RNA–Protein interactions for RNA: ENST00000302303.5

RFX3-201, Transcript of regulatory factor X3, humanhuman

TSL 1 (best) BASIC

Gene RFX3, Length 1,522 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFX3-201ENST00000302303 AAMPQ13685 434 aa11.9□□□□□ -0.5
RFX3-201ENST00000302303 POLA2Q14181 598 aa11.9□□□□□ -0.5
RFX3-201ENST00000302303 POTEDQ86YR6 584 aa11.9□□□□□ -0.5
RFX3-201ENST00000302303 SSH3Q8TE77 659 aa11.9□□□□□ -0.5
RFX3-201ENST00000302303 GREM2Q9H772 168 aa11.9□□□□□ -0.5
RFX3-201ENST00000302303 KCNA3P22001 575 aa11.89□□□□□ -0.51
RFX3-201ENST00000302303 RPAP2Q8IXW5 612 aaPredicted RBP11.89□□□□□ -0.51
RFX3-201ENST00000302303 CHMP4BQ9H444 224 aaKnown RBP11.89□□□□□ -0.51
RFX3-201ENST00000302303 SEC31BQ9NQW1 1179 aa11.89□□□□□ -0.51
RFX3-201ENST00000302303 KIF13BQ9NQT8 1826 aa11.88□□□□□ -0.51
RFX3-201ENST00000302303 GTF2E1P29083 439 aaPredicted RBP11.88□□□□□ -0.51
RFX3-201ENST00000302303 FAM161AQ3B820 660 aa11.88□□□□□ -0.51
RFX3-201ENST00000302303 ERICH6BQ5W0A0 696 aa11.88□□□□□ -0.51
RFX3-201ENST00000302303 NLRP3Q96P20 1036 aa11.88□□□□□ -0.51
RFX3-201ENST00000302303 CCDC85AQ96PX6 553 aaPredicted RBP11.88□□□□□ -0.51
RFX3-201ENST00000302303 SPON1Q9HCB6 807 aa11.88□□□□□ -0.51
RFX3-201ENST00000302303 KIAA1551Q9HCM1 1747 aa11.88□□□□□ -0.51
RFX3-201ENST00000302303 RTL9Q8NET4 1388 aa11.88□□□□□ -0.51
RFX3-201ENST00000302303 SRGNP10124 158 aa11.87□□□□□ -0.51
RFX3-201ENST00000302303 HOXA10P31260 410 aaPredicted RBP11.87□□□□□ -0.51
RFX3-201ENST00000302303 ST5P78524 1137 aa11.87□□□□□ -0.51
RFX3-201ENST00000302303 PTPN12Q05209 780 aaKnown RBP11.87□□□□□ -0.51
RFX3-201ENST00000302303 SLC51AQ86UW1 340 aa11.87□□□□□ -0.51
RFX3-201ENST00000302303 KLHDC4Q8TBB5 520 aa11.87□□□□□ -0.51
RFX3-201ENST00000302303 GOLGB1Q14789 3259 aaKnown RBP11.87□□□□□ -0.51
RFX3-201ENST00000302303 COL11A2P13942 1736 aaPredicted RBP11.86□□□□□ -0.51
RFX3-201ENST00000302303 SRGAP3O43295 1099 aa11.86□□□□□ -0.51
RFX3-201ENST00000302303 NEFLP07196 543 aa11.86□□□□□ -0.51
RFX3-201ENST00000302303 PA2G4Q9UQ80 394 aaKnown RBP11.86□□□□□ -0.51
RFX3-201ENST00000302303 HDAC5Q9UQL6 1122 aa11.86□□□□□ -0.51
RFX3-201ENST00000302303 MYH3P11055 1940 aa11.86□□□□□ -0.51
RFX3-201ENST00000302303 TAF1P21675 1872 aa11.86□□□□□ -0.51
RFX3-201ENST00000302303 ITGA6P23229 1130 aa11.86□□□□□ -0.51
RFX3-201ENST00000302303 POLD1P28340 1107 aa11.86□□□□□ -0.51
RFX3-201ENST00000302303 CHRNA5P30532 468 aa11.86□□□□□ -0.51
RFX3-201ENST00000302303 MAPK8IP2Q13387 824 aaPredicted RBP11.86□□□□□ -0.51
RFX3-201ENST00000302303 HDAC1Q13547 482 aaPredicted RBP11.86□□□□□ -0.51
RFX3-201ENST00000302303 CELF1Q92879 486 aaKnown RBP11.86□□□□□ -0.51
RFX3-201ENST00000302303 ZNF594Q96JF6 807 aaPredicted RBP11.86□□□□□ -0.51
RFX3-201ENST00000302303 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP11.86□□□□□ -0.51
RFX3-201ENST00000302303 PDE6BP35913 854 aa11.85□□□□□ -0.51
RFX3-201ENST00000302303 CCDC152Q4G0S7 254 aa11.85□□□□□ -0.51
RFX3-201ENST00000302303 PUS3Q9BZE2 481 aaKnown RBP11.85□□□□□ -0.51
RFX3-201ENST00000302303 COPRSQ9NQ92 184 aa11.85□□□□□ -0.51
RFX3-201ENST00000302303 NOP58Q9Y2X3 529 aaKnown RBP11.85□□□□□ -0.51
RFX3-201ENST00000302303 A0A0G2JLW4 131 aa11.84□□□□□ -0.51
RFX3-201ENST00000302303 HSP90B1P14625 803 aaKnown RBP11.84□□□□□ -0.51
RFX3-201ENST00000302303 ATG9AQ7Z3C6 839 aa11.84□□□□□ -0.51
RFX3-201ENST00000302303 CRAMP1Q96RY5 1269 aa11.84□□□□□ -0.51
RFX3-201ENST00000302303 DCTPP1Q9H773 170 aa11.84□□□□□ -0.51
RFX3-201ENST00000302303 RIPOR2Q9Y4F9 1068 aa11.84□□□□□ -0.51
RFX3-201ENST00000302303 CD2APQ9Y5K6 639 aa11.84□□□□□ -0.51
RFX3-201ENST00000302303 GTF3C3Q9Y5Q9 886 aa11.84□□□□□ -0.51
RFX3-201ENST00000302303 KDM2BQ8NHM5 1336 aa11.83□□□□□ -0.51
RFX3-201ENST00000302303 LRP5O75197 1615 aa11.83□□□□□ -0.51
RFX3-201ENST00000302303 NPHP1O15259 732 aa11.83□□□□□ -0.52
RFX3-201ENST00000302303 DPEP1P16444 411 aa11.83□□□□□ -0.52
RFX3-201ENST00000302303 IFIT5Q13325 482 aaKnown RBP11.83□□□□□ -0.52
RFX3-201ENST00000302303 LRRC24Q50LG9 513 aa11.83□□□□□ -0.52
RFX3-201ENST00000302303 C2CD5Q86YS7 1000 aa11.83□□□□□ -0.52
RFX3-201ENST00000302303 NLGN2Q8NFZ4 835 aa11.83□□□□□ -0.52
RFX3-201ENST00000302303 ANKRD18BA2A2Z9 1011 aa11.82□□□□□ -0.52
RFX3-201ENST00000302303 SASH1O94885 1247 aa11.82□□□□□ -0.52
RFX3-201ENST00000302303 NPR1P16066 1061 aa11.82□□□□□ -0.52
RFX3-201ENST00000302303 TGFB2P61812 414 aa11.82□□□□□ -0.52
RFX3-201ENST00000302303 RPS8P62241 208 aaKnown RBP11.82□□□□□ -0.52
RFX3-201ENST00000302303 CCDC57Q2TAC2 916 aa11.82□□□□□ -0.52
RFX3-201ENST00000302303 B4GALNT3Q6L9W6 998 aa11.82□□□□□ -0.52
RFX3-201ENST00000302303 SMC5Q8IY18 1101 aa11.82□□□□□ -0.52
RFX3-201ENST00000302303 C7orf43Q8WVR3 580 aa11.82□□□□□ -0.52
RFX3-201ENST00000302303 MASTLQ96GX5 879 aa11.82□□□□□ -0.52
RFX3-201ENST00000302303 PPP4R2Q9NY27 417 aa11.82□□□□□ -0.52
RFX3-201ENST00000302303 CHMP3Q9Y3E7 222 aa11.82□□□□□ -0.52
RFX3-201ENST00000302303 WTIPA6NIX2 430 aaPredicted RBP11.81□□□□□ -0.52
RFX3-201ENST00000302303 H0YIN7 160 aa11.81□□□□□ -0.52
RFX3-201ENST00000302303 ZBTB22O15209 634 aa11.81□□□□□ -0.52
RFX3-201ENST00000302303 GRAPQ13588 217 aa11.81□□□□□ -0.52
RFX3-201ENST00000302303 STYK1Q6J9G0 422 aa11.81□□□□□ -0.52
RFX3-201ENST00000302303 GRAPLQ8TC17 118 aaPredicted RBP11.81□□□□□ -0.52
RFX3-201ENST00000302303 FHDC1Q9C0D6 1143 aaPredicted RBP11.81□□□□□ -0.52
RFX3-201ENST00000302303 EXOC6BQ9Y2D4 811 aa11.81□□□□□ -0.52
RFX3-201ENST00000302303 DLEC1Q9Y238 1755 aa11.81□□□□□ -0.52
RFX3-201ENST00000302303 EYA2O00167 538 aa11.81□□□□□ -0.52
RFX3-201ENST00000302303 DDX46Q7L014 1031 aaKnown RBP11.81□□□□□ -0.52
RFX3-201ENST00000302303 VGLL2Q8N8G2 317 aa11.81□□□□□ -0.52
RFX3-201ENST00000302303 BSDC1Q9NW68 430 aaPredicted RBP11.81□□□□□ -0.52
RFX3-201ENST00000302303 PDZRN3Q9UPQ7 1066 aa11.81□□□□□ -0.52
RFX3-201ENST00000302303 SNED1Q8TER0 1413 aa11.8□□□□□ -0.52
RFX3-201ENST00000302303 SLX4Q8IY92 1834 aa11.8□□□□□ -0.52
RFX3-201ENST00000302303 SURF6O75683 361 aaKnown RBP11.8□□□□□ -0.52
RFX3-201ENST00000302303 CIAO1O76071 339 aa11.8□□□□□ -0.52
RFX3-201ENST00000302303 OLFM4Q6UX06 510 aa11.8□□□□□ -0.52
RFX3-201ENST00000302303 LDHAL6AQ6ZMR3 332 aa11.8□□□□□ -0.52
RFX3-201ENST00000302303 RPGRQ92834 1020 aaKnown RBP11.8□□□□□ -0.52
RFX3-201ENST00000302303 RBM17Q96I25 401 aaKnown RBP11.8□□□□□ -0.52
RFX3-201ENST00000302303 SYT17Q9BSW7 474 aa11.8□□□□□ -0.52
RFX3-201ENST00000302303 SIL1Q9H173 461 aa11.8□□□□□ -0.52
RFX3-201ENST00000302303 RWDD1Q9H446 243 aaPredicted RBP11.8□□□□□ -0.52
RFX3-201ENST00000302303 MINPP1Q9UNW1 487 aa11.8□□□□□ -0.52
RFX3-201ENST00000302303 BRCA1P38398 1863 aaKnown RBP11.79□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 15.1 ms