RNA–Protein interactions for RNA: ENST00000296581.10

LSM6-201, Transcript of LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LSM6, Length 2,259 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM6-201ENST00000296581 CCDC57Q2TAC2 916 aa18.99■□□□□ 0.63
LSM6-201ENST00000296581 TNNI3KQ59H18 835 aa18.99■□□□□ 0.63
LSM6-201ENST00000296581 CCDC8Q9H0W5 538 aaPredicted RBP18.99■□□□□ 0.63
LSM6-201ENST00000296581 FPGT-TNNI3KV9GXZ4 949 aa18.99■□□□□ 0.63
LSM6-201ENST00000296581 C4BP0C0L5 1744 aa18.98■□□□□ 0.63
LSM6-201ENST00000296581 PDE8AO60658 829 aa18.98■□□□□ 0.63
LSM6-201ENST00000296581 TTLL11Q8NHH1 800 aa18.98■□□□□ 0.63
LSM6-201ENST00000296581 RILPL2Q969X0 211 aa18.98■□□□□ 0.63
LSM6-201ENST00000296581 GPR108Q9NPR9 543 aa18.98■□□□□ 0.63
LSM6-201ENST00000296581 ZNF594Q96JF6 807 aaPredicted RBP18.98■□□□□ 0.63
LSM6-201ENST00000296581 UTP14AQ9BVJ6 771 aaKnown RBP18.98■□□□□ 0.63
LSM6-201ENST00000296581 TLR7Q9NYK1 1049 aaKnown RBP18.98■□□□□ 0.63
LSM6-201ENST00000296581 SH3TC1Q8TE82 1336 aa18.97■□□□□ 0.63
LSM6-201ENST00000296581 CHMLP26374 656 aa18.97■□□□□ 0.63
LSM6-201ENST00000296581 DDX60Q8IY21 1712 aaKnown RBP18.97■□□□□ 0.63
LSM6-201ENST00000296581 CNTROBQ8N137 903 aa18.97■□□□□ 0.63
LSM6-201ENST00000296581 NIP7Q9Y221 180 aaKnown RBP eCLIP18.97■□□□□ 0.63
LSM6-201ENST00000296581 NTSR2O95665 410 aa18.96■□□□□ 0.63
LSM6-201ENST00000296581 IFIT5Q13325 482 aaKnown RBP18.96■□□□□ 0.63
LSM6-201ENST00000296581 LRRC24Q50LG9 513 aa18.96■□□□□ 0.63
LSM6-201ENST00000296581 NARFQ9UHQ1 456 aa18.96■□□□□ 0.63
LSM6-201ENST00000296581 DBNLQ9UJU6 430 aaKnown RBP18.95■□□□□ 0.62
LSM6-201ENST00000296581 GNPATO15228 680 aa18.95■□□□□ 0.62
LSM6-201ENST00000296581 ESYT1Q9BSJ8 1104 aa18.95■□□□□ 0.62
LSM6-201ENST00000296581 REC8O95072 547 aa18.94■□□□□ 0.62
LSM6-201ENST00000296581 USP26Q9BXU7 913 aa18.94■□□□□ 0.62
LSM6-201ENST00000296581 PUS3Q9BZE2 481 aaKnown RBP18.94■□□□□ 0.62
LSM6-201ENST00000296581 GREM2Q9H772 168 aa18.94■□□□□ 0.62
LSM6-201ENST00000296581 BCL2L12Q9HB09 334 aa18.94■□□□□ 0.62
LSM6-201ENST00000296581 MAP4K4O95819 1239 aaPredicted RBP18.94■□□□□ 0.62
LSM6-201ENST00000296581 CCDC85AQ96PX6 553 aaPredicted RBP18.94■□□□□ 0.62
LSM6-201ENST00000296581 RTCBQ9Y3I0 505 aaKnown RBP18.94■□□□□ 0.62
LSM6-201ENST00000296581 C4AP0C0L4 1744 aa18.93■□□□□ 0.62
LSM6-201ENST00000296581 LRP5O75197 1615 aa18.93■□□□□ 0.62
LSM6-201ENST00000296581 ZNF609O15014 1411 aa18.93■□□□□ 0.62
LSM6-201ENST00000296581 ITGA6P23229 1130 aa18.93■□□□□ 0.62
LSM6-201ENST00000296581 COL24A1Q17RW2 1714 aa18.93■□□□□ 0.62
LSM6-201ENST00000296581 ANKRD18BA2A2Z9 1011 aa18.93■□□□□ 0.62
LSM6-201ENST00000296581 HSP90B1P14625 803 aaKnown RBP18.93■□□□□ 0.62
LSM6-201ENST00000296581 LRRC4BQ9NT99 713 aa18.93■□□□□ 0.62
LSM6-201ENST00000296581 ATP5JP18859 108 aa18.92■□□□□ 0.62
LSM6-201ENST00000296581 TAF7LQ5H9L4 462 aa18.92■□□□□ 0.62
LSM6-201ENST00000296581 EVI5LQ96CN4 794 aa18.92■□□□□ 0.62
LSM6-201ENST00000296581 DBNDD2Q9BQY9 259 aa18.92■□□□□ 0.62
LSM6-201ENST00000296581 SLC27A3Q5K4L6 730 aa18.91■□□□□ 0.62
LSM6-201ENST00000296581 KIF2CQ99661 725 aa18.91■□□□□ 0.62
LSM6-201ENST00000296581 TRIM37O94972 964 aa18.91■□□□□ 0.62
LSM6-201ENST00000296581 USPL1Q5W0Q7 1092 aa18.91■□□□□ 0.62
LSM6-201ENST00000296581 SMIM5Q71RC9 77 aa18.91■□□□□ 0.62
LSM6-201ENST00000296581 AMIGO3Q86WK7 504 aa18.91■□□□□ 0.62
LSM6-201ENST00000296581 CEP126Q9P2H0 1117 aa18.91■□□□□ 0.62
LSM6-201ENST00000296581 RTL9Q8NET4 1388 aa18.91■□□□□ 0.62
LSM6-201ENST00000296581 RIC1Q4ADV7 1423 aa18.9■□□□□ 0.62
LSM6-201ENST00000296581 FAM177BA6PVY3 158 aa18.9■□□□□ 0.62
LSM6-201ENST00000296581 HCLS1P14317 486 aaPredicted RBP18.9■□□□□ 0.62
LSM6-201ENST00000296581 UBR3Q6ZT12 1888 aa18.9■□□□□ 0.62
LSM6-201ENST00000296581 BECN1Q14457 450 aa18.9■□□□□ 0.62
LSM6-201ENST00000296581 ARHGEF1Q92888 912 aaKnown RBP18.9■□□□□ 0.62
LSM6-201ENST00000296581 RIPOR2Q9Y4F9 1068 aa18.9■□□□□ 0.62
LSM6-201ENST00000296581 ZPR1O75312 459 aa18.89■□□□□ 0.61
LSM6-201ENST00000296581 TBC1D9BQ66K14 1250 aa18.89■□□□□ 0.61
LSM6-201ENST00000296581 BOLA2Q9H3K6 86 aa18.89■□□□□ 0.61
LSM6-201ENST00000296581 SRP68Q9UHB9 627 aaKnown RBP18.89■□□□□ 0.61
LSM6-201ENST00000296581 BRPF3Q9ULD4 1205 aa18.89■□□□□ 0.61
LSM6-201ENST00000296581 DAXXQ9UER7 740 aaPredicted RBP18.89■□□□□ 0.61
LSM6-201ENST00000296581 AKAP2Q9Y2D5 859 aa18.89■□□□□ 0.61
LSM6-201ENST00000296581 EPB41L2O43491 1005 aaKnown RBP18.88■□□□□ 0.61
LSM6-201ENST00000296581 LDHAL6AQ6ZMR3 332 aa18.88■□□□□ 0.61
LSM6-201ENST00000296581 CASZ1Q86V15 1759 aa18.88■□□□□ 0.61
LSM6-201ENST00000296581 A0A1B0GUL7 405 aa18.88■□□□□ 0.61
LSM6-201ENST00000296581 ADRA2BP18089 450 aa18.88■□□□□ 0.61
LSM6-201ENST00000296581 SLC4A3P48751 1232 aa18.88■□□□□ 0.61
LSM6-201ENST00000296581 TIMM10P62072 90 aa18.88■□□□□ 0.61
LSM6-201ENST00000296581 SGSM2O43147 1006 aa18.87■□□□□ 0.61
LSM6-201ENST00000296581 RXRBP28702 533 aa18.87■□□□□ 0.61
LSM6-201ENST00000296581 TRAPPC3LQ5T215 181 aa18.87■□□□□ 0.61
LSM6-201ENST00000296581 NEUROD6Q96NK8 337 aa18.87■□□□□ 0.61
LSM6-201ENST00000296581 CCDC152Q4G0S7 254 aa18.86■□□□□ 0.61
LSM6-201ENST00000296581 TBC1D2Q9BYX2 928 aa18.86■□□□□ 0.61
LSM6-201ENST00000296581 IL25Q9H293 177 aa18.86■□□□□ 0.61
LSM6-201ENST00000296581 SLC10A5Q5PT55 438 aa18.86■□□□□ 0.61
LSM6-201ENST00000296581 HAUS7Q99871 368 aa18.86■□□□□ 0.61
LSM6-201ENST00000296581 PODXL2Q9NZ53 605 aa18.86■□□□□ 0.61
LSM6-201ENST00000296581 HIP1O00291 1037 aa18.85■□□□□ 0.61
LSM6-201ENST00000296581 ERFEQ4G0M1 354 aa18.85■□□□□ 0.61
LSM6-201ENST00000296581 VGLL2Q8N8G2 317 aa18.85■□□□□ 0.61
LSM6-201ENST00000296581 NYXQ9GZU5 481 aa18.85■□□□□ 0.61
LSM6-201ENST00000296581 CNNM1Q9NRU3 951 aa18.85■□□□□ 0.61
LSM6-201ENST00000296581 RFX7Q2KHR2 1363 aa18.85■□□□□ 0.61
LSM6-201ENST00000296581 HMGB2P26583 209 aaKnown RBP18.85■□□□□ 0.61
LSM6-201ENST00000296581 RFC4P35249 363 aa18.85■□□□□ 0.61
LSM6-201ENST00000296581 METTL24Q5JXM2 366 aa18.85■□□□□ 0.61
LSM6-201ENST00000296581 SNX21Q969T3 373 aa18.85■□□□□ 0.61
LSM6-201ENST00000296581 SETDB2Q96T68 719 aa18.85■□□□□ 0.61
LSM6-201ENST00000296581 DIAPH3Q9NSV4 1193 aa18.85■□□□□ 0.61
LSM6-201ENST00000296581 BICDL1Q6ZP65 573 aa18.84■□□□□ 0.61
LSM6-201ENST00000296581 PPIL4Q8WUA2 492 aaKnown RBP eCLIP18.84■□□□□ 0.61
LSM6-201ENST00000296581 RUFY2Q8WXA3 655 aa18.84■□□□□ 0.61
LSM6-201ENST00000296581 SPEF2Q9C093 1822 aa18.84■□□□□ 0.61
LSM6-201ENST00000296581 SF3B3Q15393 1217 aaKnown RBP18.84■□□□□ 0.61
Retrieved 100 of 20,778 RNA–protein pairs in 40.5 ms