RNA–Protein interactions for RNA: ENST00000594806.5

TRIM28-204, Transcript of tripartite motif containing 28, humanhuman

TSL 5

Gene TRIM28, Length 861 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-204ENST00000594806 KLRG2A4D1S0 409 aaPredicted RBP32.9■■■□□ 2.86
TRIM28-204ENST00000594806 GRIN3BO60391 1043 aa32.9■■■□□ 2.86
TRIM28-204ENST00000594806 CHRNA5P30532 468 aa32.9■■■□□ 2.86
TRIM28-204ENST00000594806 CCDC24Q8N4L8 307 aa32.9■■■□□ 2.86
TRIM28-204ENST00000594806 ADCY9O60503 1353 aa32.89■■■□□ 2.86
TRIM28-204ENST00000594806 NEXNQ0ZGT2 675 aa32.89■■■□□ 2.86
TRIM28-204ENST00000594806 PELP1Q8IZL8 1130 aaKnown RBP32.89■■■□□ 2.86
TRIM28-204ENST00000594806 ATP5J2-PTCD1G3V325 749 aa32.88■■■□□ 2.85
TRIM28-204ENST00000594806 ERFEQ4G0M1 354 aa32.88■■■□□ 2.85
TRIM28-204ENST00000594806 SLC10A5Q5PT55 438 aa32.88■■■□□ 2.85
TRIM28-204ENST00000594806 NUTM1Q86Y26 1132 aa32.88■■■□□ 2.85
TRIM28-204ENST00000594806 CCDC191Q8NCU4 936 aa32.88■■■□□ 2.85
TRIM28-204ENST00000594806 MYD88Q99836 296 aa32.88■■■□□ 2.85
TRIM28-204ENST00000594806 TRMT112Q9UI30 125 aaKnown RBP32.88■■■□□ 2.85
TRIM28-204ENST00000594806 SH3TC1Q8TE82 1336 aa32.86■■■□□ 2.85
TRIM28-204ENST00000594806 DALRD3Q5D0E6 543 aaKnown RBP32.86■■■□□ 2.85
TRIM28-204ENST00000594806 SRGNP10124 158 aa32.85■■■□□ 2.85
TRIM28-204ENST00000594806 YBX3P16989 372 aaKnown RBP eCLIP32.85■■■□□ 2.856e-20■□□□□ 9.2
TRIM28-204ENST00000594806 STYK1Q6J9G0 422 aa32.85■■■□□ 2.85
TRIM28-204ENST00000594806 MRPL50Q8N5N7 158 aaKnown RBP32.85■■■□□ 2.85
TRIM28-204ENST00000594806 DNAAF4Q8WXU2 420 aa32.85■■■□□ 2.85
TRIM28-204ENST00000594806 SSH1Q8WYL5 1049 aa32.85■■■□□ 2.85
TRIM28-204ENST00000594806 MASTLQ96GX5 879 aa32.85■■■□□ 2.85
TRIM28-204ENST00000594806 ABCC12Q96J65 1359 aa32.83■■■□□ 2.85
TRIM28-204ENST00000594806 TTLL6Q8N841 843 aa32.83■■■□□ 2.85
TRIM28-204ENST00000594806 CNKSR1Q969H4 720 aa32.83■■■□□ 2.85
TRIM28-204ENST00000594806 CWC25Q9NXE8 425 aaPredicted RBP32.83■■■□□ 2.85
TRIM28-204ENST00000594806 BCS1LQ9Y276 419 aa32.83■■■□□ 2.85
TRIM28-204ENST00000594806 ARFGEF1Q9Y6D6 1849 aa32.83■■■□□ 2.85
TRIM28-204ENST00000594806 HSP90B1P14625 803 aaKnown RBP32.82■■■□□ 2.84
TRIM28-204ENST00000594806 NPR1P16066 1061 aa32.82■■■□□ 2.84
TRIM28-204ENST00000594806 NLRP3Q96P20 1036 aa32.82■■■□□ 2.84
TRIM28-204ENST00000594806 PTPRCP08575 1304 aa32.81■■■□□ 2.84
TRIM28-204ENST00000594806 COL11A2P13942 1736 aaPredicted RBP32.81■■■□□ 2.84
TRIM28-204ENST00000594806 BRPF1P55201 1214 aaPredicted RBP32.81■■■□□ 2.84
TRIM28-204ENST00000594806 CRY2Q49AN0 593 aa32.81■■■□□ 2.84
TRIM28-204ENST00000594806 ZBTB38Q8NAP3 1195 aaPredicted RBP32.81■■■□□ 2.84
TRIM28-204ENST00000594806 ZNF622Q969S3 477 aaKnown RBP eCLIP32.81■■■□□ 2.84
TRIM28-204ENST00000594806 LINS1Q8NG48 757 aa32.79■■■□□ 2.84
TRIM28-204ENST00000594806 SMC4Q9NTJ3 1288 aa32.79■■■□□ 2.84
TRIM28-204ENST00000594806 PCCAP05165 728 aaPredicted RBP32.78■■■□□ 2.84
TRIM28-204ENST00000594806 IGKV5-2P06315 115 aa32.78■■■□□ 2.84
TRIM28-204ENST00000594806 WWC3Q9ULE0 1092 aa32.78■■■□□ 2.84
TRIM28-204ENST00000594806 ALDH1B1P30837 517 aa32.77■■■□□ 2.84
TRIM28-204ENST00000594806 TNRC6CQ9HCJ0 1690 aaKnown RBP32.77■■■□□ 2.84
TRIM28-204ENST00000594806 NEURL1BA8MQ27 555 aa32.76■■■□□ 2.83
TRIM28-204ENST00000594806 RARSP54136 660 aaKnown RBP32.76■■■□□ 2.83
TRIM28-204ENST00000594806 FAM89AQ96GI7 184 aa32.76■■■□□ 2.83
TRIM28-204ENST00000594806 CHD4Q14839 1912 aa32.76■■■□□ 2.83
TRIM28-204ENST00000594806 RPGRQ92834 1020 aaKnown RBP32.75■■■□□ 2.83
TRIM28-204ENST00000594806 HOXA10P31260 410 aaPredicted RBP32.74■■■□□ 2.83
TRIM28-204ENST00000594806 F6X3S4 739 aa32.73■■■□□ 2.83
TRIM28-204ENST00000594806 HCLS1P14317 486 aaPredicted RBP32.73■■■□□ 2.83
TRIM28-204ENST00000594806 CWF19L2Q2TBE0 894 aaKnown RBP32.73■■■□□ 2.83
TRIM28-204ENST00000594806 SYNE4Q8N205 404 aa32.73■■■□□ 2.83
TRIM28-204ENST00000594806 BCL2L13Q9BXK5 485 aa32.73■■■□□ 2.83
TRIM28-204ENST00000594806 IRS4O14654 1257 aaPredicted RBP32.72■■■□□ 2.83
TRIM28-204ENST00000594806 RBM17Q96I25 401 aaKnown RBP32.72■■■□□ 2.83
TRIM28-204ENST00000594806 CDHR2Q9BYE9 1310 aa32.72■■■□□ 2.83
TRIM28-204ENST00000594806 DDX60Q8IY21 1712 aaKnown RBP32.71■■■□□ 2.83
TRIM28-204ENST00000594806 LAMB2P55268 1798 aa32.71■■■□□ 2.83
TRIM28-204ENST00000594806 GCKRQ14397 625 aa32.71■■■□□ 2.83
TRIM28-204ENST00000594806 BEND3Q5T5X7 828 aa32.71■■■□□ 2.83
TRIM28-204ENST00000594806 CRAMP1Q96RY5 1269 aa32.71■■■□□ 2.83
TRIM28-204ENST00000594806 PRPF40BQ6NWY9 871 aaKnown RBP32.7■■■□□ 2.83
TRIM28-204ENST00000594806 ALDH1L1O75891 902 aa32.69■■■□□ 2.82
TRIM28-204ENST00000594806 SF3B3Q15393 1217 aaKnown RBP32.69■■■□□ 2.82
TRIM28-204ENST00000594806 SOGA3Q5TF21 947 aa32.69■■■□□ 2.82
TRIM28-204ENST00000594806 SLX4Q8IY92 1834 aa32.69■■■□□ 2.82
TRIM28-204ENST00000594806 KIF16BQ96L93 1317 aa32.69■■■□□ 2.82
TRIM28-204ENST00000594806 H7C1W4 665 aa32.68■■■□□ 2.82
TRIM28-204ENST00000594806 CACNA1SQ13698 1873 aa32.67■■■□□ 2.82
TRIM28-204ENST00000594806 PDE8AO60658 829 aa32.67■■■□□ 2.82
TRIM28-204ENST00000594806 RTL5Q5HYW3 569 aaPredicted RBP32.67■■■□□ 2.82
TRIM28-204ENST00000594806 SLC4A10Q6U841 1118 aa32.67■■■□□ 2.82
TRIM28-204ENST00000594806 C3orf67Q6ZVT6 689 aa32.67■■■□□ 2.82
TRIM28-204ENST00000594806 ARHGAP45Q92619 1136 aa32.67■■■□□ 2.82
TRIM28-204ENST00000594806 ARHGAP27Q6ZUM4 889 aa32.66■■■□□ 2.82
TRIM28-204ENST00000594806 API5Q9BZZ5 524 aaKnown RBP32.66■■■□□ 2.82
TRIM28-204ENST00000594806 SRCIN1Q9C0H9 1055 aa32.66■■■□□ 2.82
TRIM28-204ENST00000594806 DDX46Q7L014 1031 aaKnown RBP32.65■■■□□ 2.82
TRIM28-204ENST00000594806 NOB1Q9ULX3 412 aaKnown RBP32.65■■■□□ 2.82
TRIM28-204ENST00000594806 IPO8O15397 1037 aaKnown RBP32.63■■■□□ 2.81
TRIM28-204ENST00000594806 GOLGB1Q14789 3259 aaKnown RBP32.62■■■□□ 2.81
TRIM28-204ENST00000594806 C21orf2O43822 256 aa32.62■■■□□ 2.81
TRIM28-204ENST00000594806 CC2D2BQ6DHV5 1058 aa32.62■■■□□ 2.81
TRIM28-204ENST00000594806 UBE3BQ7Z3V4 1068 aa32.62■■■□□ 2.81
TRIM28-204ENST00000594806 C7orf43Q8WVR3 580 aa32.62■■■□□ 2.81
TRIM28-204ENST00000594806 MYH3P11055 1940 aa32.61■■■□□ 2.81
TRIM28-204ENST00000594806 BBOX1O75936 387 aa32.61■■■□□ 2.81
TRIM28-204ENST00000594806 GRIPAP1Q4V328 841 aa32.61■■■□□ 2.81
TRIM28-204ENST00000594806 PLA2G12BQ9BX93 195 aa32.61■■■□□ 2.81
TRIM28-204ENST00000594806 CCDC152Q4G0S7 254 aa32.6■■■□□ 2.81
TRIM28-204ENST00000594806 CASP7P55210 303 aa32.59■■■□□ 2.81
TRIM28-204ENST00000594806 JARID2Q92833 1246 aaPredicted RBP32.59■■■□□ 2.81
TRIM28-204ENST00000594806 ABCC4O15439 1325 aa32.58■■■□□ 2.81
TRIM28-204ENST00000594806 GRM8O00222 908 aa32.58■■■□□ 2.81
TRIM28-204ENST00000594806 CCDC93Q567U6 631 aa32.58■■■□□ 2.81
TRIM28-204ENST00000594806 TMC4Q7Z404 712 aa32.58■■■□□ 2.81
TRIM28-204ENST00000594806 C9orf78Q9NZ63 289 aaPredicted RBP32.58■■■□□ 2.81
Retrieved 100 of 20,778 RNA–protein pairs in 58.9 ms