RNA–Protein interactions for RNA: ENST00000624354.3

VCL-207, Transcript of vinculin, humanhuman

TSL 2

Gene VCL, Length 3,307 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCL-207ENST00000624354 GOLGA6L6A8MZA4 724 aa10.33□□□□□ -0.76
VCL-207ENST00000624354 ANXA1P04083 346 aa10.33□□□□□ -0.76
VCL-207ENST00000624354 KRT85P78386 507 aa10.33□□□□□ -0.76
VCL-207ENST00000624354 TAF7LQ5H9L4 462 aa10.33□□□□□ -0.76
VCL-207ENST00000624354 LARP1BQ659C4 914 aaKnown RBP10.33□□□□□ -0.76
VCL-207ENST00000624354 KCNB2Q92953 911 aa10.33□□□□□ -0.76
VCL-207ENST00000624354 NWD1Q149M9 1564 aa10.33□□□□□ -0.76
VCL-207ENST00000624354 CCDC171Q6TFL3 1326 aa10.33□□□□□ -0.76
VCL-207ENST00000624354 U2AF2P26368 475 aaKnown RBP eCLIP10.33□□□□□ -0.761e-6■■■□□ 15.9
VCL-207ENST00000624354 NECTIN1Q15223 517 aa10.33□□□□□ -0.76
VCL-207ENST00000624354 ME3Q16798 604 aa10.33□□□□□ -0.76
VCL-207ENST00000624354 C17orf53Q8N3J3 647 aaPredicted RBP10.33□□□□□ -0.76
VCL-207ENST00000624354 LGR6Q9HBX8 967 aa10.33□□□□□ -0.76
VCL-207ENST00000624354 PIK3C2AO00443 1686 aa10.33□□□□□ -0.76
VCL-207ENST00000624354 HIP1O00291 1037 aa10.33□□□□□ -0.76
VCL-207ENST00000624354 PDCP20941 246 aa10.33□□□□□ -0.76
VCL-207ENST00000624354 PSMA5P28066 241 aa10.33□□□□□ -0.76
VCL-207ENST00000624354 ORAI2Q96SN7 254 aa10.33□□□□□ -0.76
VCL-207ENST00000624354 DBF4Q9UBU7 674 aaPredicted RBP10.33□□□□□ -0.76
VCL-207ENST00000624354 N4BP2Q86UW6 1770 aaPredicted RBP10.33□□□□□ -0.76
VCL-207ENST00000624354 ALDH1L1O75891 902 aa10.32□□□□□ -0.76
VCL-207ENST00000624354 CHAF1AQ13111 956 aaPredicted RBP10.32□□□□□ -0.76
VCL-207ENST00000624354 NECAB1Q8N987 351 aa10.32□□□□□ -0.76
VCL-207ENST00000624354 RBM8AQ9Y5S9 174 aaKnown RBP10.32□□□□□ -0.76
VCL-207ENST00000624354 DIP2AQ14689 1571 aa10.32□□□□□ -0.76
VCL-207ENST00000624354 BTBD11A6QL63 1104 aa10.32□□□□□ -0.76
VCL-207ENST00000624354 DTNBO60941 627 aa10.32□□□□□ -0.76
VCL-207ENST00000624354 CREB3L3Q68CJ9 461 aa10.32□□□□□ -0.76
VCL-207ENST00000624354 AACSQ86V21 672 aa10.32□□□□□ -0.76
VCL-207ENST00000624354 DDX54Q8TDD1 881 aaKnown RBP10.32□□□□□ -0.76
VCL-207ENST00000624354 FEZ1Q99689 392 aa10.32□□□□□ -0.76
VCL-207ENST00000624354 ADCY9O60503 1353 aa10.32□□□□□ -0.76
VCL-207ENST00000624354 KCNQ3O43525 872 aa10.32□□□□□ -0.76
VCL-207ENST00000624354 NUP62CLQ9H1M0 184 aa10.32□□□□□ -0.76
VCL-207ENST00000624354 PA2G4Q9UQ80 394 aaKnown RBP10.32□□□□□ -0.76
VCL-207ENST00000624354 TCHHQ07283 1943 aa10.31□□□□□ -0.76
VCL-207ENST00000624354 ZBTB22O15209 634 aa10.31□□□□□ -0.76
VCL-207ENST00000624354 ST3GAL1Q11201 340 aa10.31□□□□□ -0.76
VCL-207ENST00000624354 MAP3K11Q16584 847 aa10.31□□□□□ -0.76
VCL-207ENST00000624354 RNF20Q5VTR2 975 aa10.31□□□□□ -0.76
VCL-207ENST00000624354 KIAA1524Q8TCG1 905 aa10.31□□□□□ -0.76
VCL-207ENST00000624354 FAM200AQ8TCP9 573 aa10.31□□□□□ -0.76
VCL-207ENST00000624354 TPCN1Q9ULQ1 816 aa10.31□□□□□ -0.76
VCL-207ENST00000624354 MAP3K2Q9Y2U5 619 aa10.31□□□□□ -0.76
VCL-207ENST00000624354 ANKARQ7Z5J8 1434 aa10.31□□□□□ -0.76
VCL-207ENST00000624354 GOLGA6L4A6NEF3 574 aa10.31□□□□□ -0.76
VCL-207ENST00000624354 ANKRD1Q15327 319 aa10.31□□□□□ -0.76
VCL-207ENST00000624354 TTC6Q86TZ1 520 aa10.31□□□□□ -0.76
VCL-207ENST00000624354 PLCD3Q8N3E9 789 aa10.31□□□□□ -0.76
VCL-207ENST00000624354 SPC24Q8NBT2 197 aa10.31□□□□□ -0.76
VCL-207ENST00000624354 IP6K1Q92551 441 aa10.31□□□□□ -0.76
VCL-207ENST00000624354 MAP4K1Q92918 833 aa10.31□□□□□ -0.76
VCL-207ENST00000624354 OGFRQ9NZT2 677 aa10.31□□□□□ -0.76
VCL-207ENST00000624354 AP5Z1O43299 807 aa10.3□□□□□ -0.76
VCL-207ENST00000624354 NBPF6Q5VWK0 638 aa10.3□□□□□ -0.76
VCL-207ENST00000624354 FERMT3Q86UX7 667 aa10.3□□□□□ -0.76
VCL-207ENST00000624354 NBPF4Q96M43 638 aa10.3□□□□□ -0.76
VCL-207ENST00000624354 CHMP3Q9Y3E7 222 aa10.3□□□□□ -0.76
VCL-207ENST00000624354 ELP1O95163 1332 aa10.3□□□□□ -0.76
VCL-207ENST00000624354 FER1L4A9Z1Z3 1794 aa10.3□□□□□ -0.76
VCL-207ENST00000624354 G3BP1Q13283 466 aaKnown RBP eCLIP10.3□□□□□ -0.763e-6■■■□□ 19
VCL-207ENST00000624354 ZNF530Q6P9A1 599 aaPredicted RBP10.3□□□□□ -0.76
VCL-207ENST00000624354 BLOC1S2Q6QNY1 142 aa10.3□□□□□ -0.76
VCL-207ENST00000624354 KSR2Q6VAB6 950 aa10.3□□□□□ -0.76
VCL-207ENST00000624354 FAM227BQ96M60 508 aa10.3□□□□□ -0.76
VCL-207ENST00000624354 SLC27A2O14975 620 aa10.3□□□□□ -0.76
VCL-207ENST00000624354 NMIQ13287 307 aaPredicted RBP10.3□□□□□ -0.76
VCL-207ENST00000624354 AKAP4Q5JQC9 854 aa10.3□□□□□ -0.76
VCL-207ENST00000624354 CDC37L1Q7L3B6 337 aa10.3□□□□□ -0.76
VCL-207ENST00000624354 ANKRD7Q92527 254 aa10.3□□□□□ -0.76
VCL-207ENST00000624354 SCAND2PQ9GZW5 306 aaPredicted RBP10.3□□□□□ -0.76
VCL-207ENST00000624354 GABPB1Q06547 395 aaPredicted RBP10.29□□□□□ -0.76
VCL-207ENST00000624354 PLEKHO1Q53GL0 409 aaPredicted RBP10.29□□□□□ -0.76
VCL-207ENST00000624354 SETD1BQ9UPS6 1966 aaKnown RBP10.29□□□□□ -0.76
VCL-207ENST00000624354 RIOK3O14730 519 aaKnown RBP10.29□□□□□ -0.76
VCL-207ENST00000624354 TYRO3Q06418 890 aa10.29□□□□□ -0.76
VCL-207ENST00000624354 CAMK4Q16566 473 aa10.29□□□□□ -0.76
VCL-207ENST00000624354 CWF19L2Q2TBE0 894 aaKnown RBP10.29□□□□□ -0.76
VCL-207ENST00000624354 MPRIPQ6WCQ1 1025 aa10.29□□□□□ -0.76
VCL-207ENST00000624354 TNMDQ9H2S6 317 aa10.29□□□□□ -0.76
VCL-207ENST00000624354 KCNF1Q9H3M0 494 aa10.29□□□□□ -0.76
VCL-207ENST00000624354 PYCARDQ9ULZ3 195 aa10.29□□□□□ -0.76
VCL-207ENST00000624354 LIG1P18858 919 aa10.28□□□□□ -0.76
VCL-207ENST00000624354 MAPK8IP2Q13387 824 aaPredicted RBP10.28□□□□□ -0.76
VCL-207ENST00000624354 FAM173BQ6P4H8 233 aa10.28□□□□□ -0.76
VCL-207ENST00000624354 FSD1Q9BTV5 496 aa10.28□□□□□ -0.76
VCL-207ENST00000624354 CCDC8Q9H0W5 538 aaPredicted RBP10.28□□□□□ -0.76
VCL-207ENST00000624354 ZNF335Q9H4Z2 1342 aaPredicted RBP10.28□□□□□ -0.76
VCL-207ENST00000624354 CRYBG1Q9Y4K1 1723 aa10.28□□□□□ -0.76
VCL-207ENST00000624354 CCDC66A2RUB6 948 aa10.28□□□□□ -0.76
VCL-207ENST00000624354 CABLES1Q8TDN4 633 aa10.28□□□□□ -0.76
VCL-207ENST00000624354 EAF2Q96CJ1 260 aaPredicted RBP10.28□□□□□ -0.76
VCL-207ENST00000624354 SPATA32Q96LK8 384 aa10.28□□□□□ -0.76
VCL-207ENST00000624354 DDX19AQ9NUU7 478 aaKnown RBP10.28□□□□□ -0.76
VCL-207ENST00000624354 DACT1Q9NYF0 836 aa10.28□□□□□ -0.76
VCL-207ENST00000624354 ADAMTSL3P82987 1691 aa10.28□□□□□ -0.76
VCL-207ENST00000624354 GRM8O00222 908 aa10.28□□□□□ -0.76
VCL-207ENST00000624354 C1orf141Q5JVX7 400 aa10.28□□□□□ -0.76
VCL-207ENST00000624354 LINS1Q8NG48 757 aa10.28□□□□□ -0.76
VCL-207ENST00000624354 MRVI1Q9Y6F6 885 aa10.28□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 41.5 ms