RNA–Protein interactions for RNA: ENST00000216456.6

VTI1B-201, Transcript of vesicle transport through interaction with t-SNAREs 1B, humanhuman

TSL 1 (best)

Gene VTI1B, Length 1,103 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VTI1B-201ENST00000216456 ITGBL1O95965 494 aaPredicted RBP28.64■■■□□ 2.18
VTI1B-201ENST00000216456 EPS15P42566 896 aa28.64■■■□□ 2.18
VTI1B-201ENST00000216456 GRIPAP1Q4V328 841 aa28.64■■■□□ 2.18
VTI1B-201ENST00000216456 ADAMTSL1Q8N6G6 1762 aa28.64■■■□□ 2.18
VTI1B-201ENST00000216456 ZNF316A6NFI3 1004 aaPredicted RBP28.63■■■□□ 2.17
VTI1B-201ENST00000216456 ZEB1P37275 1124 aaPredicted RBP28.63■■■□□ 2.17
VTI1B-201ENST00000216456 GOLGA2Q08379 1002 aa28.63■■■□□ 2.17
VTI1B-201ENST00000216456 MPNDQ8N594 471 aa28.63■■■□□ 2.17
VTI1B-201ENST00000216456 RTFDC1Q9BY42 306 aaPredicted RBP28.63■■■□□ 2.17
VTI1B-201ENST00000216456 MRS2Q9HD23 443 aa28.63■■■□□ 2.17
VTI1B-201ENST00000216456 MKRN1Q9UHC7 482 aaKnown RBP28.63■■■□□ 2.17
VTI1B-201ENST00000216456 IRS4O14654 1257 aaPredicted RBP28.62■■■□□ 2.17
VTI1B-201ENST00000216456 WWC1Q8IX03 1113 aa28.62■■■□□ 2.17
VTI1B-201ENST00000216456 TMX4Q9H1E5 349 aaPredicted RBP28.62■■■□□ 2.17
VTI1B-201ENST00000216456 SALL2Q9Y467 1007 aaPredicted RBP28.62■■■□□ 2.17
VTI1B-201ENST00000216456 TRIM28Q13263 835 aaKnown RBP28.61■■■□□ 2.17
VTI1B-201ENST00000216456 SF3B3Q15393 1217 aaKnown RBP28.61■■■□□ 2.17
VTI1B-201ENST00000216456 IFFO2Q5TF58 517 aa28.61■■■□□ 2.17
VTI1B-201ENST00000216456 DUOX1Q9NRD9 1551 aa28.61■■■□□ 2.17
VTI1B-201ENST00000216456 FMR1Q06787 632 aaKnown RBP eCLIP28.6■■■□□ 2.17
VTI1B-201ENST00000216456 CXCL9Q07325 125 aa28.6■■■□□ 2.17
VTI1B-201ENST00000216456 CREBZFQ9NS37 354 aa28.6■■■□□ 2.17
VTI1B-201ENST00000216456 SEC31BQ9NQW1 1179 aa28.58■■■□□ 2.17
VTI1B-201ENST00000216456 ZNRF3Q9ULT6 936 aa28.58■■■□□ 2.17
VTI1B-201ENST00000216456 RAD17O75943 681 aa28.57■■■□□ 2.16
VTI1B-201ENST00000216456 KIAA2012Q0VF49 1180 aa28.57■■■□□ 2.16
VTI1B-201ENST00000216456 CCDC30Q5VVM6 783 aa28.57■■■□□ 2.16
VTI1B-201ENST00000216456 G2E3Q7L622 706 aa28.57■■■□□ 2.16
VTI1B-201ENST00000216456 PNMA8AQ86V59 439 aaPredicted RBP28.57■■■□□ 2.16
VTI1B-201ENST00000216456 CNTROBQ8N137 903 aa28.57■■■□□ 2.16
VTI1B-201ENST00000216456 ZBTB38Q8NAP3 1195 aaPredicted RBP28.57■■■□□ 2.16
VTI1B-201ENST00000216456 SUPT20HQ8NEM7 779 aa28.57■■■□□ 2.16
VTI1B-201ENST00000216456 GPR101Q96P66 508 aaPredicted RBP28.57■■■□□ 2.16
VTI1B-201ENST00000216456 CCDC85AQ96PX6 553 aaPredicted RBP28.57■■■□□ 2.16
VTI1B-201ENST00000216456 YDJCA8MPS7 323 aa28.56■■■□□ 2.16
VTI1B-201ENST00000216456 LMOD1P29536 600 aaPredicted RBP28.56■■■□□ 2.16
VTI1B-201ENST00000216456 CCDC27Q2M243 656 aa28.56■■■□□ 2.16
VTI1B-201ENST00000216456 MAP3K2Q9Y2U5 619 aa28.56■■■□□ 2.16
VTI1B-201ENST00000216456 ANP32CO43423 234 aa28.55■■■□□ 2.16
VTI1B-201ENST00000216456 GPSM2P81274 684 aa28.55■■■□□ 2.16
VTI1B-201ENST00000216456 METTL22Q9BUU2 404 aaPredicted RBP28.55■■■□□ 2.16
VTI1B-201ENST00000216456 LRRC37AA6NMS7 1700 aa28.55■■■□□ 2.16
VTI1B-201ENST00000216456 SHTN1A0MZ66 631 aa28.54■■■□□ 2.16
VTI1B-201ENST00000216456 COL13A1Q5TAT6 717 aaPredicted RBP28.54■■■□□ 2.16
VTI1B-201ENST00000216456 NSFL1CQ9UNZ2 370 aaKnown RBP28.54■■■□□ 2.16
VTI1B-201ENST00000216456 HSPA1AP0DMV8 641 aaKnown RBP28.53■■■□□ 2.16
VTI1B-201ENST00000216456 HSPA1BP0DMV9 641 aaKnown RBP28.53■■■□□ 2.16
VTI1B-201ENST00000216456 GMPSP49915 693 aaPredicted RBP28.53■■■□□ 2.16
VTI1B-201ENST00000216456 VPS33BQ9H267 617 aa28.53■■■□□ 2.16
VTI1B-201ENST00000216456 POLLQ9UGP5 575 aa28.53■■■□□ 2.16
VTI1B-201ENST00000216456 PI4KAP2A4QPH2 592 aa28.52■■■□□ 2.16
VTI1B-201ENST00000216456 RIMBP2O15034 1052 aa28.52■■■□□ 2.16
VTI1B-201ENST00000216456 IGKV5-2P06315 115 aa28.52■■■□□ 2.16
VTI1B-201ENST00000216456 TWISTNBQ3B726 338 aaPredicted RBP28.52■■■□□ 2.16
VTI1B-201ENST00000216456 PI4KAP1Q8N8J0 262 aa28.52■■■□□ 2.16
VTI1B-201ENST00000216456 CWC25Q9NXE8 425 aaPredicted RBP28.52■■■□□ 2.16
VTI1B-201ENST00000216456 GPRC5DQ9NZD1 345 aa28.52■■■□□ 2.16
VTI1B-201ENST00000216456 TMEM88BA6NKF7 163 aa28.51■■■□□ 2.15
VTI1B-201ENST00000216456 PCCAP05165 728 aaPredicted RBP28.51■■■□□ 2.15
VTI1B-201ENST00000216456 CIAPIN1Q6FI81 312 aa28.51■■■□□ 2.15
VTI1B-201ENST00000216456 CCDC191Q8NCU4 936 aa28.51■■■□□ 2.15
VTI1B-201ENST00000216456 DBNDD1Q9H9R9 158 aa28.51■■■□□ 2.15
VTI1B-201ENST00000216456 TRAF5O00463 557 aa28.5■■■□□ 2.15
VTI1B-201ENST00000216456 RPS8P62241 208 aaKnown RBP28.5■■■□□ 2.15
VTI1B-201ENST00000216456 CNTNAP1P78357 1384 aa28.5■■■□□ 2.15
VTI1B-201ENST00000216456 C6orf229H3BNL8 230 aa28.49■■■□□ 2.15
VTI1B-201ENST00000216456 DDX58O95786 925 aaKnown RBP28.49■■■□□ 2.15
VTI1B-201ENST00000216456 CWF19L2Q2TBE0 894 aaKnown RBP28.49■■■□□ 2.15
VTI1B-201ENST00000216456 KSR2Q6VAB6 950 aa28.49■■■□□ 2.15
VTI1B-201ENST00000216456 TMC4Q7Z404 712 aa28.49■■■□□ 2.15
VTI1B-201ENST00000216456 KCNQ5Q9NR82 932 aa28.49■■■□□ 2.15
VTI1B-201ENST00000216456 FANCIQ9NVI1 1328 aa28.48■■■□□ 2.15
VTI1B-201ENST00000216456 DOK7Q18PE1 504 aa28.48■■■□□ 2.15
VTI1B-201ENST00000216456 WASHC4Q2M389 1173 aa28.48■■■□□ 2.15
VTI1B-201ENST00000216456 SPINK5Q9NQ38 1064 aaPredicted RBP28.48■■■□□ 2.15
VTI1B-201ENST00000216456 ZBTB12Q9Y330 459 aaPredicted RBP28.48■■■□□ 2.15
VTI1B-201ENST00000216456 SLC4A2P04920 1241 aa28.47■■■□□ 2.15
VTI1B-201ENST00000216456 STK31Q9BXU1 1019 aa28.47■■■□□ 2.15
VTI1B-201ENST00000216456 PDE8AO60658 829 aa28.46■■■□□ 2.15
VTI1B-201ENST00000216456 VEGFBP49765 207 aa28.46■■■□□ 2.15
VTI1B-201ENST00000216456 USP50Q70EL3 339 aaPredicted RBP28.46■■■□□ 2.15
VTI1B-201ENST00000216456 TBC1D16Q8TBP0 767 aa28.46■■■□□ 2.15
VTI1B-201ENST00000216456 ADARB2Q9NS39 739 aaKnown RBP28.46■■■□□ 2.15
VTI1B-201ENST00000216456 IL16Q14005 1332 aa28.45■■■□□ 2.15
VTI1B-201ENST00000216456 HIRAP54198 1017 aaPredicted RBP28.45■■■□□ 2.14
VTI1B-201ENST00000216456 TRPM4Q8TD43 1214 aa28.45■■■□□ 2.14
VTI1B-201ENST00000216456 BCL2L13Q9BXK5 485 aa28.45■■■□□ 2.14
VTI1B-201ENST00000216456 PSMD14O00487 310 aa28.44■■■□□ 2.14
VTI1B-201ENST00000216456 FAM9BQ8IZU0 186 aa28.44■■■□□ 2.14
VTI1B-201ENST00000216456 WTIPA6NIX2 430 aaPredicted RBP28.43■■■□□ 2.14
VTI1B-201ENST00000216456 CCDC152Q4G0S7 254 aa28.43■■■□□ 2.14
VTI1B-201ENST00000216456 RTL9Q8NET4 1388 aa28.42■■■□□ 2.14
VTI1B-201ENST00000216456 NEURL1BA8MQ27 555 aa28.42■■■□□ 2.14
VTI1B-201ENST00000216456 EXOSC9Q06265 439 aaKnown RBP28.42■■■□□ 2.14
VTI1B-201ENST00000216456 TNIP1Q15025 636 aa28.42■■■□□ 2.14
VTI1B-201ENST00000216456 ECE2O60344 883 aa28.41■■■□□ 2.14
VTI1B-201ENST00000216456 DLK2Q6UY11 383 aa28.41■■■□□ 2.14
VTI1B-201ENST00000216456 CNOT7Q9UIV1 285 aaKnown RBP28.41■■■□□ 2.14
VTI1B-201ENST00000216456 ABT1Q9ULW3 272 aaKnown RBP28.41■■■□□ 2.14
VTI1B-201ENST00000216456 CDHR2Q9BYE9 1310 aa28.41■■■□□ 2.14
Retrieved 100 of 20,778 RNA–protein pairs in 25.1 ms