RNA–Protein interactions for RNA: ENST00000600628.2

SSBP4-208, Transcript of single stranded DNA binding protein 4, human

TSL 3

Gene SSBP4, Length 550 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SSBP4-208	ENST00000600628	TTLL6	Q8N841	843 aa		11.37	□□□□□ -0.59
SSBP4-208	ENST00000600628	PHAX	Q9H814	394 aa	Known RBP	11.37	□□□□□ -0.59
SSBP4-208	ENST00000600628	PRELP	P51888	382 aa		11.36	□□□□□ -0.59
SSBP4-208	ENST00000600628	ERFE	Q4G0M1	354 aa		11.36	□□□□□ -0.59
SSBP4-208	ENST00000600628	MASTL	Q96GX5	879 aa		11.36	□□□□□ -0.59
SSBP4-208	ENST00000600628	CEP350	Q5VT06	3117 aa		11.35	□□□□□ -0.59
SSBP4-208	ENST00000600628	NPR1	P16066	1061 aa		11.35	□□□□□ -0.59
SSBP4-208	ENST00000600628	GPT	P24298	496 aa		11.35	□□□□□ -0.59
SSBP4-208	ENST00000600628	EXOSC9	Q06265	439 aa	Known RBP	11.35	□□□□□ -0.59
SSBP4-208	ENST00000600628	DIEXF	Q68CQ4	756 aa	Known RBP	11.35	□□□□□ -0.59
SSBP4-208	ENST00000600628	C3orf67	Q6ZVT6	689 aa		11.35	□□□□□ -0.59
SSBP4-208	ENST00000600628	PPP1R42	Q7Z4L9	355 aa		11.35	□□□□□ -0.59
SSBP4-208	ENST00000600628	MIER1	Q8N108	512 aa		11.35	□□□□□ -0.59
SSBP4-208	ENST00000600628	LTBP3	Q9NS15	1303 aa		11.35	□□□□□ -0.59
SSBP4-208	ENST00000600628	NFKBIE	O00221	500 aa		11.34	□□□□□ -0.59
SSBP4-208	ENST00000600628	NPHP1	O15259	732 aa		11.34	□□□□□ -0.59
SSBP4-208	ENST00000600628	GOLGA2	Q08379	1002 aa		11.34	□□□□□ -0.59
SSBP4-208	ENST00000600628	AIMP1	Q12904	312 aa	Known RBP	11.34	□□□□□ -0.59
SSBP4-208	ENST00000600628	NUTM1	Q86Y26	1132 aa		11.34	□□□□□ -0.59
SSBP4-208	ENST00000600628	SYNE4	Q8N205	404 aa		11.34	□□□□□ -0.59
SSBP4-208	ENST00000600628	CNKSR1	Q969H4	720 aa		11.34	□□□□□ -0.59
SSBP4-208	ENST00000600628	UTP14A	Q9BVJ6	771 aa	Known RBP	11.34	□□□□□ -0.59
SSBP4-208	ENST00000600628	LRRC37A	A6NMS7	1700 aa		11.33	□□□□□ -0.6
SSBP4-208	ENST00000600628	SLFN5	Q08AF3	891 aa		11.33	□□□□□ -0.6
SSBP4-208	ENST00000600628	PRPF40B	Q6NWY9	871 aa	Known RBP	11.33	□□□□□ -0.6
SSBP4-208	ENST00000600628	G2E3	Q7L622	706 aa		11.33	□□□□□ -0.6
SSBP4-208	ENST00000600628	ZNF622	Q969S3	477 aa	Known RBP eCLIP	11.33	□□□□□ -0.6
SSBP4-208	ENST00000600628	METTL22	Q9BUU2	404 aa	Predicted RBP	11.33	□□□□□ -0.6
SSBP4-208	ENST00000600628	MYH16	Q9H6N6	1097 aa		11.33	□□□□□ -0.6
SSBP4-208	ENST00000600628	SALL2	Q9Y467	1007 aa	Predicted RBP	11.33	□□□□□ -0.6
SSBP4-208	ENST00000600628	TAF1	P21675	1872 aa		11.33	□□□□□ -0.6
SSBP4-208	ENST00000600628	IGKV5-2	P06315	115 aa		11.32	□□□□□ -0.6
SSBP4-208	ENST00000600628	KSR2	Q6VAB6	950 aa		11.32	□□□□□ -0.6
SSBP4-208	ENST00000600628	CRAMP1	Q96RY5	1269 aa		11.32	□□□□□ -0.6
SSBP4-208	ENST00000600628	MYH3	P11055	1940 aa		11.32	□□□□□ -0.6
SSBP4-208	ENST00000600628	COL4A1	P02462	1669 aa		11.32	□□□□□ -0.6
SSBP4-208	ENST00000600628	SH3TC1	Q8TE82	1336 aa		11.32	□□□□□ -0.6
SSBP4-208	ENST00000600628	ZC3H4	Q9UPT8	1303 aa	Known RBP	11.32	□□□□□ -0.6
SSBP4-208	ENST00000600628	FAM177B	A6PVY3	158 aa		11.31	□□□□□ -0.6
SSBP4-208	ENST00000600628		E9PSI1	815 aa		11.31	□□□□□ -0.6
SSBP4-208	ENST00000600628	SLC4A2	P04920	1241 aa		11.31	□□□□□ -0.6
SSBP4-208	ENST00000600628	C9orf131	Q5VYM1	1079 aa		11.31	□□□□□ -0.6
SSBP4-208	ENST00000600628	CCDC191	Q8NCU4	936 aa		11.31	□□□□□ -0.6
SSBP4-208	ENST00000600628	GPBP1L1	Q9HC44	474 aa	Predicted RBP	11.31	□□□□□ -0.6
SSBP4-208	ENST00000600628	LTBP1	Q14766	1721 aa		11.31	□□□□□ -0.6
SSBP4-208	ENST00000600628	TIAM2	Q8IVF5	1701 aa		11.31	□□□□□ -0.6
SSBP4-208	ENST00000600628	PI4KAP2	A4QPH2	592 aa		11.3	□□□□□ -0.6
SSBP4-208	ENST00000600628	ATP5J2-PTCD1	G3V325	749 aa		11.3	□□□□□ -0.6
SSBP4-208	ENST00000600628	GTF2E1	P29083	439 aa	Predicted RBP	11.3	□□□□□ -0.6
SSBP4-208	ENST00000600628	ALDH1B1	P30837	517 aa		11.3	□□□□□ -0.6
SSBP4-208	ENST00000600628	FLII	Q13045	1269 aa		11.3	□□□□□ -0.6
SSBP4-208	ENST00000600628	SF3B3	Q15393	1217 aa	Known RBP	11.3	□□□□□ -0.6
SSBP4-208	ENST00000600628	PI4KAP1	Q8N8J0	262 aa		11.3	□□□□□ -0.6
SSBP4-208	ENST00000600628	ZBTB38	Q8NAP3	1195 aa	Predicted RBP	11.3	□□□□□ -0.6
SSBP4-208	ENST00000600628	STK31	Q9BXU1	1019 aa		11.3	□□□□□ -0.6
SSBP4-208	ENST00000600628	TRMT112	Q9UI30	125 aa	Known RBP	11.3	□□□□□ -0.6
SSBP4-208	ENST00000600628	C21orf2	O43822	256 aa		11.29	□□□□□ -0.6
SSBP4-208	ENST00000600628	DDX58	O95786	925 aa	Known RBP	11.29	□□□□□ -0.6
SSBP4-208	ENST00000600628	PCCA	P05165	728 aa	Predicted RBP	11.29	□□□□□ -0.6
SSBP4-208	ENST00000600628	CASP7	P55210	303 aa		11.29	□□□□□ -0.6
SSBP4-208	ENST00000600628	SOGA3	Q5TF21	947 aa		11.29	□□□□□ -0.6
SSBP4-208	ENST00000600628	RIC3	Q7Z5B4	369 aa		11.29	□□□□□ -0.6
SSBP4-208	ENST00000600628	ZNF526	Q8TF50	670 aa	Predicted RBP	11.29	□□□□□ -0.6
SSBP4-208	ENST00000600628	ZNF428	Q96B54	188 aa		11.29	□□□□□ -0.6
SSBP4-208	ENST00000600628	CDCA7L	Q96GN5	454 aa		11.29	□□□□□ -0.6
SSBP4-208	ENST00000600628	NLRP3	Q96P20	1036 aa		11.29	□□□□□ -0.6
SSBP4-208	ENST00000600628	MAP3K2	Q9Y2U5	619 aa		11.29	□□□□□ -0.6
SSBP4-208	ENST00000600628	CDHR2	Q9BYE9	1310 aa		11.29	□□□□□ -0.6
SSBP4-208	ENST00000600628	HCLS1	P14317	486 aa	Predicted RBP	11.28	□□□□□ -0.6
SSBP4-208	ENST00000600628	LMNB1	P20700	586 aa		11.28	□□□□□ -0.6
SSBP4-208	ENST00000600628	BRPF1	P55201	1214 aa	Predicted RBP	11.28	□□□□□ -0.6
SSBP4-208	ENST00000600628	C1QTNF8	P60827	252 aa		11.28	□□□□□ -0.6
SSBP4-208	ENST00000600628	RASSF7	Q02833	373 aa		11.28	□□□□□ -0.6
SSBP4-208	ENST00000600628	CC2D2B	Q6DHV5	1058 aa		11.28	□□□□□ -0.6
SSBP4-208	ENST00000600628	FAM89A	Q96GI7	184 aa		11.28	□□□□□ -0.6
SSBP4-208	ENST00000600628	RNF181	Q9P0P0	153 aa		11.28	□□□□□ -0.6
SSBP4-208	ENST00000600628	DUOX1	Q9NRD9	1551 aa		11.28	□□□□□ -0.6
SSBP4-208	ENST00000600628	COL4A5	P29400	1685 aa		11.27	□□□□□ -0.6
SSBP4-208	ENST00000600628	NEURL1B	A8MQ27	555 aa		11.27	□□□□□ -0.61
SSBP4-208	ENST00000600628	TCERG1	O14776	1098 aa	Known RBP	11.27	□□□□□ -0.61
SSBP4-208	ENST00000600628	CT47B1	P0C2W7	299 aa	Predicted RBP	11.27	□□□□□ -0.61
SSBP4-208	ENST00000600628	GRIPAP1	Q4V328	841 aa		11.27	□□□□□ -0.61
SSBP4-208	ENST00000600628	OLFM4	Q6UX06	510 aa		11.27	□□□□□ -0.61
SSBP4-208	ENST00000600628	SLC51A	Q86UW1	340 aa		11.27	□□□□□ -0.61
SSBP4-208	ENST00000600628	PSMD1	Q99460	953 aa		11.27	□□□□□ -0.61
SSBP4-208	ENST00000600628	MYD88	Q99836	296 aa		11.27	□□□□□ -0.61
SSBP4-208	ENST00000600628	CWC25	Q9NXE8	425 aa	Predicted RBP	11.27	□□□□□ -0.61
SSBP4-208	ENST00000600628	ZNF219	Q9P2Y4	722 aa	Predicted RBP	11.27	□□□□□ -0.61
SSBP4-208	ENST00000600628	ABCC4	O15439	1325 aa		11.27	□□□□□ -0.61
SSBP4-208	ENST00000600628	RTL9	Q8NET4	1388 aa		11.27	□□□□□ -0.61
SSBP4-208	ENST00000600628	WDR90	Q96KV7	1748 aa		11.26	□□□□□ -0.61
SSBP4-208	ENST00000600628		H7C1W4	665 aa		11.26	□□□□□ -0.61
SSBP4-208	ENST00000600628	BBOX1	O75936	387 aa		11.26	□□□□□ -0.61
SSBP4-208	ENST00000600628	CCDC93	Q567U6	631 aa		11.26	□□□□□ -0.61
SSBP4-208	ENST00000600628	RTKN2	Q8IZC4	609 aa		11.26	□□□□□ -0.61
SSBP4-208	ENST00000600628	MRPL50	Q8N5N7	158 aa	Known RBP	11.26	□□□□□ -0.61
SSBP4-208	ENST00000600628	LINS1	Q8NG48	757 aa		11.26	□□□□□ -0.61
SSBP4-208	ENST00000600628	DNAAF4	Q8WXU2	420 aa		11.26	□□□□□ -0.61
SSBP4-208	ENST00000600628	RBM17	Q96I25	401 aa	Known RBP	11.26	□□□□□ -0.61
SSBP4-208	ENST00000600628	PLA2G12B	Q9BX93	195 aa		11.26	□□□□□ -0.61

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