RNA–Protein interactions for RNA: ENST00000330374.6

VMA21-201, Transcript of VMA21, vacuolar ATPase assembly factor, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VMA21, Length 4,717 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VMA21-201ENST00000330374 SCAND2PQ9GZW5 306 aaPredicted RBP9.28□□□□□ -0.92
VMA21-201ENST00000330374 CLSTN2Q9H4D0 955 aa9.28□□□□□ -0.92
VMA21-201ENST00000330374 A0A0D9SFI3 127 aa9.28□□□□□ -0.92
VMA21-201ENST00000330374 CWF19L2Q2TBE0 894 aaKnown RBP9.28□□□□□ -0.92
VMA21-201ENST00000330374 KMT5BQ4FZB7 885 aa9.28□□□□□ -0.92
VMA21-201ENST00000330374 BRF1Q92994 677 aa9.28□□□□□ -0.92
VMA21-201ENST00000330374 GPATCH3Q96I76 525 aa9.28□□□□□ -0.92
VMA21-201ENST00000330374 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP9.28□□□□□ -0.92
VMA21-201ENST00000330374 CHGBP05060 677 aa9.28□□□□□ -0.92
VMA21-201ENST00000330374 PDCP20941 246 aa9.28□□□□□ -0.92
VMA21-201ENST00000330374 PLA2G4DQ86XP0 818 aa9.28□□□□□ -0.92
VMA21-201ENST00000330374 SLC26A8Q96RN1 970 aa9.28□□□□□ -0.92
VMA21-201ENST00000330374 DDX19AQ9NUU7 478 aaKnown RBP9.28□□□□□ -0.92
VMA21-201ENST00000330374 TLR7Q9NYK1 1049 aaKnown RBP9.28□□□□□ -0.92
VMA21-201ENST00000330374 KIF18AQ8NI77 898 aa9.27□□□□□ -0.92
VMA21-201ENST00000330374 DDX41Q9UJV9 622 aaKnown RBP9.27□□□□□ -0.92
VMA21-201ENST00000330374 NPHP3Q7Z494 1330 aa9.27□□□□□ -0.93
VMA21-201ENST00000330374 CCDC69A6NI79 296 aa9.27□□□□□ -0.93
VMA21-201ENST00000330374 MKRN3Q13064 507 aaKnown RBP9.27□□□□□ -0.93
VMA21-201ENST00000330374 NECTIN1Q15223 517 aa9.27□□□□□ -0.93
VMA21-201ENST00000330374 PAXBP1Q9Y5B6 917 aa9.27□□□□□ -0.93
VMA21-201ENST00000330374 LRRC8AQ8IWT6 810 aa9.27□□□□□ -0.93
VMA21-201ENST00000330374 ESF1Q9H501 851 aaKnown RBP9.27□□□□□ -0.93
VMA21-201ENST00000330374 PSMA5P28066 241 aa9.27□□□□□ -0.93
VMA21-201ENST00000330374 GTF3C6Q969F1 213 aa9.27□□□□□ -0.93
VMA21-201ENST00000330374 LGR6Q9HBX8 967 aa9.27□□□□□ -0.93
VMA21-201ENST00000330374 FBXO38Q6PIJ6 1188 aa9.26□□□□□ -0.93
VMA21-201ENST00000330374 IL17RAQ96F46 866 aa9.26□□□□□ -0.93
VMA21-201ENST00000330374 HSP90AB4PQ58FF6 505 aa9.26□□□□□ -0.93
VMA21-201ENST00000330374 ZNF589Q86UQ0 364 aaPredicted RBP9.26□□□□□ -0.93
VMA21-201ENST00000330374 KRT222Q8N1A0 295 aa9.26□□□□□ -0.93
VMA21-201ENST00000330374 TDRD7Q8NHU6 1098 aaKnown RBP9.26□□□□□ -0.93
VMA21-201ENST00000330374 SLFN14P0C7P3 912 aa9.26□□□□□ -0.93
VMA21-201ENST00000330374 CCDC129Q6ZRS4 1044 aa9.26□□□□□ -0.93
VMA21-201ENST00000330374 BEND3Q5T5X7 828 aa9.26□□□□□ -0.93
VMA21-201ENST00000330374 CCAR1Q8IX12 1150 aaKnown RBP9.26□□□□□ -0.93
VMA21-201ENST00000330374 OSCARQ8IYS5 282 aa9.26□□□□□ -0.93
VMA21-201ENST00000330374 AOPEPQ8N6M6 819 aa9.26□□□□□ -0.93
VMA21-201ENST00000330374 EVI5LQ96CN4 794 aa9.26□□□□□ -0.93
VMA21-201ENST00000330374 DIP2CQ9Y2E4 1556 aa9.26□□□□□ -0.93
VMA21-201ENST00000330374 CCT2P78371 535 aaKnown RBP9.25□□□□□ -0.93
VMA21-201ENST00000330374 G3BP1Q13283 466 aaKnown RBP eCLIP9.25□□□□□ -0.93
VMA21-201ENST00000330374 TOB2Q14106 344 aaPredicted RBP9.25□□□□□ -0.93
VMA21-201ENST00000330374 MAP3K2Q9Y2U5 619 aa9.25□□□□□ -0.93
VMA21-201ENST00000330374 PREX1Q8TCU6 1659 aa9.25□□□□□ -0.93
VMA21-201ENST00000330374 BIN1O00499 593 aa9.25□□□□□ -0.93
VMA21-201ENST00000330374 RNF20Q5VTR2 975 aa9.25□□□□□ -0.93
VMA21-201ENST00000330374 ISM2Q6H9L7 571 aa9.25□□□□□ -0.93
VMA21-201ENST00000330374 EAF2Q96CJ1 260 aaPredicted RBP9.25□□□□□ -0.93
VMA21-201ENST00000330374 TTC21AQ8NDW8 1320 aa9.25□□□□□ -0.93
VMA21-201ENST00000330374 SMC2O95347 1197 aa9.25□□□□□ -0.93
VMA21-201ENST00000330374 RPS6KB1P23443 525 aa9.25□□□□□ -0.93
VMA21-201ENST00000330374 ERCC6LQ2NKX8 1250 aa9.25□□□□□ -0.93
VMA21-201ENST00000330374 ZNF397Q8NF99 534 aaPredicted RBP9.25□□□□□ -0.93
VMA21-201ENST00000330374 TM6SF1Q9BZW5 370 aa9.25□□□□□ -0.93
VMA21-201ENST00000330374 TTC41PQ6P2S7 1318 aa9.25□□□□□ -0.93
VMA21-201ENST00000330374 EPB41L2O43491 1005 aaKnown RBP9.24□□□□□ -0.93
VMA21-201ENST00000330374 ME1P48163 572 aa9.24□□□□□ -0.93
VMA21-201ENST00000330374 LRRN4CLQ8ND94 238 aa9.24□□□□□ -0.93
VMA21-201ENST00000330374 ROBO2Q9HCK4 1378 aa9.24□□□□□ -0.93
VMA21-201ENST00000330374 TERF2Q15554 542 aa9.24□□□□□ -0.93
VMA21-201ENST00000330374 PTPN21Q16825 1174 aa9.24□□□□□ -0.93
VMA21-201ENST00000330374 MPRIPQ6WCQ1 1025 aa9.24□□□□□ -0.93
VMA21-201ENST00000330374 MAP4K1Q92918 833 aa9.24□□□□□ -0.93
VMA21-201ENST00000330374 DNAJC2Q99543 621 aaKnown RBP9.24□□□□□ -0.93
VMA21-201ENST00000330374 CEP170BQ9Y4F5 1589 aaPredicted RBP9.24□□□□□ -0.93
VMA21-201ENST00000330374 CSB-PGBD3P0DP91 1061 aa9.24□□□□□ -0.93
VMA21-201ENST00000330374 NKX1-1Q15270 411 aaPredicted RBP9.24□□□□□ -0.93
VMA21-201ENST00000330374 PROSER3Q2NL68 480 aa9.24□□□□□ -0.93
VMA21-201ENST00000330374 CCDC73Q6ZRK6 1079 aa9.24□□□□□ -0.93
VMA21-201ENST00000330374 Q6ZUG5 572 aa9.24□□□□□ -0.93
VMA21-201ENST00000330374 SEC62Q99442 399 aaKnown RBP9.24□□□□□ -0.93
VMA21-201ENST00000330374 ELP1O95163 1332 aa9.24□□□□□ -0.93
VMA21-201ENST00000330374 FLT4P35916 1363 aa9.24□□□□□ -0.93
VMA21-201ENST00000330374 PRAMEF22A3QJZ6 481 aa9.24□□□□□ -0.93
VMA21-201ENST00000330374 KINO60870 393 aaKnown RBP9.24□□□□□ -0.93
VMA21-201ENST00000330374 GABPB1Q06547 395 aaPredicted RBP9.24□□□□□ -0.93
VMA21-201ENST00000330374 ZRSR1Q15695 479 aaKnown RBP9.24□□□□□ -0.93
VMA21-201ENST00000330374 SYT10Q6XYQ8 523 aa9.24□□□□□ -0.93
VMA21-201ENST00000330374 HOMER1Q86YM7 354 aa9.24□□□□□ -0.93
VMA21-201ENST00000330374 FAM177A1Q8N128 213 aaPredicted RBP9.24□□□□□ -0.93
VMA21-201ENST00000330374 SDF4Q9BRK5 362 aa9.24□□□□□ -0.93
VMA21-201ENST00000330374 TMX1Q9H3N1 280 aa9.24□□□□□ -0.93
VMA21-201ENST00000330374 PRM3Q9NNZ6 103 aa9.24□□□□□ -0.93
VMA21-201ENST00000330374 ARHGEF10O15013 1369 aa9.24□□□□□ -0.93
VMA21-201ENST00000330374 SETD1BQ9UPS6 1966 aaKnown RBP9.23□□□□□ -0.93
VMA21-201ENST00000330374 POLR3GO15318 223 aaPredicted RBP9.23□□□□□ -0.93
VMA21-201ENST00000330374 TEFQ10587 303 aa9.23□□□□□ -0.93
VMA21-201ENST00000330374 CHST3Q7LGC8 479 aa9.23□□□□□ -0.93
VMA21-201ENST00000330374 ARHGAP30Q7Z6I6 1101 aaPredicted RBP9.23□□□□□ -0.93
VMA21-201ENST00000330374 GOLPH3LQ9H4A5 285 aa9.23□□□□□ -0.93
VMA21-201ENST00000330374 MAP3K5Q99683 1374 aa9.23□□□□□ -0.93
VMA21-201ENST00000330374 A2ML1A8K2U0 1454 aa9.23□□□□□ -0.93
VMA21-201ENST00000330374 DLC1Q96QB1 1528 aa9.23□□□□□ -0.93
VMA21-201ENST00000330374 MORC2Q9Y6X9 1032 aaPredicted RBP9.23□□□□□ -0.93
VMA21-201ENST00000330374 GTF2E1P29083 439 aaPredicted RBP9.23□□□□□ -0.93
VMA21-201ENST00000330374 IQCB1Q15051 598 aa9.23□□□□□ -0.93
VMA21-201ENST00000330374 ANKRD1Q15327 319 aa9.23□□□□□ -0.93
VMA21-201ENST00000330374 SLFNL1Q499Z3 407 aa9.23□□□□□ -0.93
VMA21-201ENST00000330374 CALR3Q96L12 384 aaKnown RBP9.23□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 323.3 ms