RNA–Protein interactions for RNA: ENST00000613421.4

GGA3-220, Transcript of golgi associated, gamma adaptin ear containing, ARF binding protein 3, humanhuman

TSL 2

Gene GGA3, Length 5,156 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GGA3-220ENST00000613421 STX1AQ16623 288 aa16.03■□□□□ 0.16
GGA3-220ENST00000613421 IQCA1Q86XH1 822 aa16.03■□□□□ 0.16
GGA3-220ENST00000613421 NCOA7Q8NI08 942 aa16.03■□□□□ 0.16
GGA3-220ENST00000613421 CTCFLQ8NI51 663 aaPredicted RBP16.03■□□□□ 0.16
GGA3-220ENST00000613421 ORC3Q9UBD5 711 aaPredicted RBP16.03■□□□□ 0.16
GGA3-220ENST00000613421 ATP10AO60312 1499 aa16.03■□□□□ 0.16
GGA3-220ENST00000613421 TCEANC2Q96MN5 208 aa16.03■□□□□ 0.16
GGA3-220ENST00000613421 CHMLP26374 656 aa16.02■□□□□ 0.16
GGA3-220ENST00000613421 G2E3Q7L622 706 aa16.02■□□□□ 0.16
GGA3-220ENST00000613421 USP48Q86UV5 1035 aa16.02■□□□□ 0.16
GGA3-220ENST00000613421 RANBP6O60518 1105 aaKnown RBP16.02■□□□□ 0.16
GGA3-220ENST00000613421 HCLS1P14317 486 aaPredicted RBP16.02■□□□□ 0.16
GGA3-220ENST00000613421 USP5P45974 858 aa16.02■□□□□ 0.16
GGA3-220ENST00000613421 LMBR1LQ6UX01 489 aa16.02■□□□□ 0.16
GGA3-220ENST00000613421 TANGO6Q9C0B7 1094 aa16.02■□□□□ 0.16
GGA3-220ENST00000613421 ZHX3Q9H4I2 956 aa16.02■□□□□ 0.16
GGA3-220ENST00000613421 SBNO2Q9Y2G9 1366 aa16.02■□□□□ 0.16
GGA3-220ENST00000613421 ZNF287Q9HBT7 754 aa16.02■□□□□ 0.15
GGA3-220ENST00000613421 LUC7LQ9NQ29 371 aaKnown RBP16.02■□□□□ 0.15
GGA3-220ENST00000613421 NMIQ13287 307 aaPredicted RBP16.02■□□□□ 0.15
GGA3-220ENST00000613421 SBNO1A3KN83 1393 aa16.01■□□□□ 0.15
GGA3-220ENST00000613421 ZNF165P49910 485 aa16.01■□□□□ 0.15
GGA3-220ENST00000613421 PHAXQ9H814 394 aaKnown RBP16.01■□□□□ 0.15
GGA3-220ENST00000613421 CHL1O00533 1208 aa16.01■□□□□ 0.15
GGA3-220ENST00000613421 ZPR1O75312 459 aa16.01■□□□□ 0.15
GGA3-220ENST00000613421 CWF19L2Q2TBE0 894 aaKnown RBP16.01■□□□□ 0.15
GGA3-220ENST00000613421 MCMDC2Q4G0Z9 681 aa16.01■□□□□ 0.15
GGA3-220ENST00000613421 ZCRB1Q8TBF4 217 aaKnown RBP16.01■□□□□ 0.15
GGA3-220ENST00000613421 F13A1P00488 732 aa16.01■□□□□ 0.15
GGA3-220ENST00000613421 IARSP41252 1262 aaKnown RBP16.01■□□□□ 0.15
GGA3-220ENST00000613421 GIMAP6Q6P9H5 292 aa16.01■□□□□ 0.15
GGA3-220ENST00000613421 PANK2Q9BZ23 570 aa16.01■□□□□ 0.15
GGA3-220ENST00000613421 TBX22Q9Y458 520 aa16.01■□□□□ 0.15
GGA3-220ENST00000613421 NPHP3Q7Z494 1330 aa16.01■□□□□ 0.15
GGA3-220ENST00000613421 BMP2KQ9NSY1 1161 aaPredicted RBP16.01■□□□□ 0.15
GGA3-220ENST00000613421 EPB41L2O43491 1005 aaKnown RBP16■□□□□ 0.15
GGA3-220ENST00000613421 CAVIN2O95810 425 aa16■□□□□ 0.15
GGA3-220ENST00000613421 ZFYP08048 801 aaPredicted RBP16■□□□□ 0.15
GGA3-220ENST00000613421 PIP4K2BP78356 416 aa16■□□□□ 0.15
GGA3-220ENST00000613421 TMEM67Q5HYA8 995 aa16■□□□□ 0.15
GGA3-220ENST00000613421 ZGPATQ8N5A5 531 aaKnown RBP16■□□□□ 0.15
GGA3-220ENST00000613421 CNNM3Q8NE01 707 aa16■□□□□ 0.15
GGA3-220ENST00000613421 IP6K1Q92551 441 aa16■□□□□ 0.15
GGA3-220ENST00000613421 MKNK2Q9HBH9 465 aa16■□□□□ 0.15
GGA3-220ENST00000613421 DZIP1Q86YF9 867 aaKnown RBP16■□□□□ 0.15
GGA3-220ENST00000613421 PDCL2Q8N4E4 241 aa16■□□□□ 0.15
GGA3-220ENST00000613421 KCNA6P17658 529 aa16■□□□□ 0.15
GGA3-220ENST00000613421 IL15P40933 162 aaPredicted RBP16■□□□□ 0.15
GGA3-220ENST00000613421 METAP2P50579 478 aaKnown RBP eCLIP16■□□□□ 0.15
GGA3-220ENST00000613421 TXLNBQ8N3L3 684 aa16■□□□□ 0.15
GGA3-220ENST00000613421 SSBP05455 408 aaKnown RBP eCLIP16■□□□□ 0.15
GGA3-220ENST00000613421 CFAP65Q6ZU64 1925 aaKnown RBP16■□□□□ 0.15
GGA3-220ENST00000613421 NEMFO60524 1076 aa15.99■□□□□ 0.15
GGA3-220ENST00000613421 PPFIA3O75145 1194 aa15.99■□□□□ 0.15
GGA3-220ENST00000613421 MICU3Q86XE3 530 aa15.99■□□□□ 0.15
GGA3-220ENST00000613421 CCDC66A2RUB6 948 aa15.99■□□□□ 0.15
GGA3-220ENST00000613421 ERLIN1O75477 346 aa15.99■□□□□ 0.15
GGA3-220ENST00000613421 POLR3DP05423 398 aaPredicted RBP15.99■□□□□ 0.15
GGA3-220ENST00000613421 RBM5P52756 815 aaKnown RBP eCLIP15.99■□□□□ 0.155e-10■■■■□ 19.6
GGA3-220ENST00000613421 INTS4Q96HW7 963 aaKnown RBP15.99■□□□□ 0.15
GGA3-220ENST00000613421 LRRC2Q9BYS8 371 aa15.99■□□□□ 0.15
GGA3-220ENST00000613421 GCP02774 474 aa15.99■□□□□ 0.15
GGA3-220ENST00000613421 TOP1P11387 765 aaKnown RBP15.99■□□□□ 0.15
GGA3-220ENST00000613421 AK2P54819 239 aa15.99■□□□□ 0.15
GGA3-220ENST00000613421 ARHGAP29Q52LW3 1261 aa15.99■□□□□ 0.15
GGA3-220ENST00000613421 OTUD7AQ8TE49 926 aaPredicted RBP15.99■□□□□ 0.15
GGA3-220ENST00000613421 BABAM1Q9NWV8 329 aa15.99■□□□□ 0.15
GGA3-220ENST00000613421 CWC15Q9P013 229 aaKnown RBP15.99■□□□□ 0.15
GGA3-220ENST00000613421 ZSCAN12O43309 604 aa15.99■□□□□ 0.15
GGA3-220ENST00000613421 UQCRFS1P1P0C7P4 283 aa15.99■□□□□ 0.15
GGA3-220ENST00000613421 KLHL10Q6JEL2 608 aa15.99■□□□□ 0.15
GGA3-220ENST00000613421 ADAMTS2O95450 1211 aa15.98■□□□□ 0.15
GGA3-220ENST00000613421 RAB11FIP4Q86YS3 637 aa15.98■□□□□ 0.15
GGA3-220ENST00000613421 KLHL34Q8N239 644 aa15.98■□□□□ 0.15
GGA3-220ENST00000613421 NFATC2IPQ8NCF5 419 aa15.98■□□□□ 0.15
GGA3-220ENST00000613421 KIF18AQ8NI77 898 aa15.98■□□□□ 0.15
GGA3-220ENST00000613421 RNMTO43148 476 aaKnown RBP15.98■□□□□ 0.15
GGA3-220ENST00000613421 EIF5P55010 431 aaKnown RBP15.98■□□□□ 0.15
GGA3-220ENST00000613421 ODF2Q5BJF6 829 aa15.98■□□□□ 0.15
GGA3-220ENST00000613421 CATIPQ7Z7H3 387 aa15.98■□□□□ 0.15
GGA3-220ENST00000613421 CCDC144CPQ8IYA2 1237 aa15.98■□□□□ 0.15
GGA3-220ENST00000613421 SYNMO15061 1565 aa15.98■□□□□ 0.15
GGA3-220ENST00000613421 KLF18A0A0U1RQI7 1052 aa15.98■□□□□ 0.15
GGA3-220ENST00000613421 UBXN4Q92575 508 aa15.98■□□□□ 0.15
GGA3-220ENST00000613421 CDC5LQ99459 802 aaKnown RBP15.98■□□□□ 0.15
GGA3-220ENST00000613421 Q6ZUG5 572 aa15.98■□□□□ 0.15
GGA3-220ENST00000613421 BIN1O00499 593 aa15.98■□□□□ 0.15
GGA3-220ENST00000613421 NOM1Q5C9Z4 860 aaKnown RBP15.98■□□□□ 0.15
GGA3-220ENST00000613421 ZSCAN29Q8IWY8 852 aaPredicted RBP15.98■□□□□ 0.15
GGA3-220ENST00000613421 SEC63Q9UGP8 760 aaKnown RBP15.98■□□□□ 0.15
GGA3-220ENST00000613421 MFSD6Q6ZSS7 791 aa15.97■□□□□ 0.15
GGA3-220ENST00000613421 ANKIB1Q9P2G1 1089 aa15.97■□□□□ 0.15
GGA3-220ENST00000613421 MYO6Q9UM54 1294 aa15.97■□□□□ 0.15
GGA3-220ENST00000613421 GSDMDP57764 484 aa15.97■□□□□ 0.15
GGA3-220ENST00000613421 DNM1Q05193 864 aaKnown RBP15.97■□□□□ 0.15
GGA3-220ENST00000613421 ATP2B3Q16720 1220 aa15.97■□□□□ 0.15
GGA3-220ENST00000613421 CCDC181Q5TID7 509 aa15.97■□□□□ 0.15
GGA3-220ENST00000613421 TNNT1P13805 278 aa15.96■□□□□ 0.15
GGA3-220ENST00000613421 CREB3L3Q68CJ9 461 aa15.96■□□□□ 0.15
GGA3-220ENST00000613421 UBE2Q2Q8WVN8 375 aa15.96■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 48.7 ms