RNA–Protein interactions for RNA: ENST00000598355.1

TRIM28-213, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 714 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-213ENST00000598355 NUTM1Q86Y26 1132 aa20.81■□□□□ 0.92
TRIM28-213ENST00000598355 MASTLQ96GX5 879 aa20.81■□□□□ 0.92
TRIM28-213ENST00000598355 MYH16Q9H6N6 1097 aa20.81■□□□□ 0.92
TRIM28-213ENST00000598355 TIAM2Q8IVF5 1701 aa20.81■□□□□ 0.92
TRIM28-213ENST00000598355 FAM177BA6PVY3 158 aa20.8■□□□□ 0.92
TRIM28-213ENST00000598355 GOLGA2Q08379 1002 aa20.8■□□□□ 0.92
TRIM28-213ENST00000598355 VAMP4O75379 141 aa20.79■□□□□ 0.92
TRIM28-213ENST00000598355 NPR1P16066 1061 aa20.79■□□□□ 0.92
TRIM28-213ENST00000598355 EXOSC9Q06265 439 aaKnown RBP20.79■□□□□ 0.92
TRIM28-213ENST00000598355 TRIM28Q13263 835 aaKnown RBP20.79■□□□□ 0.92
TRIM28-213ENST00000598355 ZNF784Q8NCA9 323 aaPredicted RBP20.79■□□□□ 0.92
TRIM28-213ENST00000598355 CNKSR1Q969H4 720 aa20.79■□□□□ 0.92
TRIM28-213ENST00000598355 SNED1Q8TER0 1413 aa20.78■□□□□ 0.92
TRIM28-213ENST00000598355 SLC10A5Q5PT55 438 aa20.78■□□□□ 0.92
TRIM28-213ENST00000598355 MIER1Q8N108 512 aa20.78■□□□□ 0.92
TRIM28-213ENST00000598355 UTP14AQ9BVJ6 771 aaKnown RBP20.78■□□□□ 0.92
TRIM28-213ENST00000598355 MYH3P11055 1940 aa20.77■□□□□ 0.92
TRIM28-213ENST00000598355 PRPF40BQ6NWY9 871 aaKnown RBP20.77■□□□□ 0.92
TRIM28-213ENST00000598355 ZNF622Q969S3 477 aaKnown RBP eCLIP20.77■□□□□ 0.92
TRIM28-213ENST00000598355 STK31Q9BXU1 1019 aa20.77■□□□□ 0.92
TRIM28-213ENST00000598355 GTF2E1P29083 439 aaPredicted RBP20.76■□□□□ 0.91
TRIM28-213ENST00000598355 ARHGAP27Q6ZUM4 889 aa20.76■□□□□ 0.91
TRIM28-213ENST00000598355 C7orf43Q8WVR3 580 aa20.76■□□□□ 0.91
TRIM28-213ENST00000598355 LRRC37AA6NMS7 1700 aa20.75■□□□□ 0.91
TRIM28-213ENST00000598355 HOXA10P31260 410 aaPredicted RBP20.75■□□□□ 0.91
TRIM28-213ENST00000598355 TAF1P21675 1872 aa20.75■□□□□ 0.91
TRIM28-213ENST00000598355 SH3TC1Q8TE82 1336 aa20.75■□□□□ 0.91
TRIM28-213ENST00000598355 LTBP3Q9NS15 1303 aa20.75■□□□□ 0.91
TRIM28-213ENST00000598355 E9PSI1 815 aa20.74■□□□□ 0.91
TRIM28-213ENST00000598355 NFKBIEO00221 500 aa20.74■□□□□ 0.91
TRIM28-213ENST00000598355 C3orf67Q6ZVT6 689 aa20.74■□□□□ 0.91
TRIM28-213ENST00000598355 RIC3Q7Z5B4 369 aa20.74■□□□□ 0.91
TRIM28-213ENST00000598355 DDX58O95786 925 aaKnown RBP20.73■□□□□ 0.91
TRIM28-213ENST00000598355 G2E3Q7L622 706 aa20.73■□□□□ 0.91
TRIM28-213ENST00000598355 METTL22Q9BUU2 404 aaPredicted RBP20.73■□□□□ 0.91
TRIM28-213ENST00000598355 ATP5J2-PTCD1G3V325 749 aa20.72■□□□□ 0.91
TRIM28-213ENST00000598355 SLC4A2P04920 1241 aa20.72■□□□□ 0.91
TRIM28-213ENST00000598355 PRELPP51888 382 aa20.72■□□□□ 0.91
TRIM28-213ENST00000598355 RASSF7Q02833 373 aa20.72■□□□□ 0.91
TRIM28-213ENST00000598355 SLFN5Q08AF3 891 aa20.72■□□□□ 0.91
TRIM28-213ENST00000598355 KSR2Q6VAB6 950 aa20.72■□□□□ 0.91
TRIM28-213ENST00000598355 TRMT2AQ8IZ69 625 aaKnown RBP20.72■□□□□ 0.91
TRIM28-213ENST00000598355 TRMT112Q9UI30 125 aaKnown RBP20.72■□□□□ 0.91
TRIM28-213ENST00000598355 TCERG1O14776 1098 aaKnown RBP20.71■□□□□ 0.91
TRIM28-213ENST00000598355 C21orf2O43822 256 aa20.71■□□□□ 0.91
TRIM28-213ENST00000598355 FLIIQ13045 1269 aa20.71■□□□□ 0.91
TRIM28-213ENST00000598355 SOGA3Q5TF21 947 aa20.71■□□□□ 0.91
TRIM28-213ENST00000598355 SYNE4Q8N205 404 aa20.71■□□□□ 0.91
TRIM28-213ENST00000598355 CRAMP1Q96RY5 1269 aa20.71■□□□□ 0.91
TRIM28-213ENST00000598355 PI4KAP2A4QPH2 592 aa20.7■□□□□ 0.9
TRIM28-213ENST00000598355 ALDH1B1P30837 517 aa20.7■□□□□ 0.9
TRIM28-213ENST00000598355 PI4KAP1Q8N8J0 262 aa20.7■□□□□ 0.9
TRIM28-213ENST00000598355 CCDC191Q8NCU4 936 aa20.7■□□□□ 0.9
TRIM28-213ENST00000598355 NLRP3Q96P20 1036 aa20.7■□□□□ 0.9
TRIM28-213ENST00000598355 MAP3K2Q9Y2U5 619 aa20.7■□□□□ 0.9
TRIM28-213ENST00000598355 ZC3H4Q9UPT8 1303 aaKnown RBP20.7■□□□□ 0.9
TRIM28-213ENST00000598355 COL4A1P02462 1669 aa20.7■□□□□ 0.9
TRIM28-213ENST00000598355 C9orf131Q5VYM1 1079 aa20.69■□□□□ 0.9
TRIM28-213ENST00000598355 MYD88Q99836 296 aa20.69■□□□□ 0.9
TRIM28-213ENST00000598355 IGKV5-2P06315 115 aa20.68■□□□□ 0.9
TRIM28-213ENST00000598355 HCLS1P14317 486 aaPredicted RBP20.68■□□□□ 0.9
TRIM28-213ENST00000598355 LMNB1P20700 586 aa20.68■□□□□ 0.9
TRIM28-213ENST00000598355 ZBTB38Q8NAP3 1195 aaPredicted RBP20.68■□□□□ 0.9
TRIM28-213ENST00000598355 RPGRQ92834 1020 aaKnown RBP20.68■□□□□ 0.9
TRIM28-213ENST00000598355 LTBP1Q14766 1721 aa20.67■□□□□ 0.9
TRIM28-213ENST00000598355 PCCAP05165 728 aaPredicted RBP20.67■□□□□ 0.9
TRIM28-213ENST00000598355 CCDC93Q567U6 631 aa20.67■□□□□ 0.9
TRIM28-213ENST00000598355 FAM89AQ96GI7 184 aa20.67■□□□□ 0.9
TRIM28-213ENST00000598355 CDCA7LQ96GN5 454 aa20.67■□□□□ 0.9
TRIM28-213ENST00000598355 RBM17Q96I25 401 aaKnown RBP20.66■□□□□ 0.9
TRIM28-213ENST00000598355 CWC25Q9NXE8 425 aaPredicted RBP20.66■□□□□ 0.9
TRIM28-213ENST00000598355 RNF181Q9P0P0 153 aa20.66■□□□□ 0.9
TRIM28-213ENST00000598355 ABCC4O15439 1325 aa20.66■□□□□ 0.9
TRIM28-213ENST00000598355 CDHR2Q9BYE9 1310 aa20.65■□□□□ 0.9
TRIM28-213ENST00000598355 SF3B3Q15393 1217 aaKnown RBP20.65■□□□□ 0.9
TRIM28-213ENST00000598355 ZNF428Q96B54 188 aa20.65■□□□□ 0.9
TRIM28-213ENST00000598355 TAOK3Q9H2K8 898 aa20.65■□□□□ 0.9
TRIM28-213ENST00000598355 NEURL1BA8MQ27 555 aa20.64■□□□□ 0.89
TRIM28-213ENST00000598355 FKBP5Q13451 457 aaPredicted RBP20.64■□□□□ 0.89
TRIM28-213ENST00000598355 DNAAF4Q8WXU2 420 aa20.64■□□□□ 0.89
TRIM28-213ENST00000598355 ZNF219Q9P2Y4 722 aaPredicted RBP20.64■□□□□ 0.89
TRIM28-213ENST00000598355 DUOX1Q9NRD9 1551 aa20.63■□□□□ 0.89
TRIM28-213ENST00000598355 IRS4O14654 1257 aaPredicted RBP20.63■□□□□ 0.89
TRIM28-213ENST00000598355 NEXNQ0ZGT2 675 aa20.63■□□□□ 0.89
TRIM28-213ENST00000598355 CC2D2BQ6DHV5 1058 aa20.63■□□□□ 0.89
TRIM28-213ENST00000598355 OLFM4Q6UX06 510 aa20.63■□□□□ 0.89
TRIM28-213ENST00000598355 WDR90Q96KV7 1748 aa20.62■□□□□ 0.89
TRIM28-213ENST00000598355 PPEF1O14829 653 aaPredicted RBP20.62■□□□□ 0.89
TRIM28-213ENST00000598355 FKBP4Q02790 459 aaKnown RBP eCLIP20.62■□□□□ 0.89
TRIM28-213ENST00000598355 RTKN2Q8IZC4 609 aa20.62■□□□□ 0.89
TRIM28-213ENST00000598355 PSMD1Q99460 953 aa20.62■□□□□ 0.89
TRIM28-213ENST00000598355 CT47B1P0C2W7 299 aaPredicted RBP20.61■□□□□ 0.89
TRIM28-213ENST00000598355 CWF19L2Q2TBE0 894 aaKnown RBP20.61■□□□□ 0.89
TRIM28-213ENST00000598355 GRIPAP1Q4V328 841 aa20.61■□□□□ 0.89
TRIM28-213ENST00000598355 SLC51AQ86UW1 340 aa20.61■□□□□ 0.89
TRIM28-213ENST00000598355 LINS1Q8NG48 757 aa20.61■□□□□ 0.89
TRIM28-213ENST00000598355 SPEF2Q9C093 1822 aa20.61■□□□□ 0.89
TRIM28-213ENST00000598355 COL4A5P29400 1685 aa20.61■□□□□ 0.89
TRIM28-213ENST00000598355 HSP90B1P14625 803 aaKnown RBP20.6■□□□□ 0.89
TRIM28-213ENST00000598355 GRAPQ13588 217 aa20.6■□□□□ 0.89
Retrieved 100 of 20,778 RNA–protein pairs in 48.4 ms