RNA–Protein interactions for RNA: ENST00000264010.8

CTCF-201, Transcript of CCCTC-binding factor, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CTCF, Length 3,939 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTCF-201ENST00000264010 ATP5JP18859 108 aa19.27■□□□□ 0.68
CTCF-201ENST00000264010 MCMDC2Q4G0Z9 681 aa19.27■□□□□ 0.68
CTCF-201ENST00000264010 RASEFQ8IZ41 740 aa19.27■□□□□ 0.68
CTCF-201ENST00000264010 BRINP3Q76B58 766 aa19.27■□□□□ 0.67
CTCF-201ENST00000264010 ZNF592Q92610 1267 aa19.27■□□□□ 0.67
CTCF-201ENST00000264010 DBNDD2Q9BQY9 259 aa19.27■□□□□ 0.67
CTCF-201ENST00000264010 NECAB1Q8N987 351 aa19.26■□□□□ 0.67
CTCF-201ENST00000264010 NEK1Q96PY6 1258 aa19.26■□□□□ 0.67
CTCF-201ENST00000264010 TAOK2Q9UL54 1235 aa19.26■□□□□ 0.67
CTCF-201ENST00000264010 USP42Q9H9J4 1324 aaKnown RBP19.26■□□□□ 0.67
CTCF-201ENST00000264010 HMGB1P09429 215 aaKnown RBP19.26■□□□□ 0.67
CTCF-201ENST00000264010 TRDNQ13061 729 aa19.26■□□□□ 0.67
CTCF-201ENST00000264010 RALYLQ86SE5 291 aaKnown RBP19.26■□□□□ 0.67
CTCF-201ENST00000264010 CTNNA3Q9UI47 895 aa19.26■□□□□ 0.67
CTCF-201ENST00000264010 SLC27A2O14975 620 aa19.25■□□□□ 0.67
CTCF-201ENST00000264010 BICD2Q8TD16 824 aa19.25■□□□□ 0.67
CTCF-201ENST00000264010 LRSAM1Q6UWE0 723 aa19.25■□□□□ 0.67
CTCF-201ENST00000264010 USP48Q86UV5 1035 aa19.25■□□□□ 0.67
CTCF-201ENST00000264010 CARD10Q9BWT7 1032 aa19.25■□□□□ 0.67
CTCF-201ENST00000264010 SYT1P21579 422 aa19.25■□□□□ 0.67
CTCF-201ENST00000264010 ZNF445P59923 1031 aa19.25■□□□□ 0.67
CTCF-201ENST00000264010 METTL24Q5JXM2 366 aa19.25■□□□□ 0.67
CTCF-201ENST00000264010 DDX24Q9GZR7 859 aaKnown RBP eCLIP19.25■□□□□ 0.67
CTCF-201ENST00000264010 EXOC5O00471 708 aa19.24■□□□□ 0.67
CTCF-201ENST00000264010 TLR7Q9NYK1 1049 aaKnown RBP19.24■□□□□ 0.67
CTCF-201ENST00000264010 F13A1P00488 732 aa19.24■□□□□ 0.67
CTCF-201ENST00000264010 CCDC183Q5T5S1 534 aa19.24■□□□□ 0.67
CTCF-201ENST00000264010 NWD1Q149M9 1564 aa19.24■□□□□ 0.67
CTCF-201ENST00000264010 TTLL7Q6ZT98 887 aa19.24■□□□□ 0.67
CTCF-201ENST00000264010 FERMT3Q86UX7 667 aa19.24■□□□□ 0.67
CTCF-201ENST00000264010 TCEANC2Q96MN5 208 aa19.24■□□□□ 0.67
CTCF-201ENST00000264010 ERICH4A6NGS2 130 aa19.23■□□□□ 0.67
CTCF-201ENST00000264010 CLCN1P35523 988 aa19.23■□□□□ 0.67
CTCF-201ENST00000264010 PDIA6Q15084 440 aa19.23■□□□□ 0.67
CTCF-201ENST00000264010 PAG1Q9NWQ8 432 aa19.23■□□□□ 0.67
CTCF-201ENST00000264010 CHD2O14647 1828 aaKnown RBP19.23■□□□□ 0.67
CTCF-201ENST00000264010 EYA2O00167 538 aa19.23■□□□□ 0.67
CTCF-201ENST00000264010 HEG1Q9ULI3 1381 aa19.23■□□□□ 0.67
CTCF-201ENST00000264010 CPLX1O14810 134 aa19.23■□□□□ 0.67
CTCF-201ENST00000264010 UBE2HP62256 183 aa19.23■□□□□ 0.67
CTCF-201ENST00000264010 GNL2Q13823 731 aaKnown RBP19.23■□□□□ 0.67
CTCF-201ENST00000264010 TBC1D2BQ9UPU7 963 aa19.23■□□□□ 0.67
CTCF-201ENST00000264010 ZSWIM6Q9HCJ5 1215 aa19.22■□□□□ 0.67
CTCF-201ENST00000264010 A0A0D9SFI3 127 aa19.22■□□□□ 0.67
CTCF-201ENST00000264010 GPTP24298 496 aa19.22■□□□□ 0.67
CTCF-201ENST00000264010 EPHA10Q5JZY3 1008 aa19.22■□□□□ 0.67
CTCF-201ENST00000264010 ZSCAN25Q6NSZ9 544 aa19.22■□□□□ 0.67
CTCF-201ENST00000264010 CCDC39Q9UFE4 941 aa19.22■□□□□ 0.67
CTCF-201ENST00000264010 CNPY2Q9Y2B0 182 aa19.22■□□□□ 0.67
CTCF-201ENST00000264010 MST1RQ04912 1400 aa19.22■□□□□ 0.67
CTCF-201ENST00000264010 SPDYE4A6NLX3 237 aa19.22■□□□□ 0.67
CTCF-201ENST00000264010 UTYO14607 1347 aa19.22■□□□□ 0.67
CTCF-201ENST00000264010 GAS2L3Q86XJ1 694 aa19.22■□□□□ 0.67
CTCF-201ENST00000264010 CYP2E1P05181 493 aaPredicted RBP19.21■□□□□ 0.67
CTCF-201ENST00000264010 FOSBP53539 338 aa19.21■□□□□ 0.67
CTCF-201ENST00000264010 DCCP43146 1447 aa19.21■□□□□ 0.67
CTCF-201ENST00000264010 PRIM1P49642 420 aaKnown RBP19.21■□□□□ 0.67
CTCF-201ENST00000264010 CPLX2Q6PUV4 134 aaKnown RBP19.21■□□□□ 0.67
CTCF-201ENST00000264010 MAP4K1Q92918 833 aa19.21■□□□□ 0.67
CTCF-201ENST00000264010 NPHP1O15259 732 aa19.21■□□□□ 0.67
CTCF-201ENST00000264010 TIMM10P62072 90 aa19.21■□□□□ 0.67
CTCF-201ENST00000264010 PTPN12Q05209 780 aaKnown RBP19.21■□□□□ 0.67
CTCF-201ENST00000264010 SF3A1Q15459 793 aaKnown RBP19.21■□□□□ 0.67
CTCF-201ENST00000264010 EDC3Q96F86 508 aaKnown RBP19.21■□□□□ 0.67
CTCF-201ENST00000264010 LTN1O94822 1766 aa19.21■□□□□ 0.67
CTCF-201ENST00000264010 TRMT112Q9UI30 125 aaKnown RBP19.2■□□□□ 0.66
CTCF-201ENST00000264010 DBNLQ9UJU6 430 aaKnown RBP19.2■□□□□ 0.66
CTCF-201ENST00000264010 GTF2E1P29083 439 aaPredicted RBP19.2■□□□□ 0.66
CTCF-201ENST00000264010 BTG4Q9NY30 223 aa19.2■□□□□ 0.66
CTCF-201ENST00000264010 ANKRD18BA2A2Z9 1011 aa19.2■□□□□ 0.66
CTCF-201ENST00000264010 FAM177BA6PVY3 158 aa19.2■□□□□ 0.66
CTCF-201ENST00000264010 RPS6KB1P23443 525 aa19.2■□□□□ 0.66
CTCF-201ENST00000264010 LDHAL6AQ6ZMR3 332 aa19.19■□□□□ 0.66
CTCF-201ENST00000264010 KBTBD3Q8NAB2 608 aa19.19■□□□□ 0.66
CTCF-201ENST00000264010 SPATA32Q96LK8 384 aa19.19■□□□□ 0.66
CTCF-201ENST00000264010 SNRKQ9NRH2 765 aa19.19■□□□□ 0.66
CTCF-201ENST00000264010 SCAND2PQ9GZW5 306 aaPredicted RBP19.19■□□□□ 0.66
CTCF-201ENST00000264010 CACNA1FO60840 1977 aa19.19■□□□□ 0.66
CTCF-201ENST00000264010 IMMTQ16891 758 aaKnown RBP19.19■□□□□ 0.66
CTCF-201ENST00000264010 DDX11Q96FC9 970 aa19.19■□□□□ 0.66
CTCF-201ENST00000264010 GOLGA6L6A8MZA4 724 aa19.19■□□□□ 0.66
CTCF-201ENST00000264010 SLIT3O75094 1523 aa19.18■□□□□ 0.66
CTCF-201ENST00000264010 MTERF4Q7Z6M4 381 aaKnown RBP19.18■□□□□ 0.66
CTCF-201ENST00000264010 DHX16O60231 1041 aaKnown RBP19.18■□□□□ 0.66
CTCF-201ENST00000264010 ADCK5Q3MIX3 580 aa19.18■□□□□ 0.66
CTCF-201ENST00000264010 ZSCAN30Q86W11 494 aa19.18■□□□□ 0.66
CTCF-201ENST00000264010 HAUS7Q99871 368 aa19.18■□□□□ 0.66
CTCF-201ENST00000264010 TCIRG1Q13488 830 aa19.18■□□□□ 0.66
CTCF-201ENST00000264010 DNAJC10Q8IXB1 793 aa19.18■□□□□ 0.66
CTCF-201ENST00000264010 HELLSQ9NRZ9 838 aa19.18■□□□□ 0.66
CTCF-201ENST00000264010 TOMM22Q9NS69 142 aa19.18■□□□□ 0.66
CTCF-201ENST00000264010 ZDHHC9Q9Y397 364 aa19.18■□□□□ 0.66
CTCF-201ENST00000264010 NDUFB9Q9Y6M9 179 aa19.18■□□□□ 0.66
CTCF-201ENST00000264010 A0A1B0GUL7 405 aa19.17■□□□□ 0.66
CTCF-201ENST00000264010 ZNF594Q96JF6 807 aaPredicted RBP19.17■□□□□ 0.66
CTCF-201ENST00000264010 ZFYP08048 801 aaPredicted RBP19.17■□□□□ 0.66
CTCF-201ENST00000264010 GPT2Q8TD30 523 aa19.17■□□□□ 0.66
CTCF-201ENST00000264010 CHAMP1Q96JM3 812 aa19.17■□□□□ 0.66
CTCF-201ENST00000264010 IL25Q9H293 177 aa19.17■□□□□ 0.66
CTCF-201ENST00000264010 KIF1AQ12756 1690 aa19.17■□□□□ 0.66
Retrieved 100 of 20,778 RNA–protein pairs in 34.2 ms