RNA–Protein interactions for RNA: ENST00000622516.4

CUX1-221, Transcript of cut like homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CUX1, Length 2,990 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-221ENST00000622516 PANK2Q9BZ23 570 aa12.86□□□□□ -0.35
CUX1-221ENST00000622516 RAD50Q92878 1312 aa12.86□□□□□ -0.35
CUX1-221ENST00000622516 PRPF40BQ6NWY9 871 aaKnown RBP12.86□□□□□ -0.35
CUX1-221ENST00000622516 GOLGA6L3A6NEY3 463 aa12.85□□□□□ -0.35
CUX1-221ENST00000622516 NCLP19338 710 aaKnown RBP12.85□□□□□ -0.35
CUX1-221ENST00000622516 COL9A3Q14050 684 aaPredicted RBP12.85□□□□□ -0.35
CUX1-221ENST00000622516 USP42Q9H9J4 1324 aaKnown RBP12.85□□□□□ -0.35
CUX1-221ENST00000622516 A0A0G2JS52 829 aa12.85□□□□□ -0.35
CUX1-221ENST00000622516 ERVV-2B6SEH9 535 aa12.85□□□□□ -0.35
CUX1-221ENST00000622516 RFX5P48382 616 aaPredicted RBP12.85□□□□□ -0.35
CUX1-221ENST00000622516 ADCK5Q3MIX3 580 aa12.85□□□□□ -0.35
CUX1-221ENST00000622516 SYTL4Q96C24 671 aaPredicted RBP12.85□□□□□ -0.35
CUX1-221ENST00000622516 ZNF594Q96JF6 807 aaPredicted RBP12.85□□□□□ -0.35
CUX1-221ENST00000622516 XRCC6P12956 609 aaKnown RBP eCLIP12.84□□□□□ -0.35
CUX1-221ENST00000622516 ANAPC15P60006 121 aa12.84□□□□□ -0.35
CUX1-221ENST00000622516 NUCB2P80303 420 aa12.84□□□□□ -0.35
CUX1-221ENST00000622516 NMIQ13287 307 aaPredicted RBP12.84□□□□□ -0.35
CUX1-221ENST00000622516 EVI5LQ96CN4 794 aa12.84□□□□□ -0.35
CUX1-221ENST00000622516 FSD1Q9BTV5 496 aa12.84□□□□□ -0.35
CUX1-221ENST00000622516 DBNLQ9UJU6 430 aaKnown RBP12.84□□□□□ -0.35
CUX1-221ENST00000622516 CYP2E1P05181 493 aaPredicted RBP12.84□□□□□ -0.35
CUX1-221ENST00000622516 TMOD3Q9NYL9 352 aa12.84□□□□□ -0.35
CUX1-221ENST00000622516 DDX49Q9Y6V7 483 aaKnown RBP12.84□□□□□ -0.35
CUX1-221ENST00000622516 MRC1P22897 1456 aa12.84□□□□□ -0.35
CUX1-221ENST00000622516 A0A0D9SFI3 127 aa12.84□□□□□ -0.35
CUX1-221ENST00000622516 CASTP20810 708 aaKnown RBP12.84□□□□□ -0.35
CUX1-221ENST00000622516 PIGBQ92521 554 aa12.84□□□□□ -0.35
CUX1-221ENST00000622516 CWC22Q9HCG8 908 aaKnown RBP12.84□□□□□ -0.35
CUX1-221ENST00000622516 PKD1L3Q7Z443 1732 aa12.84□□□□□ -0.35
CUX1-221ENST00000622516 PRPF40AO75400 957 aaKnown RBP12.83□□□□□ -0.36
CUX1-221ENST00000622516 CASP7P55210 303 aa12.83□□□□□ -0.36
CUX1-221ENST00000622516 TPRNQ4KMQ1 711 aa12.83□□□□□ -0.36
CUX1-221ENST00000622516 GAS2L3Q86XJ1 694 aa12.83□□□□□ -0.36
CUX1-221ENST00000622516 DNAJC2Q99543 621 aaKnown RBP12.83□□□□□ -0.36
CUX1-221ENST00000622516 DBNDD2Q9BQY9 259 aa12.83□□□□□ -0.36
CUX1-221ENST00000622516 PDIA4P13667 645 aaKnown RBP12.83□□□□□ -0.36
CUX1-221ENST00000622516 KCNJ4P48050 445 aa12.83□□□□□ -0.36
CUX1-221ENST00000622516 PDE4CQ08493 712 aa12.83□□□□□ -0.36
CUX1-221ENST00000622516 TNNI3KQ59H18 835 aa12.83□□□□□ -0.36
CUX1-221ENST00000622516 DNAJC10Q8IXB1 793 aa12.83□□□□□ -0.36
CUX1-221ENST00000622516 NEUROD6Q96NK8 337 aa12.83□□□□□ -0.36
CUX1-221ENST00000622516 COPRSQ9NQ92 184 aa12.83□□□□□ -0.36
CUX1-221ENST00000622516 FPGT-TNNI3KV9GXZ4 949 aa12.83□□□□□ -0.36
CUX1-221ENST00000622516 GOLGA6L22H0YM25 854 aa12.82□□□□□ -0.36
CUX1-221ENST00000622516 AK2P54819 239 aa12.82□□□□□ -0.36
CUX1-221ENST00000622516 TIMM10P62072 90 aa12.82□□□□□ -0.36
CUX1-221ENST00000622516 SLFNL1Q499Z3 407 aa12.82□□□□□ -0.36
CUX1-221ENST00000622516 HOMEZQ8IX15 550 aa12.82□□□□□ -0.36
CUX1-221ENST00000622516 TCEANC2Q96MN5 208 aa12.82□□□□□ -0.36
CUX1-221ENST00000622516 FOXO4P98177 505 aa12.82□□□□□ -0.36
CUX1-221ENST00000622516 NKX1-1Q15270 411 aaPredicted RBP12.82□□□□□ -0.36
CUX1-221ENST00000622516 JAKMIP1Q96N16 626 aaKnown RBP12.82□□□□□ -0.36
CUX1-221ENST00000622516 CWC25Q9NXE8 425 aaPredicted RBP12.82□□□□□ -0.36
CUX1-221ENST00000622516 TAF6LQ9Y6J9 622 aa12.82□□□□□ -0.36
CUX1-221ENST00000622516 AFDNP55196 1824 aaKnown RBP12.81□□□□□ -0.36
CUX1-221ENST00000622516 RABL6Q3YEC7 729 aaPredicted RBP12.81□□□□□ -0.36
CUX1-221ENST00000622516 ZNF589Q86UQ0 364 aaPredicted RBP12.81□□□□□ -0.36
CUX1-221ENST00000622516 SYNE4Q8N205 404 aa12.81□□□□□ -0.36
CUX1-221ENST00000622516 RUFY2Q8WXA3 655 aa12.81□□□□□ -0.36
CUX1-221ENST00000622516 LRRC24Q50LG9 513 aa12.81□□□□□ -0.36
CUX1-221ENST00000622516 FSD2A1L4K1 749 aa12.81□□□□□ -0.36
CUX1-221ENST00000622516 H7C1W4 665 aa12.81□□□□□ -0.36
CUX1-221ENST00000622516 MCM2P49736 904 aa12.81□□□□□ -0.36
CUX1-221ENST00000622516 DDX46Q7L014 1031 aaKnown RBP12.81□□□□□ -0.36
CUX1-221ENST00000622516 RUFY3Q7L099 469 aa12.81□□□□□ -0.36
CUX1-221ENST00000622516 SEC62Q99442 399 aaKnown RBP12.81□□□□□ -0.36
CUX1-221ENST00000622516 ADAMTS2O95450 1211 aa12.8□□□□□ -0.36
CUX1-221ENST00000622516 LARGE1O95461 756 aa12.8□□□□□ -0.36
CUX1-221ENST00000622516 CUL4AQ13619 759 aa12.8□□□□□ -0.36
CUX1-221ENST00000622516 CCDC129Q6ZRS4 1044 aa12.8□□□□□ -0.36
CUX1-221ENST00000622516 FAM89AQ96GI7 184 aa12.8□□□□□ -0.36
CUX1-221ENST00000622516 PUS3Q9BZE2 481 aaKnown RBP12.8□□□□□ -0.36
CUX1-221ENST00000622516 RBM8AQ9Y5S9 174 aaKnown RBP12.8□□□□□ -0.36
CUX1-221ENST00000622516 GLI3P10071 1580 aa12.8□□□□□ -0.36
CUX1-221ENST00000622516 GPTP24298 496 aa12.8□□□□□ -0.36
CUX1-221ENST00000622516 GDPD2Q9HCC8 539 aa12.8□□□□□ -0.36
CUX1-221ENST00000622516 LMBRD1Q9NUN5 540 aa12.8□□□□□ -0.36
CUX1-221ENST00000622516 ARFGEF2Q9Y6D5 1785 aa12.79□□□□□ -0.36
CUX1-221ENST00000622516 L1TD1Q5T7N2 865 aaKnown RBP12.79□□□□□ -0.36
CUX1-221ENST00000622516 CAVIN1Q6NZI2 390 aaKnown RBP12.79□□□□□ -0.36
CUX1-221ENST00000622516 ATG3Q9NT62 314 aa12.79□□□□□ -0.36
CUX1-221ENST00000622516 CCDC171Q6TFL3 1326 aa12.79□□□□□ -0.36
CUX1-221ENST00000622516 AEBP2Q6ZN18 517 aaPredicted RBP12.79□□□□□ -0.36
CUX1-221ENST00000622516 TTC14Q96N46 770 aa12.79□□□□□ -0.36
CUX1-221ENST00000622516 RBM27Q9P2N5 1060 aaKnown RBP12.79□□□□□ -0.36
CUX1-221ENST00000622516 NSFL1CQ9UNZ2 370 aaKnown RBP12.79□□□□□ -0.36
CUX1-221ENST00000622516 KCPQ6ZWJ8 1503 aa12.78□□□□□ -0.36
CUX1-221ENST00000622516 CLEC17AQ6ZS10 378 aa12.78□□□□□ -0.36
CUX1-221ENST00000622516 ABCC6O95255 1503 aa12.78□□□□□ -0.36
CUX1-221ENST00000622516 NECTIN1Q15223 517 aa12.78□□□□□ -0.36
CUX1-221ENST00000622516 SKOR2Q2VWA4 1001 aaPredicted RBP12.78□□□□□ -0.36
CUX1-221ENST00000622516 CREB3L3Q68CJ9 461 aa12.78□□□□□ -0.36
CUX1-221ENST00000622516 ATG9AQ7Z3C6 839 aa12.78□□□□□ -0.36
CUX1-221ENST00000622516 TAOK2Q9UL54 1235 aa12.78□□□□□ -0.36
CUX1-221ENST00000622516 PARP4Q9UKK3 1724 aaKnown RBP12.78□□□□□ -0.36
CUX1-221ENST00000622516 HLFQ16534 295 aa12.78□□□□□ -0.36
CUX1-221ENST00000622516 CCDC83Q8IWF9 413 aa12.77□□□□□ -0.36
CUX1-221ENST00000622516 NECAB1Q8N987 351 aa12.77□□□□□ -0.36
CUX1-221ENST00000622516 GPT2Q8TD30 523 aa12.77□□□□□ -0.36
CUX1-221ENST00000622516 SLC4A9Q96Q91 983 aa12.77□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms