RNA–Protein interactions for RNA: ENST00000543140.5

COL4A1-204, Transcript of collagen type IV alpha 1 chain, humanhuman

TSL 1 (best) BASIC

Gene COL4A1, Length 2,547 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1-204ENST00000543140 A0A1B0GX78 115 aa14.92□□□□□ -0.02
COL4A1-204ENST00000543140 FABP12A6NFH5 140 aa14.92□□□□□ -0.02
COL4A1-204ENST00000543140 PPM1BO75688 479 aa14.92□□□□□ -0.02
COL4A1-204ENST00000543140 ACVR1BP36896 505 aa14.92□□□□□ -0.02
COL4A1-204ENST00000543140 ARRB1P49407 418 aaPredicted RBP14.92□□□□□ -0.02
COL4A1-204ENST00000543140 FAM27D1Q5T7N8 215 aa14.92□□□□□ -0.02
COL4A1-204ENST00000543140 HLA-DQA1Q5Y7H0 255 aa14.92□□□□□ -0.02
COL4A1-204ENST00000543140 CCBE1Q6UXH8 406 aaPredicted RBP14.92□□□□□ -0.02
COL4A1-204ENST00000543140 SPATC1Q76KD6 591 aa14.92□□□□□ -0.02
COL4A1-204ENST00000543140 ZNF563Q8TA94 476 aa14.92□□□□□ -0.02
COL4A1-204ENST00000543140 MESP1Q9BRJ9 268 aa14.92□□□□□ -0.02
COL4A1-204ENST00000543140 PPIL3Q9H2H8 161 aaKnown RBP14.92□□□□□ -0.02
COL4A1-204ENST00000543140 CCDC86Q9H6F5 360 aaKnown RBP14.92□□□□□ -0.02
COL4A1-204ENST00000543140 SACM1LQ9NTJ5 587 aa14.92□□□□□ -0.02
COL4A1-204ENST00000543140 GRIP1Q9Y3R0 1128 aa14.92□□□□□ -0.02
COL4A1-204ENST00000543140 NUP210LQ5VU65 1888 aa14.92□□□□□ -0.02
COL4A1-204ENST00000543140 IGHV3-20A0A0C4DH32 117 aa14.91□□□□□ -0.02
COL4A1-204ENST00000543140 KHNYNO15037 678 aaKnown RBP14.91□□□□□ -0.02
COL4A1-204ENST00000543140 IL12BP29460 328 aa14.91□□□□□ -0.02
COL4A1-204ENST00000543140 PYCR1P32322 319 aa14.91□□□□□ -0.02
COL4A1-204ENST00000543140 AQP2P41181 271 aa14.91□□□□□ -0.02
COL4A1-204ENST00000543140 EBPQ15125 230 aaKnown RBP14.91□□□□□ -0.02
COL4A1-204ENST00000543140 TAB1Q15750 504 aa14.91□□□□□ -0.02
COL4A1-204ENST00000543140 ATG4DQ86TL0 474 aaPredicted RBP14.91□□□□□ -0.02
COL4A1-204ENST00000543140 SLITRK4Q8IW52 837 aa14.91□□□□□ -0.02
COL4A1-204ENST00000543140 C17orf47Q8NEP4 570 aa14.91□□□□□ -0.02
COL4A1-204ENST00000543140 OR5J2Q8NH18 312 aa14.91□□□□□ -0.02
COL4A1-204ENST00000543140 AP3S1Q92572 193 aa14.91□□□□□ -0.02
COL4A1-204ENST00000543140 DEPDC7Q96QD5 511 aa14.91□□□□□ -0.02
COL4A1-204ENST00000543140 SRRQ9GZT4 340 aa14.91□□□□□ -0.02
COL4A1-204ENST00000543140 ERVMER34-1Q9H9K5 563 aa14.91□□□□□ -0.02
COL4A1-204ENST00000543140 TBC1D24Q9ULP9 559 aa14.91□□□□□ -0.02
COL4A1-204ENST00000543140 TRAPPC4Q9Y296 219 aa14.91□□□□□ -0.02
COL4A1-204ENST00000543140 HCRTR2O43614 444 aa14.91□□□□□ -0.02
COL4A1-204ENST00000543140 HPGDSO60760 199 aa14.91□□□□□ -0.02
COL4A1-204ENST00000543140 RGS9O75916 674 aaPredicted RBP14.91□□□□□ -0.02
COL4A1-204ENST00000543140 TFP02787 698 aa14.91□□□□□ -0.02
COL4A1-204ENST00000543140 ADH7P40394 386 aa14.91□□□□□ -0.02
COL4A1-204ENST00000543140 BDH1Q02338 343 aa14.91□□□□□ -0.02
COL4A1-204ENST00000543140 TP53I3Q53FA7 332 aa14.91□□□□□ -0.02
COL4A1-204ENST00000543140 WDR74Q6RFH5 385 aaPredicted RBP14.91□□□□□ -0.02
COL4A1-204ENST00000543140 LYPD4Q6UWN0 246 aa14.91□□□□□ -0.02
COL4A1-204ENST00000543140 DPY19L2P2Q6ZN68 376 aa14.91□□□□□ -0.02
COL4A1-204ENST00000543140 MARCH3Q86UD3 253 aa14.91□□□□□ -0.02
COL4A1-204ENST00000543140 CARFQ8N187 725 aa14.91□□□□□ -0.02
COL4A1-204ENST00000543140 HPS1Q92902 700 aa14.91□□□□□ -0.02
COL4A1-204ENST00000543140 RELTQ969Z4 430 aa14.91□□□□□ -0.02
COL4A1-204ENST00000543140 COQ7Q99807 217 aa14.91□□□□□ -0.02
COL4A1-204ENST00000543140 SLC7A5P2Q9GIP4 190 aa14.91□□□□□ -0.02
COL4A1-204ENST00000543140 INPP5EQ9NRR6 644 aa14.91□□□□□ -0.02
COL4A1-204ENST00000543140 HAO2Q9NYQ3 351 aa14.91□□□□□ -0.02
COL4A1-204ENST00000543140 MALT1Q9UDY8 824 aa14.91□□□□□ -0.02
COL4A1-204ENST00000543140 OR6C68A6NDL8 312 aa14.9□□□□□ -0.02
COL4A1-204ENST00000543140 FAM171A2A8MVW0 826 aa14.9□□□□□ -0.02
COL4A1-204ENST00000543140 TMCC2O75069 709 aa14.9□□□□□ -0.02
COL4A1-204ENST00000543140 GRK6P43250 576 aa14.9□□□□□ -0.02
COL4A1-204ENST00000543140 CD97P48960 835 aa14.9□□□□□ -0.02
COL4A1-204ENST00000543140 ZNF117Q03924 483 aa14.9□□□□□ -0.02
COL4A1-204ENST00000543140 GLYR1Q49A26 553 aaPredicted RBP14.9□□□□□ -0.02
COL4A1-204ENST00000543140 ZNF574Q6ZN55 896 aaPredicted RBP14.9□□□□□ -0.02
COL4A1-204ENST00000543140 VASH1Q7L8A9 365 aaPredicted RBP14.9□□□□□ -0.02
COL4A1-204ENST00000543140 PRSS42Q7Z5A4 293 aa14.9□□□□□ -0.02
COL4A1-204ENST00000543140 NPEPL1Q8NDH3 523 aa14.9□□□□□ -0.02
COL4A1-204ENST00000543140 OR6K6Q8NGW6 343 aa14.9□□□□□ -0.02
COL4A1-204ENST00000543140 DAZLQ92904 295 aaKnown RBP14.9□□□□□ -0.02
COL4A1-204ENST00000543140 RNF32Q9H0A6 362 aa14.9□□□□□ -0.02
COL4A1-204ENST00000543140 NANSQ9NR45 359 aa14.9□□□□□ -0.02
COL4A1-204ENST00000543140 MRTO4Q9UKD2 239 aaKnown RBP14.9□□□□□ -0.02
COL4A1-204ENST00000543140 ADAMTS20P59510 1910 aa14.9□□□□□ -0.02
COL4A1-204ENST00000543140 PNMTP11086 282 aa14.9□□□□□ -0.02
COL4A1-204ENST00000543140 ITPKBP27987 946 aa14.9□□□□□ -0.02
COL4A1-204ENST00000543140 TACR3P29371 465 aa14.9□□□□□ -0.02
COL4A1-204ENST00000543140 EGR4Q05215 589 aa14.9□□□□□ -0.02
COL4A1-204ENST00000543140 TOMM34Q15785 309 aaPredicted RBP14.9□□□□□ -0.02
COL4A1-204ENST00000543140 NR2C2APQ86WQ0 139 aa14.9□□□□□ -0.02
COL4A1-204ENST00000543140 ITFG2Q969R8 447 aa14.9□□□□□ -0.02
COL4A1-204ENST00000543140 KTI12Q96EK9 354 aaPredicted RBP14.9□□□□□ -0.02
COL4A1-204ENST00000543140 Q96M85 177 aa14.9□□□□□ -0.02
COL4A1-204ENST00000543140 SMAD5Q99717 465 aaKnown RBP14.9□□□□□ -0.02
COL4A1-204ENST00000543140 ATF6BQ99941 703 aa14.9□□□□□ -0.02
COL4A1-204ENST00000543140 WWTR1Q9GZV5 400 aa14.9□□□□□ -0.02
COL4A1-204ENST00000543140 SYNDIG1Q9H7V2 258 aa14.9□□□□□ -0.02
COL4A1-204ENST00000543140 NRIP3Q9NQ35 241 aa14.9□□□□□ -0.02
COL4A1-204ENST00000543140 SEMA5BQ9P283 1151 aa14.9□□□□□ -0.02
COL4A1-204ENST00000543140 COPS7AQ9UBW8 275 aa14.9□□□□□ -0.02
COL4A1-204ENST00000543140 POLHQ9Y253 713 aa14.9□□□□□ -0.02
COL4A1-204ENST00000543140 TEX13CA0A0J9YWL9 993 aa14.89□□□□□ -0.03
COL4A1-204ENST00000543140 NUDT14O95848 222 aa14.89□□□□□ -0.03
COL4A1-204ENST00000543140 APOA1P02647 267 aa14.89□□□□□ -0.03
COL4A1-204ENST00000543140 F13BP05160 661 aa14.89□□□□□ -0.03
COL4A1-204ENST00000543140 IL7P13232 177 aa14.89□□□□□ -0.03
COL4A1-204ENST00000543140 SHC1P29353 583 aa14.89□□□□□ -0.03
COL4A1-204ENST00000543140 DAB2P98082 770 aa14.89□□□□□ -0.03
COL4A1-204ENST00000543140 PLCXD2Q0VAA5 305 aa14.89□□□□□ -0.03
COL4A1-204ENST00000543140 GPR50Q13585 617 aa14.89□□□□□ -0.03
COL4A1-204ENST00000543140 PON3Q15166 354 aa14.89□□□□□ -0.03
COL4A1-204ENST00000543140 ZNF74Q16587 644 aa14.89□□□□□ -0.03
COL4A1-204ENST00000543140 GUSBP11Q6P575 273 aa14.89□□□□□ -0.03
COL4A1-204ENST00000543140 GPALPP1Q8IXQ4 340 aa14.89□□□□□ -0.03
COL4A1-204ENST00000543140 SLC43A2Q8N370 569 aa14.89□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 46.9 ms