RNA–Protein interactions for RNA: ENST00000601981.5

UPF1-213, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 5

Gene UPF1, Length 556 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-213ENST00000601981 ZNF34Q8IZ26 560 aa12.74□□□□□ -0.37
UPF1-213ENST00000601981 CCDC136Q96JN2 1154 aa12.74□□□□□ -0.37
UPF1-213ENST00000601981 MYD88Q99836 296 aa12.74□□□□□ -0.37
UPF1-213ENST00000601981 API5Q9BZZ5 524 aaKnown RBP12.74□□□□□ -0.37
UPF1-213ENST00000601981 PXDNLA1KZ92 1463 aa12.73□□□□□ -0.37
UPF1-213ENST00000601981 HSP90B1P14625 803 aaKnown RBP12.73□□□□□ -0.37
UPF1-213ENST00000601981 CCDC191Q8NCU4 936 aa12.73□□□□□ -0.37
UPF1-213ENST00000601981 UTP14AQ9BVJ6 771 aaKnown RBP12.73□□□□□ -0.37
UPF1-213ENST00000601981 CD2APQ9Y5K6 639 aa12.73□□□□□ -0.37
UPF1-213ENST00000601981 MYH3P11055 1940 aa12.72□□□□□ -0.37
UPF1-213ENST00000601981 C10orf71Q711Q0 1435 aa12.72□□□□□ -0.37
UPF1-213ENST00000601981 LAMB2P55268 1798 aa12.72□□□□□ -0.37
UPF1-213ENST00000601981 UBN2Q6ZU65 1347 aa12.72□□□□□ -0.37
UPF1-213ENST00000601981 FAM177BA6PVY3 158 aa12.72□□□□□ -0.37
UPF1-213ENST00000601981 MS4A1P11836 297 aa12.72□□□□□ -0.37
UPF1-213ENST00000601981 TRIM28Q13263 835 aaKnown RBP12.72□□□□□ -0.37
UPF1-213ENST00000601981 NLRP10Q86W26 655 aa12.72□□□□□ -0.37
UPF1-213ENST00000601981 LINS1Q8NG48 757 aa12.72□□□□□ -0.37
UPF1-213ENST00000601981 ARHGAP45Q92619 1136 aa12.72□□□□□ -0.37
UPF1-213ENST00000601981 FRAT1Q92837 279 aaPredicted RBP12.72□□□□□ -0.37
UPF1-213ENST00000601981 ISCA1Q9BUE6 129 aa12.72□□□□□ -0.37
UPF1-213ENST00000601981 CWC25Q9NXE8 425 aaPredicted RBP12.72□□□□□ -0.37
UPF1-213ENST00000601981 NOB1Q9ULX3 412 aaKnown RBP12.72□□□□□ -0.37
UPF1-213ENST00000601981 PDZRN3Q9UPQ7 1066 aa12.72□□□□□ -0.37
UPF1-213ENST00000601981 SH3TC1Q8TE82 1336 aa12.71□□□□□ -0.37
UPF1-213ENST00000601981 ATP5J2-PTCD1G3V325 749 aa12.71□□□□□ -0.37
UPF1-213ENST00000601981 ZKSCAN2Q63HK3 967 aa12.71□□□□□ -0.37
UPF1-213ENST00000601981 PRR5LQ6MZQ0 368 aa12.71□□□□□ -0.37
UPF1-213ENST00000601981 SLC4A10Q6U841 1118 aa12.71□□□□□ -0.37
UPF1-213ENST00000601981 TRMT112Q9UI30 125 aaKnown RBP12.71□□□□□ -0.37
UPF1-213ENST00000601981 ANKRD31Q8N7Z5 1873 aa12.71□□□□□ -0.37
UPF1-213ENST00000601981 UTRNP46939 3433 aa12.71□□□□□ -0.38
UPF1-213ENST00000601981 PDE6BP35913 854 aa12.7□□□□□ -0.38
UPF1-213ENST00000601981 AAMPQ13685 434 aa12.7□□□□□ -0.38
UPF1-213ENST00000601981 SUSD4Q5VX71 490 aa12.7□□□□□ -0.38
UPF1-213ENST00000601981 BRIP1Q9BX63 1249 aa12.7□□□□□ -0.38
UPF1-213ENST00000601981 FHDC1Q9C0D6 1143 aaPredicted RBP12.7□□□□□ -0.38
UPF1-213ENST00000601981 SRCIN1Q9C0H9 1055 aa12.7□□□□□ -0.38
UPF1-213ENST00000601981 DLEC1Q9Y238 1755 aa12.7□□□□□ -0.38
UPF1-213ENST00000601981 RIC1Q4ADV7 1423 aa12.7□□□□□ -0.38
UPF1-213ENST00000601981 NEURL1BA8MQ27 555 aa12.69□□□□□ -0.38
UPF1-213ENST00000601981 F6X3S4 739 aa12.69□□□□□ -0.38
UPF1-213ENST00000601981 ALDH1L1O75891 902 aa12.69□□□□□ -0.38
UPF1-213ENST00000601981 NTSR2O95665 410 aa12.69□□□□□ -0.38
UPF1-213ENST00000601981 CCT4P50991 539 aaKnown RBP12.69□□□□□ -0.38
UPF1-213ENST00000601981 TGFB2P61812 414 aa12.69□□□□□ -0.38
UPF1-213ENST00000601981 FTSJ3Q8IY81 847 aaKnown RBP12.69□□□□□ -0.38
UPF1-213ENST00000601981 DDX60Q8IY21 1712 aaKnown RBP12.68□□□□□ -0.38
UPF1-213ENST00000601981 CACNA1SQ13698 1873 aa12.68□□□□□ -0.38
UPF1-213ENST00000601981 BEND3Q5T5X7 828 aa12.68□□□□□ -0.38
UPF1-213ENST00000601981 ATF7IPQ6VMQ6 1270 aa12.68□□□□□ -0.38
UPF1-213ENST00000601981 NUTM1Q86Y26 1132 aa12.68□□□□□ -0.38
UPF1-213ENST00000601981 ZBTB38Q8NAP3 1195 aaPredicted RBP12.68□□□□□ -0.38
UPF1-213ENST00000601981 H0YIN7 160 aa12.67□□□□□ -0.38
UPF1-213ENST00000601981 PCCAP05165 728 aaPredicted RBP12.67□□□□□ -0.38
UPF1-213ENST00000601981 IGKV5-2P06315 115 aa12.67□□□□□ -0.38
UPF1-213ENST00000601981 GCKRQ14397 625 aa12.67□□□□□ -0.38
UPF1-213ENST00000601981 CWF19L2Q2TBE0 894 aaKnown RBP12.67□□□□□ -0.38
UPF1-213ENST00000601981 ERFEQ4G0M1 354 aa12.67□□□□□ -0.38
UPF1-213ENST00000601981 PANK1Q8TE04 598 aa12.67□□□□□ -0.38
UPF1-213ENST00000601981 NLRP3Q96P20 1036 aa12.67□□□□□ -0.38
UPF1-213ENST00000601981 SYT17Q9BSW7 474 aa12.67□□□□□ -0.38
UPF1-213ENST00000601981 C9orf78Q9NZ63 289 aaPredicted RBP12.67□□□□□ -0.38
UPF1-213ENST00000601981 BRCA1P38398 1863 aaKnown RBP12.67□□□□□ -0.38
UPF1-213ENST00000601981 KIAA1551Q9HCM1 1747 aa12.66□□□□□ -0.38
UPF1-213ENST00000601981 TRIM27P14373 513 aa12.66□□□□□ -0.38
UPF1-213ENST00000601981 DZIP1LQ8IYY4 767 aaKnown RBP12.66□□□□□ -0.38
UPF1-213ENST00000601981 FAM89AQ96GI7 184 aa12.66□□□□□ -0.38
UPF1-213ENST00000601981 HDAC5Q9UQL6 1122 aa12.66□□□□□ -0.38
UPF1-213ENST00000601981 TNRC6CQ9HCJ0 1690 aaKnown RBP12.66□□□□□ -0.38
UPF1-213ENST00000601981 ABCC12Q96J65 1359 aa12.66□□□□□ -0.38
UPF1-213ENST00000601981 COL11A2P13942 1736 aaPredicted RBP12.65□□□□□ -0.38
UPF1-213ENST00000601981 ABCC4O15439 1325 aa12.65□□□□□ -0.38
UPF1-213ENST00000601981 CDHR2Q9BYE9 1310 aa12.65□□□□□ -0.38
UPF1-213ENST00000601981 GRM8O00222 908 aa12.65□□□□□ -0.38
UPF1-213ENST00000601981 IRS4O14654 1257 aaPredicted RBP12.65□□□□□ -0.38
UPF1-213ENST00000601981 RLBP1P12271 317 aa12.65□□□□□ -0.38
UPF1-213ENST00000601981 RTL5Q5HYW3 569 aaPredicted RBP12.65□□□□□ -0.38
UPF1-213ENST00000601981 SLC10A5Q5PT55 438 aa12.65□□□□□ -0.38
UPF1-213ENST00000601981 C2CD5Q86YS7 1000 aa12.65□□□□□ -0.38
UPF1-213ENST00000601981 CCDC24Q8N4L8 307 aa12.65□□□□□ -0.38
UPF1-213ENST00000601981 RPGRQ92834 1020 aaKnown RBP12.65□□□□□ -0.38
UPF1-213ENST00000601981 COG6Q9Y2V7 657 aa12.65□□□□□ -0.38
UPF1-213ENST00000601981 ARFGEF1Q9Y6D6 1849 aa12.65□□□□□ -0.39
UPF1-213ENST00000601981 PDE8AO60658 829 aa12.64□□□□□ -0.39
UPF1-213ENST00000601981 MVPQ14764 893 aaKnown RBP12.64□□□□□ -0.39
UPF1-213ENST00000601981 UBE3BQ7Z3V4 1068 aa12.64□□□□□ -0.39
UPF1-213ENST00000601981 CLUAP1Q96AJ1 413 aa12.64□□□□□ -0.39
UPF1-213ENST00000601981 MASTLQ96GX5 879 aa12.64□□□□□ -0.39
UPF1-213ENST00000601981 H7C1W4 665 aa12.63□□□□□ -0.39
UPF1-213ENST00000601981 HCLS1P14317 486 aaPredicted RBP12.63□□□□□ -0.39
UPF1-213ENST00000601981 NPR1P16066 1061 aa12.63□□□□□ -0.39
UPF1-213ENST00000601981 INTS3Q68E01 1043 aaKnown RBP12.63□□□□□ -0.39
UPF1-213ENST00000601981 STYK1Q6J9G0 422 aa12.63□□□□□ -0.39
UPF1-213ENST00000601981 CNKSR1Q969H4 720 aa12.63□□□□□ -0.39
UPF1-213ENST00000601981 ZNF622Q969S3 477 aaKnown RBP eCLIP12.63□□□□□ -0.39
UPF1-213ENST00000601981 PIM2Q9P1W9 311 aa12.63□□□□□ -0.39
UPF1-213ENST00000601981 TNNQ9UQP3 1299 aa12.63□□□□□ -0.39
UPF1-213ENST00000601981 KDM2BQ8NHM5 1336 aa12.62□□□□□ -0.39
UPF1-213ENST00000601981 A0A0G2JLW4 131 aa12.62□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 76.5 ms