RNA–Protein interactions for RNA: ENST00000543140.5

COL4A1-204, Transcript of collagen type IV alpha 1 chain, humanhuman

TSL 1 (best) BASIC

Gene COL4A1, Length 2,547 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1-204ENST00000543140 NUDT22Q9BRQ3 303 aa14.97□□□□□ -0.01
COL4A1-204ENST00000543140 TTTY10Q9BZA0 68 aa14.97□□□□□ -0.01
COL4A1-204ENST00000543140 SIAEQ9HAT2 523 aa14.97□□□□□ -0.01
COL4A1-204ENST00000543140 CMAHPQ9Y471 501 aa14.97□□□□□ -0.01
COL4A1-204ENST00000543140 UGT2A1Q9Y4X1 527 aa14.97□□□□□ -0.01
COL4A1-204ENST00000543140 ASCC3Q8N3C0 2202 aaKnown RBP14.97□□□□□ -0.01
COL4A1-204ENST00000543140 A0A087WUJ7 227 aa14.97□□□□□ -0.01
COL4A1-204ENST00000543140 TRDV1A0A1B0GX56 115 aa14.97□□□□□ -0.01
COL4A1-204ENST00000543140 A0A1W2PQL4 384 aaPredicted RBP14.97□□□□□ -0.01
COL4A1-204ENST00000543140 SLC22A31A6NKX4 558 aa14.97□□□□□ -0.01
COL4A1-204ENST00000543140 CASKO14936 926 aa14.97□□□□□ -0.01
COL4A1-204ENST00000543140 POLR1CO15160 346 aaPredicted RBP14.97□□□□□ -0.01
COL4A1-204ENST00000543140 NCR1O76036 304 aa14.97□□□□□ -0.01
COL4A1-204ENST00000543140 GIMD1P0DJR0 217 aa14.97□□□□□ -0.01
COL4A1-204ENST00000543140 HIST1H1CP16403 213 aaKnown RBP14.97□□□□□ -0.01
COL4A1-204ENST00000543140 RPL4P36578 427 aaKnown RBP14.97□□□□□ -0.01
COL4A1-204ENST00000543140 GPR143P51810 404 aa14.97□□□□□ -0.01
COL4A1-204ENST00000543140 ZP2Q05996 745 aa14.97□□□□□ -0.01
COL4A1-204ENST00000543140 NSDHLQ15738 373 aa14.97□□□□□ -0.01
COL4A1-204ENST00000543140 CD200R1LQ6Q8B3 271 aa14.97□□□□□ -0.01
COL4A1-204ENST00000543140 MARCH9Q86YJ5 346 aa14.97□□□□□ -0.01
COL4A1-204ENST00000543140 FAM98AQ8NCA5 519 aaKnown RBP14.97□□□□□ -0.01
COL4A1-204ENST00000543140 OR7G1Q8NGA0 311 aa14.97□□□□□ -0.01
COL4A1-204ENST00000543140 UBQLN4Q9NRR5 601 aa14.97□□□□□ -0.01
COL4A1-204ENST00000543140 MUTYHQ9UIF7 546 aa14.97□□□□□ -0.01
COL4A1-204ENST00000543140 IER3IP1Q9Y5U9 82 aa14.97□□□□□ -0.01
COL4A1-204ENST00000543140 IQCMA0A1B0GVH7 501 aa14.96□□□□□ -0.01
COL4A1-204ENST00000543140 GABRPO00591 440 aa14.96□□□□□ -0.01
COL4A1-204ENST00000543140 SNX4O95219 450 aa14.96□□□□□ -0.01
COL4A1-204ENST00000543140 FGF9P31371 208 aaPredicted RBP14.96□□□□□ -0.01
COL4A1-204ENST00000543140 RORAP35398 523 aa14.96□□□□□ -0.01
COL4A1-204ENST00000543140 PPICP45877 212 aa14.96□□□□□ -0.01
COL4A1-204ENST00000543140 HCCSP53701 268 aa14.96□□□□□ -0.01
COL4A1-204ENST00000543140 SHISA6Q6ZSJ9 500 aa14.96□□□□□ -0.01
COL4A1-204ENST00000543140 ARIH2OSQ8N7S6 290 aa14.96□□□□□ -0.01
COL4A1-204ENST00000543140 DNAJA4Q8WW22 397 aaPredicted RBP14.96□□□□□ -0.01
COL4A1-204ENST00000543140 DPYSL5Q9BPU6 564 aa14.96□□□□□ -0.01
COL4A1-204ENST00000543140 KLHDC3Q9BQ90 382 aa14.96□□□□□ -0.01
COL4A1-204ENST00000543140 ADGRL4Q9HBW9 690 aa14.96□□□□□ -0.01
COL4A1-204ENST00000543140 ZNF304Q9HCX3 659 aa14.96□□□□□ -0.01
COL4A1-204ENST00000543140 BABAM2Q9NXR7 383 aa14.96□□□□□ -0.01
COL4A1-204ENST00000543140 V9GYH0 126 aa14.96□□□□□ -0.01
COL4A1-204ENST00000543140 VPS13AQ96RL7 3174 aa14.96□□□□□ -0.01
COL4A1-204ENST00000543140 SHISA3A0PJX4 238 aa14.96□□□□□ -0.02
COL4A1-204ENST00000543140 E9PI62 339 aa14.96□□□□□ -0.02
COL4A1-204ENST00000543140 NDUFB2O95178 105 aa14.96□□□□□ -0.02
COL4A1-204ENST00000543140 UTS2O95399 124 aa14.96□□□□□ -0.02
COL4A1-204ENST00000543140 DDAH2O95865 285 aa14.96□□□□□ -0.02
COL4A1-204ENST00000543140 FBLP22087 321 aaKnown RBP14.96□□□□□ -0.02
COL4A1-204ENST00000543140 SLC2A5P22732 501 aa14.96□□□□□ -0.02
COL4A1-204ENST00000543140 GALNSP34059 522 aa14.96□□□□□ -0.02
COL4A1-204ENST00000543140 D2HGDHQ8N465 521 aa14.96□□□□□ -0.02
COL4A1-204ENST00000543140 CLDN23Q96B33 292 aa14.96□□□□□ -0.02
COL4A1-204ENST00000543140 ZNF524Q96C55 264 aa14.96□□□□□ -0.02
COL4A1-204ENST00000543140 OR1F2PQ96R84 312 aa14.96□□□□□ -0.02
COL4A1-204ENST00000543140 NUDT9Q9BW91 350 aa14.96□□□□□ -0.02
COL4A1-204ENST00000543140 JAM3Q9BX67 310 aa14.96□□□□□ -0.02
COL4A1-204ENST00000543140 MMACHCQ9Y4U1 282 aa14.96□□□□□ -0.02
COL4A1-204ENST00000543140 IGKV3D-11A0A0A0MRZ8 115 aa14.95□□□□□ -0.02
COL4A1-204ENST00000543140 C17orf51A8MQB3 221 aa14.95□□□□□ -0.02
COL4A1-204ENST00000543140 GTPBP1O00178 669 aaKnown RBP14.95□□□□□ -0.02
COL4A1-204ENST00000543140 SCDO00767 359 aa14.95□□□□□ -0.02
COL4A1-204ENST00000543140 DYRK3O43781 588 aa14.95□□□□□ -0.02
COL4A1-204ENST00000543140 SERPINI2O75830 405 aa14.95□□□□□ -0.02
COL4A1-204ENST00000543140 HLA-DPB1P04440 258 aa14.95□□□□□ -0.02
COL4A1-204ENST00000543140 SBK2P0C263 348 aa14.95□□□□□ -0.02
COL4A1-204ENST00000543140 ACSM1Q08AH1 577 aa14.95□□□□□ -0.02
COL4A1-204ENST00000543140 GALEQ14376 348 aa14.95□□□□□ -0.02
COL4A1-204ENST00000543140 ZSWIM7Q19AV6 140 aa14.95□□□□□ -0.02
COL4A1-204ENST00000543140 WDR45BQ5MNZ6 344 aa14.95□□□□□ -0.02
COL4A1-204ENST00000543140 ARHGAP11AQ6P4F7 1023 aa14.95□□□□□ -0.02
COL4A1-204ENST00000543140 NEIL3Q8TAT5 605 aa14.95□□□□□ -0.02
COL4A1-204ENST00000543140 ZNF721Q8TF20 911 aa14.95□□□□□ -0.02
COL4A1-204ENST00000543140 SLC35B4Q969S0 331 aa14.95□□□□□ -0.02
COL4A1-204ENST00000543140 ZMYND19Q96E35 227 aaPredicted RBP14.95□□□□□ -0.02
COL4A1-204ENST00000543140 SLC46A1Q96NT5 459 aa14.95□□□□□ -0.02
COL4A1-204ENST00000543140 CDX2Q99626 313 aaPredicted RBP14.95□□□□□ -0.02
COL4A1-204ENST00000543140 MIXL1Q9H2W2 232 aa14.95□□□□□ -0.02
COL4A1-204ENST00000543140 FGF21Q9NSA1 209 aa14.95□□□□□ -0.02
COL4A1-204ENST00000543140 CHRNA9Q9UGM1 479 aa14.95□□□□□ -0.02
COL4A1-204ENST00000543140 SIT1Q9Y3P8 196 aa14.95□□□□□ -0.02
COL4A1-204ENST00000543140 SLC35F4A4IF30 521 aa14.95□□□□□ -0.02
COL4A1-204ENST00000543140 ELOA3DA6NLF2 546 aaPredicted RBP14.95□□□□□ -0.02
COL4A1-204ENST00000543140 IMPA2O14732 288 aa14.95□□□□□ -0.02
COL4A1-204ENST00000543140 IL33O95760 270 aa14.95□□□□□ -0.02
COL4A1-204ENST00000543140 IFNGP01579 166 aa14.95□□□□□ -0.02
COL4A1-204ENST00000543140 UBL4AP11441 157 aa14.95□□□□□ -0.02
COL4A1-204ENST00000543140 ZNF79Q15937 498 aa14.95□□□□□ -0.02
COL4A1-204ENST00000543140 CARTPTQ16568 116 aa14.95□□□□□ -0.02
COL4A1-204ENST00000543140 ELOA3BQ3SY89 546 aa14.95□□□□□ -0.02
COL4A1-204ENST00000543140 ARHGAP40Q5TG30 622 aa14.95□□□□□ -0.02
COL4A1-204ENST00000543140 FAAH2Q6GMR7 532 aa14.95□□□□□ -0.02
COL4A1-204ENST00000543140 RFLNBQ8N5W9 214 aa14.95□□□□□ -0.02
COL4A1-204ENST00000543140 C10orf53Q8N6V4 93 aa14.95□□□□□ -0.02
COL4A1-204ENST00000543140 ZNF527Q8NB42 609 aa14.95□□□□□ -0.02
COL4A1-204ENST00000543140 ELOA3Q8NG57 546 aa14.95□□□□□ -0.02
COL4A1-204ENST00000543140 SMPDL3BQ92485 455 aa14.95□□□□□ -0.02
COL4A1-204ENST00000543140 LCORQ96JN0 433 aaPredicted RBP14.95□□□□□ -0.02
COL4A1-204ENST00000543140 MED18Q9BUE0 208 aa14.95□□□□□ -0.02
COL4A1-204ENST00000543140 RTN4RQ9BZR6 473 aa14.95□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 47.9 ms