RNA–Protein interactions for RNA: ENST00000637107.1

CLN3-256, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,946 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-256ENST00000637107 ARFGEF2Q9Y6D5 1785 aa21.67■■□□□ 1.06
CLN3-256ENST00000637107 ADCY9O60503 1353 aa21.67■■□□□ 1.06
CLN3-256ENST00000637107 DDR1Q08345 913 aa21.67■■□□□ 1.06
CLN3-256ENST00000637107 DDX58O95786 925 aaKnown RBP21.66■■□□□ 1.06
CLN3-256ENST00000637107 MAP3K2Q9Y2U5 619 aa21.66■■□□□ 1.06
CLN3-256ENST00000637107 GPTP24298 496 aa21.65■■□□□ 1.06
CLN3-256ENST00000637107 KSR2Q6VAB6 950 aa21.65■■□□□ 1.06
CLN3-256ENST00000637107 NIP7Q9Y221 180 aaKnown RBP eCLIP21.65■■□□□ 1.06
CLN3-256ENST00000637107 RGL2O15211 777 aa21.65■■□□□ 1.06
CLN3-256ENST00000637107 F6X3S4 739 aa21.64■■□□□ 1.05
CLN3-256ENST00000637107 POLRMTO00411 1230 aaKnown RBP21.64■■□□□ 1.05
CLN3-256ENST00000637107 POLD1P28340 1107 aa21.64■■□□□ 1.05
CLN3-256ENST00000637107 SETDB2Q96T68 719 aa21.64■■□□□ 1.05
CLN3-256ENST00000637107 TCIRG1Q13488 830 aa21.63■■□□□ 1.05
CLN3-256ENST00000637107 ZNF34Q8IZ26 560 aa21.63■■□□□ 1.05
CLN3-256ENST00000637107 GOLGB1Q14789 3259 aaKnown RBP21.63■■□□□ 1.05
CLN3-256ENST00000637107 UBN2Q6ZU65 1347 aa21.63■■□□□ 1.05
CLN3-256ENST00000637107 ATP10DQ9P241 1426 aa21.63■■□□□ 1.05
CLN3-256ENST00000637107 ATP5J2-PTCD1G3V325 749 aa21.63■■□□□ 1.05
CLN3-256ENST00000637107 ABCC4O15439 1325 aa21.63■■□□□ 1.05
CLN3-256ENST00000637107 ANKRD36CQ5JPF3 1778 aa21.62■■□□□ 1.05
CLN3-256ENST00000637107 FAM177BA6PVY3 158 aa21.62■■□□□ 1.05
CLN3-256ENST00000637107 MYD88Q99836 296 aa21.62■■□□□ 1.05
CLN3-256ENST00000637107 PARP3Q9Y6F1 533 aa21.62■■□□□ 1.05
CLN3-256ENST00000637107 DDRGK1Q96HY6 314 aa21.61■■□□□ 1.05
CLN3-256ENST00000637107 METTL22Q9BUU2 404 aaPredicted RBP21.61■■□□□ 1.05
CLN3-256ENST00000637107 API5Q9BZZ5 524 aaKnown RBP21.61■■□□□ 1.05
CLN3-256ENST00000637107 CHMP4BQ9H444 224 aaKnown RBP21.61■■□□□ 1.05
CLN3-256ENST00000637107 AFDNP55196 1824 aaKnown RBP21.61■■□□□ 1.05
CLN3-256ENST00000637107 CARMIL3Q8ND23 1372 aa21.61■■□□□ 1.05
CLN3-256ENST00000637107 ZBTB7BO15156 539 aaPredicted RBP21.61■■□□□ 1.05
CLN3-256ENST00000637107 SERPINB2P05120 415 aa21.61■■□□□ 1.05
CLN3-256ENST00000637107 HSP90AB3PQ58FF7 597 aa21.61■■□□□ 1.05
CLN3-256ENST00000637107 DNAAF4Q8WXU2 420 aa21.61■■□□□ 1.05
CLN3-256ENST00000637107 PTPRCP08575 1304 aa21.6■■□□□ 1.05
CLN3-256ENST00000637107 SUSD4Q5VX71 490 aa21.59■■□□□ 1.05
CLN3-256ENST00000637107 SMC5Q8IY18 1101 aa21.59■■□□□ 1.05
CLN3-256ENST00000637107 ISCA1Q9BUE6 129 aa21.59■■□□□ 1.05
CLN3-256ENST00000637107 IGKV5-2P06315 115 aa21.58■■□□□ 1.04
CLN3-256ENST00000637107 NLRP10Q86W26 655 aa21.58■■□□□ 1.04
CLN3-256ENST00000637107 CCDC24Q8N4L8 307 aa21.58■■□□□ 1.04
CLN3-256ENST00000637107 CWF19L2Q2TBE0 894 aaKnown RBP21.57■■□□□ 1.04
CLN3-256ENST00000637107 SLC4A10Q6U841 1118 aa21.57■■□□□ 1.04
CLN3-256ENST00000637107 NBPF5PQ86XG9 351 aaPredicted RBP21.57■■□□□ 1.04
CLN3-256ENST00000637107 LRP5O75197 1615 aa21.57■■□□□ 1.04
CLN3-256ENST00000637107 NRXN2Q9P2S2 1712 aa21.57■■□□□ 1.04
CLN3-256ENST00000637107 NEXNQ0ZGT2 675 aa21.56■■□□□ 1.04
CLN3-256ENST00000637107 PARP10Q53GL7 1025 aa21.55■■□□□ 1.04
CLN3-256ENST00000637107 PRR5LQ6MZQ0 368 aa21.55■■□□□ 1.04
CLN3-256ENST00000637107 NUTM1Q86Y26 1132 aa21.55■■□□□ 1.04
CLN3-256ENST00000637107 PPP1R1BQ9UD71 204 aaPredicted RBP21.55■■□□□ 1.04
CLN3-256ENST00000637107 TRIM28Q13263 835 aaKnown RBP21.55■■□□□ 1.04
CLN3-256ENST00000637107 BEND3Q5T5X7 828 aa21.55■■□□□ 1.04
CLN3-256ENST00000637107 KLHL34Q8N239 644 aa21.55■■□□□ 1.04
CLN3-256ENST00000637107 CNBD1Q8NA66 436 aa21.55■■□□□ 1.04
CLN3-256ENST00000637107 NEURL1BA8MQ27 555 aa21.54■■□□□ 1.04
CLN3-256ENST00000637107 NPHP1O15259 732 aa21.54■■□□□ 1.04
CLN3-256ENST00000637107 NTSR2O95665 410 aa21.54■■□□□ 1.04
CLN3-256ENST00000637107 TPTE2Q6XPS3 522 aa21.54■■□□□ 1.04
CLN3-256ENST00000637107 SYNE4Q8N205 404 aa21.54■■□□□ 1.04
CLN3-256ENST00000637107 PPP1R42Q7Z4L9 355 aa21.53■■□□□ 1.04
CLN3-256ENST00000637107 RTL5Q5HYW3 569 aaPredicted RBP21.53■■□□□ 1.04
CLN3-256ENST00000637107 CCDC191Q8NCU4 936 aa21.53■■□□□ 1.04
CLN3-256ENST00000637107 LINS1Q8NG48 757 aa21.53■■□□□ 1.04
CLN3-256ENST00000637107 UTP14AQ9BVJ6 771 aaKnown RBP21.53■■□□□ 1.04
CLN3-256ENST00000637107 TRMT112Q9UI30 125 aaKnown RBP21.53■■□□□ 1.04
CLN3-256ENST00000637107 ERFEQ4G0M1 354 aa21.52■■□□□ 1.04
CLN3-256ENST00000637107 FHDC1Q9C0D6 1143 aaPredicted RBP21.52■■□□□ 1.04
CLN3-256ENST00000637107 NYXQ9GZU5 481 aa21.52■■□□□ 1.04
CLN3-256ENST00000637107 CWC25Q9NXE8 425 aaPredicted RBP21.52■■□□□ 1.04
CLN3-256ENST00000637107 SEC24BO95487 1268 aa21.51■■□□□ 1.03
CLN3-256ENST00000637107 GTF2E1P29083 439 aaPredicted RBP21.51■■□□□ 1.03
CLN3-256ENST00000637107 JARID2Q92833 1246 aaPredicted RBP21.51■■□□□ 1.03
CLN3-256ENST00000637107 FAM89AQ96GI7 184 aa21.51■■□□□ 1.03
CLN3-256ENST00000637107 NUCB1Q02818 461 aa21.51■■□□□ 1.03
CLN3-256ENST00000637107 INTS3Q68E01 1043 aaKnown RBP21.51■■□□□ 1.03
CLN3-256ENST00000637107 C10orf71Q711Q0 1435 aa21.51■■□□□ 1.03
CLN3-256ENST00000637107 C1orf115Q9H7X2 142 aa21.51■■□□□ 1.03
CLN3-256ENST00000637107 UTRNP46939 3433 aa21.5■■□□□ 1.03
CLN3-256ENST00000637107 ABCC12Q96J65 1359 aa21.5■■□□□ 1.03
CLN3-256ENST00000637107 IBTKQ9P2D0 1353 aaPredicted RBP21.5■■□□□ 1.03
CLN3-256ENST00000637107 KIF13BQ9NQT8 1826 aa21.49■■□□□ 1.03
CLN3-256ENST00000637107 ST5P78524 1137 aa21.49■■□□□ 1.03
CLN3-256ENST00000637107 GCKRQ14397 625 aa21.49■■□□□ 1.03
CLN3-256ENST00000637107 SRCIN1Q9C0H9 1055 aa21.49■■□□□ 1.03
CLN3-256ENST00000637107 ANKRD31Q8N7Z5 1873 aa21.49■■□□□ 1.03
CLN3-256ENST00000637107 ZBTB38Q8NAP3 1195 aaPredicted RBP21.48■■□□□ 1.03
CLN3-256ENST00000637107 SH3TC1Q8TE82 1336 aa21.48■■□□□ 1.03
CLN3-256ENST00000637107 PXDNLA1KZ92 1463 aa21.48■■□□□ 1.03
CLN3-256ENST00000637107 NLGN2Q8NFZ4 835 aa21.47■■□□□ 1.03
CLN3-256ENST00000637107 GCC1Q96CN9 775 aa21.47■■□□□ 1.03
CLN3-256ENST00000637107 CD2APQ9Y5K6 639 aa21.47■■□□□ 1.03
CLN3-256ENST00000637107 SIRT2Q8IXJ6 389 aa21.47■■□□□ 1.03
CLN3-256ENST00000637107 SYT17Q9BSW7 474 aa21.47■■□□□ 1.03
CLN3-256ENST00000637107 BRIP1Q9BX63 1249 aa21.47■■□□□ 1.03
CLN3-256ENST00000637107 ALDH1L1O75891 902 aa21.46■■□□□ 1.03
CLN3-256ENST00000637107 PCCAP05165 728 aaPredicted RBP21.46■■□□□ 1.03
CLN3-256ENST00000637107 HCLS1P14317 486 aaPredicted RBP21.46■■□□□ 1.03
CLN3-256ENST00000637107 UBE3BQ7Z3V4 1068 aa21.45■■□□□ 1.02
CLN3-256ENST00000637107 CHD1LQ86WJ1 897 aa21.45■■□□□ 1.02
Retrieved 100 of 20,778 RNA–protein pairs in 58 ms