RNA–Protein interactions for RNA: ENST00000335551.11

CSMD1-201, Transcript of CUB and Sushi multiple domains 1, humanhuman

TSL 1 (best)

Gene CSMD1, Length 12,134 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD1-201ENST00000335551 TMEM87AQ8NBN3 555 aa7.01□□□□□ -1.29
CSMD1-201ENST00000335551 SYNCQ9H7C4 482 aa7.01□□□□□ -1.29
CSMD1-201ENST00000335551 WHAMMQ8TF30 809 aa7.01□□□□□ -1.29
CSMD1-201ENST00000335551 GOLGA8BA8MQT2 603 aa7.01□□□□□ -1.29
CSMD1-201ENST00000335551 MX1P20591 662 aa7.01□□□□□ -1.29
CSMD1-201ENST00000335551 AIDAQ96BJ3 306 aa7.01□□□□□ -1.29
CSMD1-201ENST00000335551 SSFA2P28290 1259 aa7.01□□□□□ -1.29
CSMD1-201ENST00000335551 CCDC102BQ68D86 513 aa7.01□□□□□ -1.29
CSMD1-201ENST00000335551 PPP1R9BQ96SB3 815 aa7.01□□□□□ -1.29
CSMD1-201ENST00000335551 ZSCAN16Q9H4T2 348 aaPredicted RBP7.01□□□□□ -1.29
CSMD1-201ENST00000335551 CETN3O15182 167 aa7.01□□□□□ -1.29
CSMD1-201ENST00000335551 BAG4O95429 457 aaKnown RBP7.01□□□□□ -1.29
CSMD1-201ENST00000335551 KRT13P13646 458 aa7.01□□□□□ -1.29
CSMD1-201ENST00000335551 ATF3P18847 181 aa7.01□□□□□ -1.29
CSMD1-201ENST00000335551 TERF1P54274 439 aa7.01□□□□□ -1.29
CSMD1-201ENST00000335551 FERMT3Q86UX7 667 aa7.01□□□□□ -1.29
CSMD1-201ENST00000335551 AFAP1L2Q8N4X5 818 aa7.01□□□□□ -1.29
CSMD1-201ENST00000335551 RNF8O76064 485 aa7.01□□□□□ -1.29
CSMD1-201ENST00000335551 DBN1Q16643 649 aa7.01□□□□□ -1.29
CSMD1-201ENST00000335551 Q9H521 79 aa7.01□□□□□ -1.29
CSMD1-201ENST00000335551 TCP11L1Q9NUJ3 509 aa7.01□□□□□ -1.29
CSMD1-201ENST00000335551 GOLGA6CA6NDK9 693 aa7.01□□□□□ -1.29
CSMD1-201ENST00000335551 NDC80O14777 642 aa7.01□□□□□ -1.29
CSMD1-201ENST00000335551 BMP15O95972 392 aa7.01□□□□□ -1.29
CSMD1-201ENST00000335551 GOLGA6DP0CG33 693 aa7.01□□□□□ -1.29
CSMD1-201ENST00000335551 ARL1P40616 181 aaPredicted RBP7.01□□□□□ -1.29
CSMD1-201ENST00000335551 RASSF2P50749 326 aa7.01□□□□□ -1.29
CSMD1-201ENST00000335551 GPR161Q8N6U8 529 aaKnown RBP7.01□□□□□ -1.29
CSMD1-201ENST00000335551 EXOC1Q9NV70 894 aa7.01□□□□□ -1.29
CSMD1-201ENST00000335551 GOLGA6AQ9NYA3 693 aa7.01□□□□□ -1.29
CSMD1-201ENST00000335551 NLRP5P59047 1200 aa7.01□□□□□ -1.29
CSMD1-201ENST00000335551 CPLX3Q8WVH0 158 aa7.01□□□□□ -1.29
CSMD1-201ENST00000335551 ERO1AQ96HE7 468 aa7.01□□□□□ -1.29
CSMD1-201ENST00000335551 PPFIA3O75145 1194 aa7□□□□□ -1.29
CSMD1-201ENST00000335551 ZC4H2Q9NQZ6 224 aa7□□□□□ -1.29
CSMD1-201ENST00000335551 CCDC194A0A1B0GVG4 234 aa7□□□□□ -1.29
CSMD1-201ENST00000335551 GSTA5Q7RTV2 222 aa7□□□□□ -1.29
CSMD1-201ENST00000335551 LARSQ9P2J5 1176 aaKnown RBP7□□□□□ -1.29
CSMD1-201ENST00000335551 HCLS1P14317 486 aaPredicted RBP7□□□□□ -1.29
CSMD1-201ENST00000335551 RAB11FIP4Q86YS3 637 aa7□□□□□ -1.29
CSMD1-201ENST00000335551 HDAC9Q9UKV0 1011 aa7□□□□□ -1.29
CSMD1-201ENST00000335551 NUTM2DQ5VT03 806 aaPredicted RBP7□□□□□ -1.29
CSMD1-201ENST00000335551 NUTM1Q86Y26 1132 aa7□□□□□ -1.29
CSMD1-201ENST00000335551 GTF3C6Q969F1 213 aa7□□□□□ -1.29
CSMD1-201ENST00000335551 MPHOSPH8Q99549 860 aa7□□□□□ -1.29
CSMD1-201ENST00000335551 TBC1D2Q9BYX2 928 aa7□□□□□ -1.29
CSMD1-201ENST00000335551 GLRX3O76003 335 aaKnown RBP7□□□□□ -1.29
CSMD1-201ENST00000335551 SNX16P57768 344 aa7□□□□□ -1.29
CSMD1-201ENST00000335551 PPFIA1Q13136 1202 aa7□□□□□ -1.29
CSMD1-201ENST00000335551 PNISRQ8TF01 805 aaKnown RBP7□□□□□ -1.29
CSMD1-201ENST00000335551 ARHGAP5Q13017 1502 aa7□□□□□ -1.29
CSMD1-201ENST00000335551 FKBP4Q02790 459 aaKnown RBP eCLIP7□□□□□ -1.29
CSMD1-201ENST00000335551 GKAP1Q5VSY0 366 aaPredicted RBP7□□□□□ -1.29
CSMD1-201ENST00000335551 RUFY3Q7L099 469 aa7□□□□□ -1.29
CSMD1-201ENST00000335551 RPAINQ86UA6 219 aa7□□□□□ -1.29
CSMD1-201ENST00000335551 HMG20BQ9P0W2 317 aa7□□□□□ -1.29
CSMD1-201ENST00000335551 TXNDC16Q9P2K2 825 aa7□□□□□ -1.29
CSMD1-201ENST00000335551 SSRP1Q08945 709 aaKnown RBP7□□□□□ -1.29
CSMD1-201ENST00000335551 CUL5Q93034 780 aa7□□□□□ -1.29
CSMD1-201ENST00000335551 I3L4J1 428 aa7□□□□□ -1.29
CSMD1-201ENST00000335551 TAOK1Q7L7X3 1001 aa7□□□□□ -1.29
CSMD1-201ENST00000335551 SIL1Q9H173 461 aa7□□□□□ -1.29
CSMD1-201ENST00000335551 RNF216Q9NWF9 866 aaPredicted RBP7□□□□□ -1.29
CSMD1-201ENST00000335551 SLC12A7Q9Y666 1083 aa7□□□□□ -1.29
CSMD1-201ENST00000335551 HDGFL1Q5TGJ6 251 aa6.99□□□□□ -1.29
CSMD1-201ENST00000335551 PSMD1Q99460 953 aa6.99□□□□□ -1.29
CSMD1-201ENST00000335551 FAN1Q9Y2M0 1017 aa6.99□□□□□ -1.29
CSMD1-201ENST00000335551 PFDN1O60925 122 aa6.99□□□□□ -1.29
CSMD1-201ENST00000335551 PHLDB3Q6NSJ2 640 aa6.99□□□□□ -1.29
CSMD1-201ENST00000335551 ERMNQ8TAM6 284 aa6.99□□□□□ -1.29
CSMD1-201ENST00000335551 TRIM47Q96LD4 638 aa6.99□□□□□ -1.29
CSMD1-201ENST00000335551 PPP2R3AQ06190 1150 aa6.99□□□□□ -1.29
CSMD1-201ENST00000335551 ERCC3P19447 782 aa6.99□□□□□ -1.29
CSMD1-201ENST00000335551 CLUL1Q15846 466 aa6.99□□□□□ -1.29
CSMD1-201ENST00000335551 C11orf95C9JLR9 678 aaPredicted RBP6.99□□□□□ -1.29
CSMD1-201ENST00000335551 SYKP43405 635 aa6.99□□□□□ -1.29
CSMD1-201ENST00000335551 SATB1Q01826 763 aa6.99□□□□□ -1.29
CSMD1-201ENST00000335551 KCNG4Q8TDN1 519 aa6.99□□□□□ -1.29
CSMD1-201ENST00000335551 ANKRD30BQ9BXX2 1392 aa6.99□□□□□ -1.29
CSMD1-201ENST00000335551 SRGAP3O43295 1099 aa6.99□□□□□ -1.29
CSMD1-201ENST00000335551 SLC4A2P04920 1241 aa6.99□□□□□ -1.29
CSMD1-201ENST00000335551 HVCN1Q96D96 273 aa6.99□□□□□ -1.29
CSMD1-201ENST00000335551 PPP1R1BQ9UD71 204 aaPredicted RBP6.99□□□□□ -1.29
CSMD1-201ENST00000335551 COG7P83436 770 aa6.99□□□□□ -1.29
CSMD1-201ENST00000335551 MUM1Q2TAK8 710 aa6.99□□□□□ -1.29
CSMD1-201ENST00000335551 CATIPQ7Z7H3 387 aa6.99□□□□□ -1.29
CSMD1-201ENST00000335551 GSDMBQ8TAX9 411 aa6.99□□□□□ -1.29
CSMD1-201ENST00000335551 RNF41Q9H4P4 317 aaPredicted RBP6.99□□□□□ -1.29
CSMD1-201ENST00000335551 PLCB1Q9NQ66 1216 aa6.99□□□□□ -1.29
CSMD1-201ENST00000335551 RLBP1P12271 317 aa6.99□□□□□ -1.29
CSMD1-201ENST00000335551 CALCOCO2Q13137 446 aa6.99□□□□□ -1.29
CSMD1-201ENST00000335551 CNGA4Q8IV77 575 aa6.99□□□□□ -1.29
CSMD1-201ENST00000335551 XAB2Q9HCS7 855 aaKnown RBP6.99□□□□□ -1.29
CSMD1-201ENST00000335551 KCNK9Q9NPC2 374 aa6.99□□□□□ -1.29
CSMD1-201ENST00000335551 PPP2R1AP30153 589 aa6.99□□□□□ -1.29
CSMD1-201ENST00000335551 ANO6Q4KMQ2 910 aa6.99□□□□□ -1.29
CSMD1-201ENST00000335551 PRPF40BQ6NWY9 871 aaKnown RBP6.99□□□□□ -1.29
CSMD1-201ENST00000335551 SEPT10Q9P0V9 454 aa6.99□□□□□ -1.29
CSMD1-201ENST00000335551 FCHSD2O94868 740 aa6.98□□□□□ -1.29
CSMD1-201ENST00000335551 VIMP08670 466 aaKnown RBP6.98□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 48.6 ms