RNA–Protein interactions for RNA: ENST00000601357.6

SSBP4-209, Transcript of single stranded DNA binding protein 4, humanhuman

TSL 5

Gene SSBP4, Length 606 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSBP4-209ENST00000601357 SNED1Q8TER0 1413 aa29.49■■■□□ 2.31
SSBP4-209ENST00000601357 HOXA10P31260 410 aaPredicted RBP29.49■■■□□ 2.31
SSBP4-209ENST00000601357 WDR90Q96KV7 1748 aa29.48■■■□□ 2.31
SSBP4-209ENST00000601357 CALD1Q05682 793 aaKnown RBP29.48■■■□□ 2.31
SSBP4-209ENST00000601357 AIMP1Q12904 312 aaKnown RBP29.48■■■□□ 2.31
SSBP4-209ENST00000601357 DUSP27Q5VZP5 1158 aa29.48■■■□□ 2.31
SSBP4-209ENST00000601357 GNAI1P63096 354 aa29.47■■■□□ 2.31
SSBP4-209ENST00000601357 OLFM4Q6UX06 510 aa29.47■■■□□ 2.31
SSBP4-209ENST00000601357 DBF4Q9UBU7 674 aaPredicted RBP29.47■■■□□ 2.31
SSBP4-209ENST00000601357 RNF123Q5XPI4 1314 aa29.46■■■□□ 2.31
SSBP4-209ENST00000601357 HSP90AB3PQ58FF7 597 aa29.46■■■□□ 2.31
SSBP4-209ENST00000601357 SLC10A5Q5PT55 438 aa29.46■■■□□ 2.31
SSBP4-209ENST00000601357 C16orf71Q8IYS4 520 aaPredicted RBP29.46■■■□□ 2.31
SSBP4-209ENST00000601357 FKBP4Q02790 459 aaKnown RBP eCLIP29.45■■■□□ 2.31
SSBP4-209ENST00000601357 TCIRG1Q13488 830 aa29.45■■■□□ 2.31
SSBP4-209ENST00000601357 C3orf67Q6ZVT6 689 aa29.45■■■□□ 2.31
SSBP4-209ENST00000601357 NLRP10Q86W26 655 aa29.45■■■□□ 2.31
SSBP4-209ENST00000601357 RTKN2Q8IZC4 609 aa29.45■■■□□ 2.31
SSBP4-209ENST00000601357 UTP14AQ9BVJ6 771 aaKnown RBP29.45■■■□□ 2.31
SSBP4-209ENST00000601357 RPGRQ92834 1020 aaKnown RBP29.44■■■□□ 2.3
SSBP4-209ENST00000601357 LAMB2P55268 1798 aa29.44■■■□□ 2.3
SSBP4-209ENST00000601357 VEGFAP15692 232 aaPredicted RBP29.43■■■□□ 2.3
SSBP4-209ENST00000601357 DPY19L2Q6NUT2 758 aa29.43■■■□□ 2.3
SSBP4-209ENST00000601357 POTECB2RU33 542 aa29.42■■■□□ 2.3
SSBP4-209ENST00000601357 FSTL1Q12841 308 aa29.42■■■□□ 2.3
SSBP4-209ENST00000601357 PLBD2Q8NHP8 589 aa29.42■■■□□ 2.3
SSBP4-209ENST00000601357 CRAMP1Q96RY5 1269 aa29.42■■■□□ 2.3
SSBP4-209ENST00000601357 HYPKQ9NX55 129 aa29.41■■■□□ 2.3
SSBP4-209ENST00000601357 RBM17Q96I25 401 aaKnown RBP29.4■■■□□ 2.3
SSBP4-209ENST00000601357 NLRP3Q96P20 1036 aa29.4■■■□□ 2.3
SSBP4-209ENST00000601357 APLP1P51693 650 aa29.39■■■□□ 2.3
SSBP4-209ENST00000601357 CCDC27Q2M243 656 aa29.39■■■□□ 2.3
SSBP4-209ENST00000601357 ANKRD13DQ6ZTN6 518 aa29.39■■■□□ 2.3
SSBP4-209ENST00000601357 ZNF277Q9NRM2 450 aaPredicted RBP29.39■■■□□ 2.3
SSBP4-209ENST00000601357 ANP32CO43423 234 aa29.38■■■□□ 2.29
SSBP4-209ENST00000601357 CC2D2BQ6DHV5 1058 aa29.38■■■□□ 2.29
SSBP4-209ENST00000601357 PSMD1Q99460 953 aa29.38■■■□□ 2.29
SSBP4-209ENST00000601357 C8orf58Q8NAV2 365 aa29.37■■■□□ 2.29
SSBP4-209ENST00000601357 MRS2Q9HD23 443 aa29.37■■■□□ 2.29
SSBP4-209ENST00000601357 SYNE4Q8N205 404 aa29.36■■■□□ 2.29
SSBP4-209ENST00000601357 SMC1BQ8NDV3 1235 aa29.36■■■□□ 2.29
SSBP4-209ENST00000601357 ISCA1Q9BUE6 129 aa29.36■■■□□ 2.29
SSBP4-209ENST00000601357 TRMT112Q9UI30 125 aaKnown RBP29.36■■■□□ 2.29
SSBP4-209ENST00000601357 DDX60Q8IY21 1712 aaKnown RBP29.36■■■□□ 2.29
SSBP4-209ENST00000601357 ELL2O00472 640 aaPredicted RBP29.35■■■□□ 2.29
SSBP4-209ENST00000601357 DDNO94850 711 aaPredicted RBP29.35■■■□□ 2.29
SSBP4-209ENST00000601357 GRIPAP1Q4V328 841 aa29.35■■■□□ 2.29
SSBP4-209ENST00000601357 NCBP3Q53F19 620 aaKnown RBP29.35■■■□□ 2.29
SSBP4-209ENST00000601357 SH3TC1Q8TE82 1336 aa29.35■■■□□ 2.29
SSBP4-209ENST00000601357 PPEF1O14829 653 aaPredicted RBP29.34■■■□□ 2.29
SSBP4-209ENST00000601357 IARSP41252 1262 aaKnown RBP29.34■■■□□ 2.29
SSBP4-209ENST00000601357 SLC51AQ86UW1 340 aa29.34■■■□□ 2.29
SSBP4-209ENST00000601357 WWC1Q8IX03 1113 aa29.34■■■□□ 2.29
SSBP4-209ENST00000601357 HCLS1P14317 486 aaPredicted RBP29.33■■■□□ 2.29
SSBP4-209ENST00000601357 COL4A5P29400 1685 aa29.32■■■□□ 2.28
SSBP4-209ENST00000601357 ABCC4O15439 1325 aa29.32■■■□□ 2.28
SSBP4-209ENST00000601357 PHAXQ9H814 394 aaKnown RBP29.32■■■□□ 2.28
SSBP4-209ENST00000601357 ZNF541Q9H0D2 1346 aa29.31■■■□□ 2.28
SSBP4-209ENST00000601357 TRIM28Q13263 835 aaKnown RBP29.31■■■□□ 2.28
SSBP4-209ENST00000601357 L3MBTL3Q96JM7 780 aaPredicted RBP29.31■■■□□ 2.28
SSBP4-209ENST00000601357 SCN4AP35499 1836 aa29.31■■■□□ 2.28
SSBP4-209ENST00000601357 FZD9O00144 591 aa29.3■■■□□ 2.28
SSBP4-209ENST00000601357 TSPYL6Q8N831 410 aa29.3■■■□□ 2.28
SSBP4-209ENST00000601357 ATP6V0A2Q9Y487 856 aa29.3■■■□□ 2.28
SSBP4-209ENST00000601357 ATP5J2-PTCD1G3V325 749 aa29.29■■■□□ 2.28
SSBP4-209ENST00000601357 DNAJC5GQ8N7S2 189 aa29.29■■■□□ 2.28
SSBP4-209ENST00000601357 TSR2Q969E8 191 aaKnown RBP29.29■■■□□ 2.28
SSBP4-209ENST00000601357 IL16Q14005 1332 aa29.28■■■□□ 2.28
SSBP4-209ENST00000601357 TCERG1O14776 1098 aaKnown RBP29.27■■■□□ 2.28
SSBP4-209ENST00000601357 GOLGA2Q08379 1002 aa29.27■■■□□ 2.28
SSBP4-209ENST00000601357 CCDC30Q5VVM6 783 aa29.27■■■□□ 2.28
SSBP4-209ENST00000601357 ZNF428Q96B54 188 aa29.27■■■□□ 2.28
SSBP4-209ENST00000601357 CHMP4AQ9BY43 222 aa29.27■■■□□ 2.28
SSBP4-209ENST00000601357 TAF1P21675 1872 aa29.27■■■□□ 2.28
SSBP4-209ENST00000601357 BBOX1O75936 387 aa29.26■■■□□ 2.27
SSBP4-209ENST00000601357 RIC3Q7Z5B4 369 aa29.26■■■□□ 2.27
SSBP4-209ENST00000601357 FAM89AQ96GI7 184 aa29.26■■■□□ 2.27
SSBP4-209ENST00000601357 LRRC37AA6NMS7 1700 aa29.25■■■□□ 2.27
SSBP4-209ENST00000601357 IQCA1LA6NCM1 817 aa29.24■■■□□ 2.27
SSBP4-209ENST00000601357 DDX46Q7L014 1031 aaKnown RBP29.24■■■□□ 2.27
SSBP4-209ENST00000601357 GRAPQ13588 217 aa29.23■■■□□ 2.27
SSBP4-209ENST00000601357 SP8Q8IXZ3 490 aa29.23■■■□□ 2.27
SSBP4-209ENST00000601357 GRAPLQ8TC17 118 aaPredicted RBP29.23■■■□□ 2.27
SSBP4-209ENST00000601357 JDP2Q8WYK2 163 aa29.23■■■□□ 2.27
SSBP4-209ENST00000601357 SF3B3Q15393 1217 aaKnown RBP29.22■■■□□ 2.27
SSBP4-209ENST00000601357 RTFDC1Q9BY42 306 aaPredicted RBP29.22■■■□□ 2.27
SSBP4-209ENST00000601357 POTEIP0CG38 1075 aa29.21■■■□□ 2.27
SSBP4-209ENST00000601357 POTEJP0CG39 1038 aa29.21■■■□□ 2.27
SSBP4-209ENST00000601357 HTRA3P83110 453 aa29.21■■■□□ 2.27
SSBP4-209ENST00000601357 GPC2Q8N158 579 aa29.21■■■□□ 2.27
SSBP4-209ENST00000601357 TMX4Q9H1E5 349 aaPredicted RBP29.21■■■□□ 2.27
SSBP4-209ENST00000601357 VPS33BQ9H267 617 aa29.21■■■□□ 2.27
SSBP4-209ENST00000601357 TAF1DQ9H5J8 278 aaPredicted RBP29.21■■■□□ 2.27
SSBP4-209ENST00000601357 LARGE2Q8N3Y3 721 aa29.2■■■□□ 2.26
SSBP4-209ENST00000601357 COL4A1P02462 1669 aa29.2■■■□□ 2.26
SSBP4-209ENST00000601357 ADAMTSL1Q8N6G6 1762 aa29.19■■■□□ 2.26
SSBP4-209ENST00000601357 TWISTNBQ3B726 338 aaPredicted RBP29.19■■■□□ 2.26
SSBP4-209ENST00000601357 ZBTB38Q8NAP3 1195 aaPredicted RBP29.19■■■□□ 2.26
SSBP4-209ENST00000601357 MYD88Q99836 296 aa29.19■■■□□ 2.26
SSBP4-209ENST00000601357 DUOX1Q9NRD9 1551 aa29.18■■■□□ 2.26
Retrieved 100 of 20,778 RNA–protein pairs in 13.1 ms