RNA–Protein interactions for RNA: snR53

snR53, Transcript of C/D box small nucleolar RNA (snoRNA), yeast

Gene snR53, Length 91 nt, Biotype snoRNA.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
snR53	snR53	AMA1	P50082	593 aa		0.56	□□□□□ -2.32
snR53	snR53	ADI1	Q03677	179 aa		0.56	□□□□□ -2.32
snR53	snR53	SWM1	Q12379	170 aa		0.56	□□□□□ -2.32
snR53	snR53	MPH1	P40562	993 aa		0.55	□□□□□ -2.32
snR53	snR53	CTR1	P49573	406 aa		0.55	□□□□□ -2.32
snR53	snR53	KAR5	Q04746	504 aa		0.55	□□□□□ -2.32
snR53	snR53	GPI13	Q07830	1017 aa		0.55	□□□□□ -2.32
snR53	snR53	MDM38	Q08179	573 aa		0.55	□□□□□ -2.32
snR53	snR53	MLH3	Q12083	715 aa		0.55	□□□□□ -2.32
snR53	snR53	UBS1	P38290	277 aa		0.54	□□□□□ -2.32
snR53	snR53	ARC40	P38328	384 aa	Known RBP	0.54	□□□□□ -2.32
snR53	snR53	MUP3	P38734	546 aa		0.54	□□□□□ -2.32
snR53	snR53	UBP7	P40453	1071 aa		0.54	□□□□□ -2.32
snR53	snR53	ACF4	P47129	309 aa		0.54	□□□□□ -2.32
snR53	snR53	AAT1	Q01802	451 aa		0.54	□□□□□ -2.32
snR53	snR53	SRT1	Q03175	343 aa		0.54	□□□□□ -2.32
snR53	snR53	DBP5	P20449	482 aa	Known RBP	0.53	□□□□□ -2.32
snR53	snR53	FUN30	P31380	1131 aa		0.53	□□□□□ -2.32
snR53	snR53	PIN4	P34217	668 aa	Known RBP RIP-Chip data	0.53	□□□□□ -2.32	not detected
snR53	snR53	GGA2	P38817	585 aa	Known RBP	0.53	□□□□□ -2.32
snR53	snR53	CCT5	P40413	562 aa	Known RBP	0.53	□□□□□ -2.32
snR53	snR53	HSV2	P50079	448 aa	Predicted RBP	0.53	□□□□□ -2.32
snR53	snR53	SPP382	Q06411	708 aa	Predicted RBP	0.53	□□□□□ -2.32
snR53	snR53	ASK1	P35734	292 aa		0.52	□□□□□ -2.33
snR53	snR53	MCM7	P38132	845 aa		0.52	□□□□□ -2.33
snR53	snR53	BCD1	P38772	366 aa		0.52	□□□□□ -2.33
snR53	snR53	GIC1	P38785	314 aa		0.52	□□□□□ -2.33
snR53	snR53	PNT1	P38969	423 aa		0.52	□□□□□ -2.33
snR53	snR53	ATG1	P53104	897 aa		0.52	□□□□□ -2.33
snR53	snR53	YPL109C	Q02981	657 aa		0.52	□□□□□ -2.33
snR53	snR53	GNT1	Q12096	491 aa		0.52	□□□□□ -2.33
snR53	snR53	ADE5,7	P07244	802 aa	Known RBP	0.51	□□□□□ -2.33
snR53	snR53	TAF13	P11747	167 aa		0.51	□□□□□ -2.33
snR53	snR53	SPC97	P38863	823 aa		0.51	□□□□□ -2.33
snR53	snR53	PIC2	P40035	300 aa		0.51	□□□□□ -2.33
snR53	snR53	ARG2	P40360	574 aa		0.51	□□□□□ -2.33
snR53	snR53	RAI1	P53063	387 aa	Known RBP	0.51	□□□□□ -2.33
snR53	snR53	SFB2	P53953	876 aa		0.51	□□□□□ -2.33
snR53	snR53	SIW14	P53965	281 aa		0.51	□□□□□ -2.33
snR53	snR53	SSL1	Q04673	461 aa	Predicted RBP	0.51	□□□□□ -2.33
snR53	snR53	ASM4	Q05166	528 aa		0.51	□□□□□ -2.33
snR53	snR53	YKL151C	P36059	337 aa		0.5	□□□□□ -2.33
snR53	snR53	PCI8	P40512	444 aa		0.5	□□□□□ -2.33
snR53	snR53	YIR042C	P40586	236 aa		0.5	□□□□□ -2.33
snR53	snR53	YGL260W	P53056	76 aa		0.5	□□□□□ -2.33
snR53	snR53	STE12	P13574	688 aa		0.49	□□□□□ -2.33
snR53	snR53	CCR4	P31384	837 aa	Known RBP	0.49	□□□□□ -2.33
snR53	snR53	HIR1	P32479	840 aa		0.49	□□□□□ -2.33
snR53	snR53	HOT13	P36078	116 aa		0.49	□□□□□ -2.33
snR53	snR53	SDP1	P40479	209 aa		0.49	□□□□□ -2.33
snR53	snR53	YAP1802	P53309	568 aa		0.49	□□□□□ -2.33
snR53	snR53	HRQ1	Q05549	1077 aa		0.49	□□□□□ -2.33
snR53	snR53	ORM2	Q06144	216 aa		0.49	□□□□□ -2.33
snR53	snR53	YLL058W	Q12198	575 aa		0.49	□□□□□ -2.33
snR53	snR53	SAT4	P25333	603 aa	Known RBP	0.48	□□□□□ -2.33
snR53	snR53	YMC1	P32331	307 aa		0.48	□□□□□ -2.33
snR53	snR53	PCA1	P38360	1216 aa		0.48	□□□□□ -2.33
snR53	snR53	HXT13	P39924	564 aa		0.48	□□□□□ -2.33
snR53	snR53	NPP2	P39997	493 aa		0.48	□□□□□ -2.33
snR53	snR53	MNT3	P40549	630 aa		0.48	□□□□□ -2.33
snR53	snR53	HXT16	P47185	567 aa		0.48	□□□□□ -2.33
snR53	snR53	UBC11	P52492	156 aa		0.48	□□□□□ -2.33
snR53	snR53	HXT17	P53631	564 aa		0.48	□□□□□ -2.33
snR53	snR53	HXT15	P54854	567 aa		0.48	□□□□□ -2.33
snR53	snR53	TOS4	Q06266	489 aa		0.48	□□□□□ -2.33
snR53	snR53	YPR196W	Q06595	470 aa		0.48	□□□□□ -2.33
snR53	snR53	BUD7	Q08754	746 aa		0.48	□□□□□ -2.33
snR53	snR53	LEU3	P08638	886 aa		0.47	□□□□□ -2.33
snR53	snR53	LAT1	P12695	482 aa	Known RBP	0.47	□□□□□ -2.33
snR53	snR53	PRP4	P20053	465 aa	Known RBP	0.47	□□□□□ -2.33
snR53	snR53	AZF1	P41696	914 aa		0.47	□□□□□ -2.33
snR53	snR53	MPH2	P0CD99	609 aa		0.46	□□□□□ -2.34
snR53	snR53	JHD1	P40034	492 aa		0.46	□□□□□ -2.34
snR53	snR53	ENT3	P47160	408 aa		0.46	□□□□□ -2.34
snR53	snR53	BSC6	Q08280	497 aa		0.46	□□□□□ -2.34
snR53	snR53	FRT1	Q99332	602 aa		0.46	□□□□□ -2.34
snR53	snR53	PYC1	P11154	1178 aa	Known RBP	0.45	□□□□□ -2.34
snR53	snR53	SEC8	P32855	1065 aa		0.45	□□□□□ -2.34
snR53	snR53	UGP1	P32861	499 aa	Known RBP	0.45	□□□□□ -2.34
snR53	snR53	BEM3	P32873	1128 aa		0.45	□□□□□ -2.34
snR53	snR53	SAP190	P36123	1033 aa		0.45	□□□□□ -2.34
snR53	snR53	REV7	P38927	245 aa		0.45	□□□□□ -2.34
snR53	snR53	HOS4	P40480	1083 aa		0.45	□□□□□ -2.34
snR53	snR53	VHR1	P40522	640 aa		0.45	□□□□□ -2.34
snR53	snR53	FRE7	Q12333	620 aa		0.45	□□□□□ -2.34
snR53	snR53	FBP1	P09201	348 aa		0.44	□□□□□ -2.34
snR53	snR53	RPC82	P32349	654 aa		0.44	□□□□□ -2.34
snR53	snR53	FLO5	P38894	1075 aa		0.44	□□□□□ -2.34
snR53	snR53	FAA3	P39002	694 aa		0.44	□□□□□ -2.34
snR53	snR53	SAH1	P39954	449 aa	Known RBP	0.44	□□□□□ -2.34
snR53	snR53	ERG13	P54839	491 aa	Known RBP	0.44	□□□□□ -2.34
snR53	snR53	PKH1	Q03407	766 aa		0.44	□□□□□ -2.34
snR53	snR53	TIF35	Q04067	274 aa	Known RBP	0.44	□□□□□ -2.34
snR53	snR53	NOT3	P06102	836 aa	Known RBP	0.43	□□□□□ -2.34
snR53	snR53	CLN2	P20438	545 aa		0.43	□□□□□ -2.34
snR53	snR53	RPD3	P32561	433 aa		0.43	□□□□□ -2.34
snR53	snR53	VPS35	P34110	944 aa		0.43	□□□□□ -2.34
snR53	snR53	CTF8	P38877	133 aa		0.43	□□□□□ -2.34
snR53	snR53	YIL108W	P40483	696 aa	Known RBP	0.43	□□□□□ -2.34
snR53	snR53	ATG4	P53867	494 aa		0.43	□□□□□ -2.34

Retrieved 100 of 5,963 RNA–protein pairs in 40.5 ms