RNA–Protein interactions for RNA: YKL012W

PRP40, Transcript of U1 snRNP protein involved in splicing, yeastyeast

Gene PRP40, Length 1,752 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
PRP40YKL012W YGR035CP53222 116 aa6.92□□□□□ -1.3
PRP40YKL012W CEF1Q03654 590 aaPredicted RBP6.92□□□□□ -1.3
PRP40YKL012W YDR338CQ05497 695 aa6.92□□□□□ -1.3
PRP40YKL012W SVS1Q12254 260 aa6.92□□□□□ -1.3
PRP40YKL012W FUI1P38196 639 aa6.92□□□□□ -1.3
PRP40YKL012W DOT6P40059 670 aaKnown RBP6.92□□□□□ -1.3
PRP40YKL012W SDH1Q00711 640 aa6.92□□□□□ -1.3
PRP40YKL012W VMS1Q04311 632 aaKnown RBP6.92□□□□□ -1.3
PRP40YKL012W YOR059CQ08448 450 aaKnown RBP6.92□□□□□ -1.3
PRP40YKL012W AI1P03875 834 aa6.91□□□□□ -1.3
PRP40YKL012W MIH1P23748 554 aa6.91□□□□□ -1.3
PRP40YKL012W CCR4P31384 837 aaKnown RBP6.91□□□□□ -1.3
PRP40YKL012W ECM21P38167 1117 aaKnown RBP6.91□□□□□ -1.3
PRP40YKL012W YAP1801P38856 637 aa6.91□□□□□ -1.3
PRP40YKL012W GPP2P40106 250 aaKnown RBP6.91□□□□□ -1.3
PRP40YKL012W CCT5P40413 562 aaKnown RBP6.91□□□□□ -1.3
PRP40YKL012W RLP7P40693 322 aaKnown RBP6.91□□□□□ -1.3
PRP40YKL012W ARI1P53111 347 aaKnown RBP6.91□□□□□ -1.3
PRP40YKL012W LRS4Q04087 347 aaKnown RBP6.91□□□□□ -1.3
PRP40YKL012W YBR182C-AQ8TGU6 64 aa6.91□□□□□ -1.3
PRP40YKL012W URA1P28272 314 aaPredicted RBP6.9□□□□□ -1.3
PRP40YKL012W HSL7P38274 827 aa6.9□□□□□ -1.3
PRP40YKL012W CIT3P43635 486 aa6.9□□□□□ -1.3
PRP40YKL012W YCL002CP25565 263 aa6.9□□□□□ -1.31
PRP40YKL012W WHI3P34761 661 aaKnown RBP6.9□□□□□ -1.31
PRP40YKL012W DID4P36108 232 aa6.9□□□□□ -1.31
PRP40YKL012W RET2P43621 546 aa6.9□□□□□ -1.31
PRP40YKL012W YGR153WP48238 217 aa6.9□□□□□ -1.31
PRP40YKL012W XYL2Q07993 356 aa6.9□□□□□ -1.31
PRP40YKL012W YEF3P16521 1044 aaKnown RBP6.89□□□□□ -1.31
PRP40YKL012W TRZ1P36159 838 aaPredicted RBP6.89□□□□□ -1.31
PRP40YKL012W RMP1Q12530 201 aa6.89□□□□□ -1.31
PRP40YKL012W NOT3P06102 836 aaKnown RBP6.88□□□□□ -1.31
PRP40YKL012W HSP78P33416 811 aa6.88□□□□□ -1.31
PRP40YKL012W MCX1P38323 520 aaPredicted RBP6.88□□□□□ -1.31
PRP40YKL012W NAB3P38996 802 aaKnown RBP RIP-Chip data6.88□□□□□ -1.31not detected
PRP40YKL012W PBP1P53297 722 aaKnown RBP6.88□□□□□ -1.31
PRP40YKL012W HDA1P53973 706 aa6.88□□□□□ -1.31
PRP40YKL012W MAP1Q01662 387 aaKnown RBP RIP-Chip data6.88□□□□□ -1.31not detected
PRP40YKL012W ECM9Q02202 377 aa6.88□□□□□ -1.31
PRP40YKL012W ATG16Q03818 150 aa6.88□□□□□ -1.31
PRP40YKL012W DIF1O13577 133 aa6.87□□□□□ -1.31
PRP40YKL012W PIF1P07271 859 aa6.87□□□□□ -1.31
PRP40YKL012W TRX2P22803 104 aaKnown RBP6.87□□□□□ -1.31
PRP40YKL012W NAM7P30771 971 aaKnown RBP6.87□□□□□ -1.31
PRP40YKL012W CYS3P31373 394 aaKnown RBP6.87□□□□□ -1.31
PRP40YKL012W TDA3P38758 523 aa6.87□□□□□ -1.31
PRP40YKL012W CEP3P40969 608 aa6.87□□□□□ -1.31
PRP40YKL012W UBC9P50623 157 aaPredicted RBP6.87□□□□□ -1.31
PRP40YKL012W PIP2P52960 996 aa6.87□□□□□ -1.31
PRP40YKL012W RCM1P53972 490 aa6.87□□□□□ -1.31
PRP40YKL012W MET14Q02196 202 aa6.87□□□□□ -1.31
PRP40YKL012W DAL3P32459 195 aa6.87□□□□□ -1.31
PRP40YKL012W STE13P33894 931 aa6.87□□□□□ -1.31
PRP40YKL012W RFC5P38251 354 aa6.87□□□□□ -1.31
PRP40YKL012W AKR1P39010 764 aa6.87□□□□□ -1.31
PRP40YKL012W PEX7P39108 375 aa6.87□□□□□ -1.31
PRP40YKL012W ECM16Q04217 1267 aaKnown RBP6.87□□□□□ -1.31
PRP40YKL012W ENA1P13587 1091 aa6.86□□□□□ -1.31
PRP40YKL012W DPB3P27344 201 aa6.86□□□□□ -1.31
PRP40YKL012W SET5P38890 526 aaKnown RBP6.86□□□□□ -1.31
PRP40YKL012W OYE3P41816 400 aaPredicted RBP6.86□□□□□ -1.31
PRP40YKL012W SHR5P41912 237 aa6.86□□□□□ -1.31
PRP40YKL012W ENA2Q01896 1091 aa6.86□□□□□ -1.31
PRP40YKL012W ENA5Q12691 1091 aa6.86□□□□□ -1.31
PRP40YKL012W RPS9AO13516 197 aaKnown RBP6.85□□□□□ -1.31
PRP40YKL012W SAP190P36123 1033 aa6.85□□□□□ -1.31
PRP40YKL012W PRY1P47032 299 aa6.85□□□□□ -1.31
PRP40YKL012W YGR021WP53212 290 aa6.85□□□□□ -1.31
PRP40YKL012W UBX4P54730 416 aa6.85□□□□□ -1.31
PRP40YKL012W YKR011CQ02209 353 aa6.85□□□□□ -1.31
PRP40YKL012W TDA6Q06466 467 aa6.85□□□□□ -1.31
PRP40YKL012W TRE1Q08919 783 aa6.85□□□□□ -1.31
PRP40YKL012W GAL1P04385 528 aa6.85□□□□□ -1.31
PRP40YKL012W TYE7P33122 291 aaPredicted RBP6.85□□□□□ -1.31
PRP40YKL012W NIC96P34077 839 aa6.85□□□□□ -1.31
PRP40YKL012W BIT2P38346 545 aa6.85□□□□□ -1.31
PRP40YKL012W IES5P40060 125 aa6.85□□□□□ -1.31
PRP40YKL012W YFL066CP43538 392 aa6.85□□□□□ -1.31
PRP40YKL012W RAI1P53063 387 aaKnown RBP6.85□□□□□ -1.31
PRP40YKL012W NPY1P53164 384 aa6.85□□□□□ -1.31
PRP40YKL012W PUF3Q07807 879 aaKnown RBP RIP-Chip data6.85□□□□□ -1.31not detected
PRP40YKL012W GBP2P25555 427 aaKnown RBP RIP-Chip data6.84□□□□□ -1.31not detected
PRP40YKL012W AIM26P32858 118 aa6.84□□□□□ -1.31
PRP40YKL012W HXT6P39003 570 aaKnown RBP6.84□□□□□ -1.31
PRP40YKL012W HXT7P39004 570 aa6.84□□□□□ -1.31
PRP40YKL012W VPS30Q02948 557 aa6.84□□□□□ -1.31
PRP40YKL012W PHM6Q05637 104 aa6.84□□□□□ -1.31
PRP40YKL012W THI21Q08975 551 aa6.84□□□□□ -1.31
PRP40YKL012W SPS1P08458 490 aa6.83□□□□□ -1.32
PRP40YKL012W PGI1P12709 554 aaKnown RBP6.83□□□□□ -1.32
PRP40YKL012W HEM12P32347 362 aaPredicted RBP6.83□□□□□ -1.32
PRP40YKL012W YKR051WP36142 418 aa6.83□□□□□ -1.32
PRP40YKL012W EMP65P40085 556 aa6.83□□□□□ -1.32
PRP40YKL012W CRR1Q05790 422 aa6.83□□□□□ -1.32
PRP40YKL012W THI72Q08579 599 aa6.83□□□□□ -1.32
PRP40YKL012W PRC1P00729 532 aa6.82□□□□□ -1.32
PRP40YKL012W PTP2P29461 750 aa6.82□□□□□ -1.32
PRP40YKL012W ABZ1P37254 787 aaPredicted RBP6.82□□□□□ -1.32
PRP40YKL012W BNA2P47125 453 aa6.82□□□□□ -1.32
Retrieved 100 of 5,963 RNA–protein pairs in 64.1 ms