RNA–Protein interactions for RNA: snR47

snR47, Transcript of C/D box small nucleolar RNA (snoRNA), yeast

Gene snR47, Length 99 nt, Biotype snoRNA.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
snR47	snR47	UBS1	P38290	277 aa		0.87	□□□□□ -2.27
snR47	snR47	BDH2	P39713	417 aa		0.87	□□□□□ -2.27
snR47	snR47	FMP52	P40008	231 aa		0.87	□□□□□ -2.27
snR47	snR47	GNP1	P48813	663 aa		0.87	□□□□□ -2.27
snR47	snR47	AMA1	P50082	593 aa		0.87	□□□□□ -2.27
snR47	snR47	LSC1	P53598	329 aa	Known RBP	0.87	□□□□□ -2.27
snR47	snR47	TOS4	Q06266	489 aa		0.87	□□□□□ -2.27
snR47	snR47	IRC13	Q08630	104 aa		0.87	□□□□□ -2.27
snR47	snR47	TRL1	P09880	827 aa	Known RBP	0.86	□□□□□ -2.27
snR47	snR47	NDC80	P40460	691 aa		0.86	□□□□□ -2.27
snR47	snR47	NUP53	Q03790	475 aa		0.86	□□□□□ -2.27
snR47	snR47	MLH3	Q12083	715 aa		0.86	□□□□□ -2.27
snR47	snR47	FRT1	Q99332	602 aa		0.86	□□□□□ -2.27
snR47	snR47	GGA2	P38817	585 aa	Known RBP	0.85	□□□□□ -2.27
snR47	snR47	DUN1	P39009	513 aa		0.85	□□□□□ -2.27
snR47	snR47	NPP2	P39997	493 aa		0.85	□□□□□ -2.27
snR47	snR47	YAT2	P40017	923 aa		0.85	□□□□□ -2.27
snR47	snR47	SDP1	P40479	209 aa		0.85	□□□□□ -2.27
snR47	snR47	HRQ1	Q05549	1077 aa		0.85	□□□□□ -2.27
snR47	snR47	PHO2	P07269	559 aa		0.84	□□□□□ -2.27
snR47	snR47	SSA4	P22202	642 aa	Known RBP	0.84	□□□□□ -2.27
snR47	snR47	SEC8	P32855	1065 aa		0.84	□□□□□ -2.27
snR47	snR47	GLG1	P36143	616 aa		0.84	□□□□□ -2.27
snR47	snR47	MUP3	P38734	546 aa		0.84	□□□□□ -2.27
snR47	snR47	RPP1	P38786	293 aa		0.84	□□□□□ -2.27
snR47	snR47	CCT5	P40413	562 aa	Known RBP	0.84	□□□□□ -2.27
snR47	snR47	RAI1	P53063	387 aa	Known RBP	0.84	□□□□□ -2.27
snR47	snR47	YAP1802	P53309	568 aa		0.84	□□□□□ -2.27
snR47	snR47	HXK1	P04806	485 aa	Known RBP	0.83	□□□□□ -2.28
snR47	snR47	PHO4	P07270	312 aa	Known RBP	0.83	□□□□□ -2.28
snR47	snR47	PRP4	P20053	465 aa	Known RBP	0.83	□□□□□ -2.28
snR47	snR47	EUG1	P32474	517 aa		0.83	□□□□□ -2.28
snR47	snR47	GCD6	P32501	712 aa	Known RBP	0.83	□□□□□ -2.28
snR47	snR47	CTF8	P38877	133 aa		0.83	□□□□□ -2.28
snR47	snR47	YIR042C	P40586	236 aa		0.83	□□□□□ -2.28
snR47	snR47	HSV2	P50079	448 aa	Predicted RBP	0.83	□□□□□ -2.28
snR47	snR47	UBC9	P50623	157 aa	Predicted RBP	0.83	□□□□□ -2.28
snR47	snR47	TIF35	Q04067	274 aa	Known RBP	0.83	□□□□□ -2.28
snR47	snR47	NUT2	Q06213	157 aa		0.83	□□□□□ -2.28
snR47	snR47	SWM1	Q12379	170 aa		0.83	□□□□□ -2.28
snR47	snR47	SIR3	P06701	978 aa		0.82	□□□□□ -2.28
snR47	snR47	LAT1	P12695	482 aa	Known RBP	0.82	□□□□□ -2.28
snR47	snR47	HIR1	P32479	840 aa		0.82	□□□□□ -2.28
snR47	snR47	BCD1	P38772	366 aa		0.82	□□□□□ -2.28
snR47	snR47	FAA3	P39002	694 aa		0.82	□□□□□ -2.28
snR47	snR47	ARG2	P40360	574 aa		0.82	□□□□□ -2.28
snR47	snR47	UBC11	P52492	156 aa		0.82	□□□□□ -2.28
snR47	snR47	SFB2	P53953	876 aa		0.82	□□□□□ -2.28
snR47	snR47	ASM4	Q05166	528 aa		0.82	□□□□□ -2.28
snR47	snR47	SPP382	Q06411	708 aa	Predicted RBP	0.82	□□□□□ -2.28
snR47	snR47	LSB5	P25369	354 aa		0.81	□□□□□ -2.28
snR47	snR47	ASK1	P35734	292 aa		0.81	□□□□□ -2.28
snR47	snR47	SPC97	P38863	823 aa		0.81	□□□□□ -2.28
snR47	snR47	FAA2	P39518	744 aa		0.81	□□□□□ -2.28
snR47	snR47	HOS4	P40480	1083 aa		0.81	□□□□□ -2.28
snR47	snR47	MDJ2	P42834	146 aa		0.81	□□□□□ -2.28
snR47	snR47	SCW4	P53334	386 aa	Known RBP	0.81	□□□□□ -2.28
snR47	snR47	HFD1	Q04458	532 aa		0.81	□□□□□ -2.28
snR47	snR47	SSL1	Q04673	461 aa	Predicted RBP	0.81	□□□□□ -2.28
snR47	snR47	HIS7	P33734	552 aa	Known RBP	0.8	□□□□□ -2.28
snR47	snR47	SAP190	P36123	1033 aa		0.8	□□□□□ -2.28
snR47	snR47	MCM7	P38132	845 aa		0.8	□□□□□ -2.28
snR47	snR47	TAX4	P47030	604 aa		0.8	□□□□□ -2.28
snR47	snR47	CTR1	P49573	406 aa		0.8	□□□□□ -2.28
snR47	snR47	FMP30	Q02883	468 aa		0.8	□□□□□ -2.28
snR47	snR47	SMA2	Q04658	369 aa		0.8	□□□□□ -2.28
snR47	snR47	MPH2	P0CD99	609 aa		0.79	□□□□□ -2.28
snR47	snR47	SPC29	P33419	253 aa		0.79	□□□□□ -2.28
snR47	snR47	YBR139W	P38109	508 aa		0.79	□□□□□ -2.28
snR47	snR47	TSL1	P38427	1098 aa	Known RBP	0.79	□□□□□ -2.28
snR47	snR47	PCI8	P40512	444 aa		0.79	□□□□□ -2.28
snR47	snR47	PYC1	P11154	1178 aa	Known RBP	0.78	□□□□□ -2.28
snR47	snR47	PRE9	P23638	258 aa	Known RBP	0.78	□□□□□ -2.28
snR47	snR47	STE13	P33894	931 aa		0.78	□□□□□ -2.28
snR47	snR47	RER2	P35196	286 aa		0.78	□□□□□ -2.28
snR47	snR47	HOT13	P36078	116 aa		0.78	□□□□□ -2.28
snR47	snR47	ARC40	P38328	384 aa	Known RBP	0.78	□□□□□ -2.28
snR47	snR47	YBR238C	P38330	731 aa	Known RBP	0.78	□□□□□ -2.28
snR47	snR47	BAP3	P41815	604 aa		0.78	□□□□□ -2.28
snR47	snR47	YKE2	P52553	114 aa		0.78	□□□□□ -2.28
snR47	snR47	ASI2	P53895	289 aa		0.78	□□□□□ -2.28
snR47	snR47	OXR1	Q08952	273 aa		0.78	□□□□□ -2.28
snR47	snR47	ATG11	Q12527	1178 aa		0.78	□□□□□ -2.28
snR47	snR47	ADE5,7	P07244	802 aa	Known RBP	0.77	□□□□□ -2.29
snR47	snR47	SAT4	P25333	603 aa	Known RBP	0.77	□□□□□ -2.29
snR47	snR47	GRS1	P38088	690 aa	Known RBP	0.77	□□□□□ -2.29
snR47	snR47	GYP7	P48365	746 aa		0.77	□□□□□ -2.29
snR47	snR47	ATG4	P53867	494 aa		0.77	□□□□□ -2.29
snR47	snR47	AAT1	Q01802	451 aa		0.77	□□□□□ -2.29
snR47	snR47	MCD1	Q12158	566 aa		0.77	□□□□□ -2.29
snR47	snR47	NOT3	P06102	836 aa	Known RBP	0.76	□□□□□ -2.29
snR47	snR47	RPA135	P22138	1203 aa	Known RBP	0.76	□□□□□ -2.29
snR47	snR47	CCR4	P31384	837 aa	Known RBP	0.76	□□□□□ -2.29
snR47	snR47	YMC1	P32331	307 aa		0.76	□□□□□ -2.29
snR47	snR47	UGP1	P32861	499 aa	Known RBP	0.76	□□□□□ -2.29
snR47	snR47	YKR078W	P36158	585 aa	Known RBP	0.76	□□□□□ -2.29
snR47	snR47	YIL169C	P40442	995 aa		0.76	□□□□□ -2.29
snR47	snR47	MNT3	P40549	630 aa		0.76	□□□□□ -2.29
snR47	snR47	MRL1	Q06815	381 aa		0.76	□□□□□ -2.29
snR47	snR47	CDC12	P32468	407 aa	Known RBP	0.75	□□□□□ -2.29

Retrieved 100 of 5,963 RNA–protein pairs in 45.1 ms