RNA–Protein interactions for RNA: ENST00000298130.4

SPTSSA-201, Transcript of serine palmitoyltransferase small subunit A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SPTSSA, Length 2,777 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPTSSA-201ENST00000298130 LMO7Q8WWI1 1683 aa29■■■□□ 2.23
SPTSSA-201ENST00000298130 TAF5LO75529 589 aa29■■■□□ 2.23
SPTSSA-201ENST00000298130 TRHP20396 242 aaPredicted RBP29■■■□□ 2.23
SPTSSA-201ENST00000298130 DBNDD2Q9BQY9 259 aa29■■■□□ 2.23
SPTSSA-201ENST00000298130 UTYO14607 1347 aa29■■■□□ 2.23
SPTSSA-201ENST00000298130 HIP1O00291 1037 aa28.99■■■□□ 2.23
SPTSSA-201ENST00000298130 CEBPZQ03701 1054 aaKnown RBP28.99■■■□□ 2.23
SPTSSA-201ENST00000298130 RNF20Q5VTR2 975 aa28.99■■■□□ 2.23
SPTSSA-201ENST00000298130 LUZP1Q86V48 1076 aa28.99■■■□□ 2.23
SPTSSA-201ENST00000298130 DACT1Q9NYF0 836 aa28.99■■■□□ 2.23
SPTSSA-201ENST00000298130 TERF1P54274 439 aa28.99■■■□□ 2.23
SPTSSA-201ENST00000298130 ANKRD13DQ6ZTN6 518 aa28.99■■■□□ 2.23
SPTSSA-201ENST00000298130 SLC52A2Q9HAB3 445 aa28.99■■■□□ 2.23
SPTSSA-201ENST00000298130 USP54Q70EL1 1684 aa28.99■■■□□ 2.23
SPTSSA-201ENST00000298130 CHRNA2Q15822 529 aa28.98■■■□□ 2.23
SPTSSA-201ENST00000298130 METTL22Q9BUU2 404 aaPredicted RBP28.98■■■□□ 2.23
SPTSSA-201ENST00000298130 ADGRL3Q9HAR2 1447 aa28.98■■■□□ 2.23
SPTSSA-201ENST00000298130 ERBB3P21860 1342 aa28.98■■■□□ 2.23
SPTSSA-201ENST00000298130 HSP90B1P14625 803 aaKnown RBP28.97■■■□□ 2.23
SPTSSA-201ENST00000298130 PIBF1Q8WXW3 757 aa28.97■■■□□ 2.23
SPTSSA-201ENST00000298130 CSB-PGBD3P0DP91 1061 aa28.97■■■□□ 2.23
SPTSSA-201ENST00000298130 PTPN12Q05209 780 aaKnown RBP28.97■■■□□ 2.23
SPTSSA-201ENST00000298130 MED23Q9ULK4 1368 aa28.97■■■□□ 2.23
SPTSSA-201ENST00000298130 TNNI3KQ59H18 835 aa28.96■■■□□ 2.23
SPTSSA-201ENST00000298130 SPATA32Q96LK8 384 aa28.96■■■□□ 2.23
SPTSSA-201ENST00000298130 PYCARDQ9ULZ3 195 aa28.96■■■□□ 2.23
SPTSSA-201ENST00000298130 FPGT-TNNI3KV9GXZ4 949 aa28.96■■■□□ 2.23
SPTSSA-201ENST00000298130 GOLGA6L4A6NEF3 574 aa28.96■■■□□ 2.23
SPTSSA-201ENST00000298130 NUP62CLQ9H1M0 184 aa28.96■■■□□ 2.23
SPTSSA-201ENST00000298130 NPHP3Q7Z494 1330 aa28.96■■■□□ 2.23
SPTSSA-201ENST00000298130 KCNF1Q9H3M0 494 aa28.96■■■□□ 2.23
SPTSSA-201ENST00000298130 CCDC192P0DO97 292 aa28.95■■■□□ 2.23
SPTSSA-201ENST00000298130 A0A0G2JLW4 131 aa28.95■■■□□ 2.22
SPTSSA-201ENST00000298130 Q6ZUG5 572 aa28.95■■■□□ 2.22
SPTSSA-201ENST00000298130 A0A087WZG4 1122 aa28.94■■■□□ 2.22
SPTSSA-201ENST00000298130 NCAPD2Q15021 1401 aa28.94■■■□□ 2.22
SPTSSA-201ENST00000298130 PHKG2P15735 406 aa28.94■■■□□ 2.22
SPTSSA-201ENST00000298130 KDM6AO15550 1401 aaPredicted RBP28.93■■■□□ 2.22
SPTSSA-201ENST00000298130 MAP3K11Q16584 847 aa28.93■■■□□ 2.22
SPTSSA-201ENST00000298130 MRVI1Q9Y6F6 885 aa28.93■■■□□ 2.22
SPTSSA-201ENST00000298130 RFX5P48382 616 aaPredicted RBP28.93■■■□□ 2.22
SPTSSA-201ENST00000298130 TYRO3Q06418 890 aa28.93■■■□□ 2.22
SPTSSA-201ENST00000298130 CYP21A2P08686 494 aa28.92■■■□□ 2.22
SPTSSA-201ENST00000298130 BRF1Q92994 677 aa28.92■■■□□ 2.22
SPTSSA-201ENST00000298130 NEUROD6Q96NK8 337 aa28.92■■■□□ 2.22
SPTSSA-201ENST00000298130 NEK1Q96PY6 1258 aa28.92■■■□□ 2.22
SPTSSA-201ENST00000298130 TTC5Q8N0Z6 440 aa28.92■■■□□ 2.22
SPTSSA-201ENST00000298130 LEO1Q8WVC0 666 aaPredicted RBP28.92■■■□□ 2.22
SPTSSA-201ENST00000298130 TNMDQ9H2S6 317 aa28.92■■■□□ 2.22
SPTSSA-201ENST00000298130 NAP1L2Q9ULW6 460 aaPredicted RBP28.92■■■□□ 2.22
SPTSSA-201ENST00000298130 NR1I2O75469 434 aa28.91■■■□□ 2.22
SPTSSA-201ENST00000298130 FGD1P98174 961 aa28.91■■■□□ 2.22
SPTSSA-201ENST00000298130 FTOQ9C0B1 505 aaKnown RBP eCLIP28.91■■■□□ 2.22
SPTSSA-201ENST00000298130 ZMYND15Q9H091 742 aa28.91■■■□□ 2.22
SPTSSA-201ENST00000298130 ANO6Q4KMQ2 910 aa28.91■■■□□ 2.22
SPTSSA-201ENST00000298130 PROSER2Q86WR7 435 aaPredicted RBP28.91■■■□□ 2.22
SPTSSA-201ENST00000298130 BICD2Q8TD16 824 aa28.91■■■□□ 2.22
SPTSSA-201ENST00000298130 ANKRD1Q15327 319 aa28.9■■■□□ 2.22
SPTSSA-201ENST00000298130 PGBD1Q96JS3 809 aa28.9■■■□□ 2.22
SPTSSA-201ENST00000298130 CHD2O14647 1828 aaKnown RBP28.9■■■□□ 2.22
SPTSSA-201ENST00000298130 TATP17735 454 aaPredicted RBP28.9■■■□□ 2.22
SPTSSA-201ENST00000298130 PDCP20941 246 aa28.9■■■□□ 2.22
SPTSSA-201ENST00000298130 LMBR1LQ6UX01 489 aa28.9■■■□□ 2.22
SPTSSA-201ENST00000298130 SNRKQ9NRH2 765 aa28.9■■■□□ 2.22
SPTSSA-201ENST00000298130 ZNF609O15014 1411 aa28.9■■■□□ 2.22
SPTSSA-201ENST00000298130 CHST3Q7LGC8 479 aa28.9■■■□□ 2.22
SPTSSA-201ENST00000298130 A0A087WWV3 80 aa28.89■■■□□ 2.22
SPTSSA-201ENST00000298130 COPRSQ9NQ92 184 aa28.89■■■□□ 2.22
SPTSSA-201ENST00000298130 DYNC1I1O14576 645 aa28.89■■■□□ 2.21
SPTSSA-201ENST00000298130 ATP5JP18859 108 aa28.89■■■□□ 2.21
SPTSSA-201ENST00000298130 TIMM10P62072 90 aa28.89■■■□□ 2.21
SPTSSA-201ENST00000298130 STOX1Q6ZVD7 989 aa28.89■■■□□ 2.21
SPTSSA-201ENST00000298130 PTGS1P23219 599 aa28.88■■■□□ 2.21
SPTSSA-201ENST00000298130 LRP10Q7Z4F1 713 aa28.88■■■□□ 2.21
SPTSSA-201ENST00000298130 CYP27B1O15528 508 aa28.88■■■□□ 2.21
SPTSSA-201ENST00000298130 H3BQV1 296 aa28.87■■■□□ 2.21
SPTSSA-201ENST00000298130 IFFO2Q5TF58 517 aa28.87■■■□□ 2.21
SPTSSA-201ENST00000298130 GTF3C6Q969F1 213 aa28.87■■■□□ 2.21
SPTSSA-201ENST00000298130 NRBP1Q9UHY1 535 aa28.87■■■□□ 2.21
SPTSSA-201ENST00000298130 GOLIM4O00461 696 aa28.87■■■□□ 2.21
SPTSSA-201ENST00000298130 CCT2P78371 535 aaKnown RBP28.87■■■□□ 2.21
SPTSSA-201ENST00000298130 FAM200AQ8TCP9 573 aa28.87■■■□□ 2.21
SPTSSA-201ENST00000298130 SNRPA1P09661 255 aaKnown RBP28.86■■■□□ 2.21
SPTSSA-201ENST00000298130 CBX8Q9HC52 389 aa28.86■■■□□ 2.21
SPTSSA-201ENST00000298130 RGPD5Q99666 1765 aa28.86■■■□□ 2.21
SPTSSA-201ENST00000298130 SCRN1Q12765 414 aa28.86■■■□□ 2.21
SPTSSA-201ENST00000298130 GUCY1B3Q02153 619 aa28.85■■■□□ 2.21
SPTSSA-201ENST00000298130 HMG20BQ9P0W2 317 aa28.85■■■□□ 2.21
SPTSSA-201ENST00000298130 LRMPQ12912 555 aa28.85■■■□□ 2.21
SPTSSA-201ENST00000298130 ZNF594Q96JF6 807 aaPredicted RBP28.85■■■□□ 2.21
SPTSSA-201ENST00000298130 DNAJC25Q9H1X3 360 aa28.85■■■□□ 2.21
SPTSSA-201ENST00000298130 DRC7Q8IY82 874 aa28.84■■■□□ 2.21
SPTSSA-201ENST00000298130 SCAND2PQ9GZW5 306 aaPredicted RBP28.84■■■□□ 2.21
SPTSSA-201ENST00000298130 NCOA5Q9HCD5 579 aaKnown RBP28.84■■■□□ 2.21
SPTSSA-201ENST00000298130 IFNL2Q8IZJ0 200 aa28.84■■■□□ 2.21
SPTSSA-201ENST00000298130 MYRIPQ8NFW9 859 aa28.84■■■□□ 2.21
SPTSSA-201ENST00000298130 MEGF6O75095 1541 aa28.84■■■□□ 2.21
SPTSSA-201ENST00000298130 APOBRQ0VD83 1088 aa28.84■■■□□ 2.21
SPTSSA-201ENST00000298130 MCMDC2Q4G0Z9 681 aa28.84■■■□□ 2.21
SPTSSA-201ENST00000298130 USPL1Q5W0Q7 1092 aa28.83■■■□□ 2.21
Retrieved 100 of 20,778 RNA–protein pairs in 23.5 ms