENST00000336873 DBNLQ9UJU6 430 aaKnown RBP9.65□□□□□ -0.86
HPS4-201ENST00000336873 NR1I2O75469 434 aa9.65□□□□□ -0.87
HPS4-201ENST00000336873 SERPINC1P01008 464 aa9.65□□□□□ -0.87
HPS4-201ENST00000336873 KCNQ4P56696 695 aa9.65□□□□□ -0.87
HPS4-201ENST00000336873 IFIT5Q13325 482 aaKnown RBP9.65□□□□□ -0.87
HPS4-201ENST00000336873 CAMSAP1Q5T5Y3 1602 aa9.65□□□□□ -0.87
HPS4-201ENST00000336873 C8orf76Q96K31 380 aa9.65□□□□□ -0.87
HPS4-201ENST00000336873 EIF2AK3Q9NZJ5 1116 aaKnown RBP9.65□□□□□ -0.87
HPS4-201ENST00000336873 DIP2BQ9P265 1576 aa9.65□□□□□ -0.87
HPS4-201ENST00000336873 ORC3Q9UBD5 711 aaPredicted RBP9.65□□□□□ -0.87
HPS4-201ENST00000336873 ALKQ9UM73 1620 aa9.64□□□□□ -0.87
HPS4-201ENST00000336873 PTCH1Q13635 1447 aa9.64□□□□□ -0.87
HPS4-201ENST00000336873 KIAA0232Q92628 1395 aa9.64□□□□□ -0.87
HPS4-201ENST00000336873 CPLX3Q8WVH0 158 aa9.64□□□□□ -0.87
HPS4-201ENST00000336873 SCAND2PQ9GZW5 306 aaPredicted RBP9.64□□□□□ -0.87
HPS4-201ENST00000336873 MTMR6Q9Y217 621 aa9.64□□□□□ -0.87
HPS4-201ENST00000336873 NEURL4Q96JN8 1562 aa9.64□□□□□ -0.87
HPS4-201ENST00000336873 PLEKHG1Q9ULL1 1385 aa9.64□□□□□ -0.87
HPS4-201ENST00000336873 A0A1B0GUL7 405 aa9.64□□□□□ -0.87
HPS4-201ENST00000336873 OFD1O75665 1012 aa9.64□□□□□ -0.87
HPS4-201ENST00000336873 LMOD1P29536 600 aaPredicted RBP9.64□□□□□ -0.87
HPS4-201ENST00000336873 MCMDC2Q4G0Z9 681 aa9.64□□□□□ -0.87
HPS4-201ENST00000336873 TNNI3KQ59H18 835 aa9.64□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 51.9 ms