RNA–Protein interactions for RNA: ENST00000596842.5

UPF1-204, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 2

Gene UPF1, Length 3,825 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-204ENST00000596842 BICC1Q9H694 974 aaKnown RBP18.14■□□□□ 0.49
UPF1-204ENST00000596842 ADAMTS13Q76LX8 1427 aa18.14■□□□□ 0.49
UPF1-204ENST00000596842 KDRP35968 1356 aa18.14■□□□□ 0.49
UPF1-204ENST00000596842 SPDYE4A6NLX3 237 aa18.14■□□□□ 0.49
UPF1-204ENST00000596842 AP5Z1O43299 807 aa18.14■□□□□ 0.49
UPF1-204ENST00000596842 PIBF1Q8WXW3 757 aa18.14■□□□□ 0.49
UPF1-204ENST00000596842 TNMDQ9H2S6 317 aa18.14■□□□□ 0.49
UPF1-204ENST00000596842 DBF4Q9UBU7 674 aaPredicted RBP18.14■□□□□ 0.49
UPF1-204ENST00000596842 C3P01024 1663 aa18.14■□□□□ 0.49
UPF1-204ENST00000596842 A0A0D9SFI3 127 aa18.14■□□□□ 0.49
UPF1-204ENST00000596842 ZNF592Q92610 1267 aa18.14■□□□□ 0.49
UPF1-204ENST00000596842 SPATA32Q96LK8 384 aa18.14■□□□□ 0.49
UPF1-204ENST00000596842 CCDC171Q6TFL3 1326 aa18.14■□□□□ 0.49
UPF1-204ENST00000596842 LETM1O95202 739 aaPredicted RBP18.13■□□□□ 0.49
UPF1-204ENST00000596842 H3BQV1 296 aa18.13■□□□□ 0.49
UPF1-204ENST00000596842 PTGS1P23219 599 aa18.13■□□□□ 0.49
UPF1-204ENST00000596842 IFFO2Q5TF58 517 aa18.13■□□□□ 0.49
UPF1-204ENST00000596842 SUCLG2Q96I99 432 aa18.13■□□□□ 0.49
UPF1-204ENST00000596842 PTPRUQ92729 1446 aa18.13■□□□□ 0.49
UPF1-204ENST00000596842 LARP1Q6PKG0 1096 aaKnown RBP18.13■□□□□ 0.49
UPF1-204ENST00000596842 AOX1Q06278 1338 aa18.13■□□□□ 0.49
UPF1-204ENST00000596842 MAP3K11Q16584 847 aa18.12■□□□□ 0.49
UPF1-204ENST00000596842 UVSSAQ2YD98 709 aa18.12■□□□□ 0.49
UPF1-204ENST00000596842 VPS53Q5VIR6 699 aa18.12■□□□□ 0.49
UPF1-204ENST00000596842 CCDC129Q6ZRS4 1044 aa18.12■□□□□ 0.49
UPF1-204ENST00000596842 EVI5LQ96CN4 794 aa18.12■□□□□ 0.49
UPF1-204ENST00000596842 MON2Q7Z3U7 1717 aa18.12■□□□□ 0.49
UPF1-204ENST00000596842 NRXN3Q9Y4C0 1643 aa18.12■□□□□ 0.49
UPF1-204ENST00000596842 PHF8Q9UPP1 1060 aa18.12■□□□□ 0.49
UPF1-204ENST00000596842 A0A087WWV3 80 aa18.11■□□□□ 0.49
UPF1-204ENST00000596842 JAK2O60674 1132 aa18.11■□□□□ 0.49
UPF1-204ENST00000596842 C16orf45Q96MC5 204 aaPredicted RBP18.11■□□□□ 0.49
UPF1-204ENST00000596842 MAP7D2Q96T17 732 aa18.11■□□□□ 0.49
UPF1-204ENST00000596842 SPATA31D1Q6ZQQ2 1576 aa18.11■□□□□ 0.49
UPF1-204ENST00000596842 SLC27A2O14975 620 aa18.11■□□□□ 0.49
UPF1-204ENST00000596842 TERF1P54274 439 aa18.11■□□□□ 0.49
UPF1-204ENST00000596842 LRMPQ12912 555 aa18.11■□□□□ 0.49
UPF1-204ENST00000596842 ANO6Q4KMQ2 910 aa18.11■□□□□ 0.49
UPF1-204ENST00000596842 PLEKHO1Q53GL0 409 aaPredicted RBP18.11■□□□□ 0.49
UPF1-204ENST00000596842 ZSCAN31Q96LW9 406 aaPredicted RBP18.11■□□□□ 0.49
UPF1-204ENST00000596842 KIF3AQ9Y496 699 aa18.11■□□□□ 0.49
UPF1-204ENST00000596842 SH2B1Q9NRF2 756 aaPredicted RBP18.1■□□□□ 0.49
UPF1-204ENST00000596842 GUCY1B3Q02153 619 aa18.1■□□□□ 0.49
UPF1-204ENST00000596842 ZNF589Q86UQ0 364 aaPredicted RBP18.1■□□□□ 0.49
UPF1-204ENST00000596842 TTC41PQ6P2S7 1318 aa18.1■□□□□ 0.49
UPF1-204ENST00000596842 GOLGA6L6A8MZA4 724 aa18.1■□□□□ 0.49
UPF1-204ENST00000596842 TNNT3P45378 269 aaPredicted RBP18.1■□□□□ 0.49
UPF1-204ENST00000596842 ST3GAL1Q11201 340 aa18.1■□□□□ 0.49
UPF1-204ENST00000596842 RNF20Q5VTR2 975 aa18.1■□□□□ 0.49
UPF1-204ENST00000596842 CCDC186Q7Z3E2 898 aa18.1■□□□□ 0.49
UPF1-204ENST00000596842 MYRIPQ8NFW9 859 aa18.09■□□□□ 0.49
UPF1-204ENST00000596842 ZSWIM6Q9HCJ5 1215 aa18.09■□□□□ 0.49
UPF1-204ENST00000596842 NRBP1Q9UHY1 535 aa18.09■□□□□ 0.49
UPF1-204ENST00000596842 GRM8O00222 908 aa18.09■□□□□ 0.49
UPF1-204ENST00000596842 SASH1O94885 1247 aa18.09■□□□□ 0.49
UPF1-204ENST00000596842 PSMA5P28066 241 aa18.09■□□□□ 0.49
UPF1-204ENST00000596842 ZC3H6P61129 1189 aaKnown RBP18.09■□□□□ 0.49
UPF1-204ENST00000596842 TYRO3Q06418 890 aa18.09■□□□□ 0.49
UPF1-204ENST00000596842 SIPA1L2Q9P2F8 1722 aaPredicted RBP18.09■□□□□ 0.49
UPF1-204ENST00000596842 TECPR2O15040 1411 aa18.09■□□□□ 0.49
UPF1-204ENST00000596842 KSR2Q6VAB6 950 aa18.09■□□□□ 0.49
UPF1-204ENST00000596842 SEC62Q99442 399 aaKnown RBP18.09■□□□□ 0.49
UPF1-204ENST00000596842 MYD88Q99836 296 aa18.09■□□□□ 0.49
UPF1-204ENST00000596842 DNAJC25Q9H1X3 360 aa18.08■□□□□ 0.49
UPF1-204ENST00000596842 ADCY9O60503 1353 aa18.08■□□□□ 0.49
UPF1-204ENST00000596842 ATP5J2-PTCD1G3V325 749 aa18.08■□□□□ 0.48
UPF1-204ENST00000596842 PTCD1O75127 700 aaKnown RBP18.08■□□□□ 0.48
UPF1-204ENST00000596842 ERC1Q8IUD2 1116 aa18.08■□□□□ 0.48
UPF1-204ENST00000596842 ERCC4Q92889 916 aaPredicted RBP18.08■□□□□ 0.48
UPF1-204ENST00000596842 SLFNL1Q499Z3 407 aa18.08■□□□□ 0.48
UPF1-204ENST00000596842 PPP4R3BQ5MIZ7 849 aa18.08■□□□□ 0.48
UPF1-204ENST00000596842 DDX46Q7L014 1031 aaKnown RBP18.08■□□□□ 0.48
UPF1-204ENST00000596842 NEUROD6Q96NK8 337 aa18.08■□□□□ 0.48
UPF1-204ENST00000596842 NECTIN1Q15223 517 aa18.07■□□□□ 0.48
UPF1-204ENST00000596842 NEXNQ0ZGT2 675 aa18.07■□□□□ 0.48
UPF1-204ENST00000596842 HMGN5P82970 282 aaKnown RBP18.07■□□□□ 0.48
UPF1-204ENST00000596842 TMEM87AQ8NBN3 555 aa18.07■□□□□ 0.48
UPF1-204ENST00000596842 IP6K1Q92551 441 aa18.06■□□□□ 0.48
UPF1-204ENST00000596842 KCNF1Q9H3M0 494 aa18.06■□□□□ 0.48
UPF1-204ENST00000596842 NRKQ7Z2Y5 1582 aa18.06■□□□□ 0.48
UPF1-204ENST00000596842 DDX58O95786 925 aaKnown RBP18.06■□□□□ 0.48
UPF1-204ENST00000596842 CCT2P78371 535 aaKnown RBP18.06■□□□□ 0.48
UPF1-204ENST00000596842 SETD1AO15047 1707 aaKnown RBP18.06■□□□□ 0.48
UPF1-204ENST00000596842 RIOK3O14730 519 aaKnown RBP18.06■□□□□ 0.48
UPF1-204ENST00000596842 CHST3Q7LGC8 479 aa18.06■□□□□ 0.48
UPF1-204ENST00000596842 ZNF330Q9Y3S2 320 aaPredicted RBP18.06■□□□□ 0.48
UPF1-204ENST00000596842 GIGYF1O75420 1035 aaPredicted RBP18.05■□□□□ 0.48
UPF1-204ENST00000596842 NR1I2O75469 434 aa18.05■□□□□ 0.48
UPF1-204ENST00000596842 FAM200AQ8TCP9 573 aa18.05■□□□□ 0.48
UPF1-204ENST00000596842 FTOQ9C0B1 505 aaKnown RBP eCLIP18.05■□□□□ 0.48
UPF1-204ENST00000596842 RNMTO43148 476 aaKnown RBP18.05■□□□□ 0.48
UPF1-204ENST00000596842 PDCP20941 246 aa18.05■□□□□ 0.48
UPF1-204ENST00000596842 THEMISQ8N1K5 641 aaPredicted RBP18.05■□□□□ 0.48
UPF1-204ENST00000596842 BRF1Q92994 677 aa18.05■□□□□ 0.48
UPF1-204ENST00000596842 NLRP2Q9NX02 1062 aa18.05■□□□□ 0.48
UPF1-204ENST00000596842 AKAP4Q5JQC9 854 aa18.04■□□□□ 0.48
UPF1-204ENST00000596842 CBX8Q9HC52 389 aa18.04■□□□□ 0.48
UPF1-204ENST00000596842 TBX22Q9Y458 520 aa18.04■□□□□ 0.48
UPF1-204ENST00000596842 PLEKHG1Q9ULL1 1385 aa18.04■□□□□ 0.48
UPF1-204ENST00000596842 AKAP12Q02952 1782 aa18.04■□□□□ 0.48
Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms