RNA–Protein interactions for RNA: ENST00000588857.5

ATG4D-209, Transcript of autophagy related 4D cysteine peptidase, humanhuman

TSL 1 (best)

Gene ATG4D, Length 1,555 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4D-209ENST00000588857 SPON1Q9HCB6 807 aa27.76■■■□□ 2.03
ATG4D-209ENST00000588857 CAMTA2O94983 1202 aa27.75■■■□□ 2.03
ATG4D-209ENST00000588857 LRP5O75197 1615 aa27.75■■■□□ 2.03
ATG4D-209ENST00000588857 H7C1W4 665 aa27.74■■■□□ 2.03
ATG4D-209ENST00000588857 SUCLG2Q96I99 432 aa27.74■■■□□ 2.03
ATG4D-209ENST00000588857 ZNF652Q9Y2D9 606 aa27.74■■■□□ 2.03
ATG4D-209ENST00000588857 DCTPP1Q9H773 170 aa27.73■■■□□ 2.03
ATG4D-209ENST00000588857 GPTP24298 496 aa27.73■■■□□ 2.03
ATG4D-209ENST00000588857 PPP1R42Q7Z4L9 355 aa27.73■■■□□ 2.03
ATG4D-209ENST00000588857 PNMA6EA0A0J9YXQ4 647 aa27.72■■■□□ 2.03
ATG4D-209ENST00000588857 JARID2Q92833 1246 aaPredicted RBP27.72■■■□□ 2.03
ATG4D-209ENST00000588857 TFCP2L1Q9NZI6 479 aa27.72■■■□□ 2.03
ATG4D-209ENST00000588857 PDZRN3Q9UPQ7 1066 aa27.72■■■□□ 2.03
ATG4D-209ENST00000588857 UBR3Q6ZT12 1888 aa27.71■■■□□ 2.03
ATG4D-209ENST00000588857 SCN7AQ01118 1682 aa27.71■■■□□ 2.03
ATG4D-209ENST00000588857 SRGAP3O43295 1099 aa27.71■■■□□ 2.03
ATG4D-209ENST00000588857 ZBTB7AO95365 584 aa27.71■■■□□ 2.03
ATG4D-209ENST00000588857 NLRP10Q86W26 655 aa27.71■■■□□ 2.03
ATG4D-209ENST00000588857 MTX1Q13505 466 aa27.7■■■□□ 2.03
ATG4D-209ENST00000588857 CLEC4GQ6UXB4 293 aa27.7■■■□□ 2.03
ATG4D-209ENST00000588857 ZNF34Q8IZ26 560 aa27.7■■■□□ 2.03
ATG4D-209ENST00000588857 SSH3Q8TE77 659 aa27.7■■■□□ 2.03
ATG4D-209ENST00000588857 KAZALD1Q96I82 304 aa27.7■■■□□ 2.03
ATG4D-209ENST00000588857 BICC1Q9H694 974 aaKnown RBP27.7■■■□□ 2.03
ATG4D-209ENST00000588857 RGL2O15211 777 aa27.69■■■□□ 2.02
ATG4D-209ENST00000588857 CASP7P55210 303 aa27.69■■■□□ 2.02
ATG4D-209ENST00000588857 NARFQ9UHQ1 456 aa27.69■■■□□ 2.02
ATG4D-209ENST00000588857 ZPR1O75312 459 aa27.69■■■□□ 2.02
ATG4D-209ENST00000588857 TRAPPC3LQ5T215 181 aa27.69■■■□□ 2.02
ATG4D-209ENST00000588857 C4AP0C0L4 1744 aa27.68■■■□□ 2.02
ATG4D-209ENST00000588857 PCCAP05165 728 aaPredicted RBP27.68■■■□□ 2.02
ATG4D-209ENST00000588857 RTL5Q5HYW3 569 aaPredicted RBP27.68■■■□□ 2.02
ATG4D-209ENST00000588857 SMIM5Q71RC9 77 aa27.68■■■□□ 2.02
ATG4D-209ENST00000588857 ZBTB38Q8NAP3 1195 aaPredicted RBP27.68■■■□□ 2.02
ATG4D-209ENST00000588857 PNPLA7Q6ZV29 1317 aa27.68■■■□□ 2.02
ATG4D-209ENST00000588857 PHF14O94880 888 aa27.67■■■□□ 2.02
ATG4D-209ENST00000588857 ADRA2BP18089 450 aa27.67■■■□□ 2.02
ATG4D-209ENST00000588857 NUCB1Q02818 461 aa27.67■■■□□ 2.02
ATG4D-209ENST00000588857 POLA2Q14181 598 aa27.67■■■□□ 2.02
ATG4D-209ENST00000588857 ANKRD45Q5TZF3 282 aa27.67■■■□□ 2.02
ATG4D-209ENST00000588857 SKAP1Q86WV1 359 aa27.67■■■□□ 2.02
ATG4D-209ENST00000588857 ARHGEF1Q92888 912 aaKnown RBP27.67■■■□□ 2.02
ATG4D-209ENST00000588857 MTFR1LQ9H019 292 aa27.67■■■□□ 2.02
ATG4D-209ENST00000588857 CASZ1Q86V15 1759 aa27.67■■■□□ 2.02
ATG4D-209ENST00000588857 RFC4P35249 363 aa27.66■■■□□ 2.02
ATG4D-209ENST00000588857 PARP10Q53GL7 1025 aa27.66■■■□□ 2.02
ATG4D-209ENST00000588857 ZBTB47Q9UFB7 747 aaPredicted RBP27.66■■■□□ 2.02
ATG4D-209ENST00000588857 ATF5Q9Y2D1 282 aaPredicted RBP27.66■■■□□ 2.02
ATG4D-209ENST00000588857 USPL1Q5W0Q7 1092 aa27.65■■■□□ 2.02
ATG4D-209ENST00000588857 NIP7Q9Y221 180 aaKnown RBP eCLIP27.65■■■□□ 2.02
ATG4D-209ENST00000588857 UBN2Q6ZU65 1347 aa27.65■■■□□ 2.02
ATG4D-209ENST00000588857 RGS3P49796 1198 aa27.65■■■□□ 2.02
ATG4D-209ENST00000588857 EPHA10Q5JZY3 1008 aa27.65■■■□□ 2.02
ATG4D-209ENST00000588857 AMIGO3Q86WK7 504 aa27.65■■■□□ 2.02
ATG4D-209ENST00000588857 FAM89AQ96GI7 184 aa27.65■■■□□ 2.02
ATG4D-209ENST00000588857 TRMT112Q9UI30 125 aaKnown RBP27.65■■■□□ 2.02
ATG4D-209ENST00000588857 CHD1LQ86WJ1 897 aa27.64■■■□□ 2.01
ATG4D-209ENST00000588857 SLC16A10Q8TF71 515 aa27.64■■■□□ 2.01
ATG4D-209ENST00000588857 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP27.63■■■□□ 2.01
ATG4D-209ENST00000588857 PTGER2P43116 358 aa27.63■■■□□ 2.01
ATG4D-209ENST00000588857 EXOC6BQ9Y2D4 811 aa27.63■■■□□ 2.01
ATG4D-209ENST00000588857 CDHR2Q9BYE9 1310 aa27.62■■■□□ 2.01
ATG4D-209ENST00000588857 SSFA2P28290 1259 aa27.62■■■□□ 2.01
ATG4D-209ENST00000588857 RABL6Q3YEC7 729 aaPredicted RBP27.62■■■□□ 2.01
ATG4D-209ENST00000588857 SRP68Q9UHB9 627 aaKnown RBP27.62■■■□□ 2.01
ATG4D-209ENST00000588857 MYH3P11055 1940 aa27.61■■■□□ 2.01
ATG4D-209ENST00000588857 APBB1O00213 710 aa27.61■■■□□ 2.01
ATG4D-209ENST00000588857 SURF6O75683 361 aaKnown RBP27.61■■■□□ 2.01
ATG4D-209ENST00000588857 FOXO4P98177 505 aa27.61■■■□□ 2.01
ATG4D-209ENST00000588857 UTP14AQ9BVJ6 771 aaKnown RBP27.61■■■□□ 2.01
ATG4D-209ENST00000588857 LNPKQ9C0E8 428 aa27.61■■■□□ 2.01
ATG4D-209ENST00000588857 PPP1R1BQ9UD71 204 aaPredicted RBP27.61■■■□□ 2.01
ATG4D-209ENST00000588857 USP42Q9H9J4 1324 aaKnown RBP27.61■■■□□ 2.01
ATG4D-209ENST00000588857 SUSD4Q5VX71 490 aa27.6■■■□□ 2.01
ATG4D-209ENST00000588857 HSP90AB4PQ58FF6 505 aa27.6■■■□□ 2.01
ATG4D-209ENST00000588857 LMBR1LQ6UX01 489 aa27.6■■■□□ 2.01
ATG4D-209ENST00000588857 COL23A1Q86Y22 540 aaPredicted RBP27.6■■■□□ 2.01
ATG4D-209ENST00000588857 BCL2L12Q9HB09 334 aa27.6■■■□□ 2.01
ATG4D-209ENST00000588857 FLAD1Q8NFF5 587 aa27.59■■■□□ 2.01
ATG4D-209ENST00000588857 SGIP1Q9BQI5 828 aa27.59■■■□□ 2.01
ATG4D-209ENST00000588857 FAM177BA6PVY3 158 aa27.58■■■□□ 2.01
ATG4D-209ENST00000588857 PLA2G12BQ9BX93 195 aa27.58■■■□□ 2.01
ATG4D-209ENST00000588857 CHMP3Q9Y3E7 222 aa27.58■■■□□ 2.01
ATG4D-209ENST00000588857 SH3TC1Q8TE82 1336 aa27.58■■■□□ 2
ATG4D-209ENST00000588857 IRS4O14654 1257 aaPredicted RBP27.57■■■□□ 2
ATG4D-209ENST00000588857 RAB11FIP3O75154 756 aa27.57■■■□□ 2
ATG4D-209ENST00000588857 TBC1D9BQ66K14 1250 aa27.56■■■□□ 2
ATG4D-209ENST00000588857 BICDL1Q6ZP65 573 aa27.56■■■□□ 2
ATG4D-209ENST00000588857 SETDB2Q96T68 719 aa27.56■■■□□ 2
ATG4D-209ENST00000588857 LRRCC1Q9C099 1032 aa27.56■■■□□ 2
ATG4D-209ENST00000588857 NOP58Q9Y2X3 529 aaKnown RBP27.56■■■□□ 2
ATG4D-209ENST00000588857 MSH5O43196 834 aa27.56■■■□□ 2
ATG4D-209ENST00000588857 HSP90B1P14625 803 aaKnown RBP27.56■■■□□ 2
ATG4D-209ENST00000588857 OS9Q13438 667 aaPredicted RBP27.56■■■□□ 2
ATG4D-209ENST00000588857 SYNE4Q8N205 404 aa27.56■■■□□ 2
ATG4D-209ENST00000588857 TUBGCP6Q96RT7 1819 aa27.55■■■□□ 2
ATG4D-209ENST00000588857 NTSR2O95665 410 aa27.54■■■□□ 2
ATG4D-209ENST00000588857 PDE4AP27815 886 aa27.54■■■□□ 2
ATG4D-209ENST00000588857 COL24A1Q17RW2 1714 aa27.54■■■□□ 2
ATG4D-209ENST00000588857 LAMB2P55268 1798 aa27.53■■■□□ 2
Retrieved 100 of 20,778 RNA–protein pairs in 89.1 ms