RNA–Protein interactions for RNA: ENST00000572334.6

VPS53-213, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 5

Gene VPS53, Length 561 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-213ENST00000572334 TMPOP42166 694 aaKnown RBP8.88□□□□□ -0.99
VPS53-213ENST00000572334 CHADLQ6NUI6 762 aa8.88□□□□□ -0.99
VPS53-213ENST00000572334 GIGYF2Q6Y7W6 1299 aaKnown RBP8.88□□□□□ -0.99
VPS53-213ENST00000572334 SYNE4Q8N205 404 aa8.88□□□□□ -0.99
VPS53-213ENST00000572334 TAF1DQ9H5J8 278 aaPredicted RBP8.88□□□□□ -0.99
VPS53-213ENST00000572334 COL4A1P02462 1669 aa8.88□□□□□ -0.99
VPS53-213ENST00000572334 TRPM7Q96QT4 1865 aa8.87□□□□□ -0.99
VPS53-213ENST00000572334 ITGBL1O95965 494 aaPredicted RBP8.87□□□□□ -0.99
VPS53-213ENST00000572334 ALDH1B1P30837 517 aa8.87□□□□□ -0.99
VPS53-213ENST00000572334 IARSP41252 1262 aaKnown RBP8.87□□□□□ -0.99
VPS53-213ENST00000572334 RIPK4P57078 832 aa8.87□□□□□ -0.99
VPS53-213ENST00000572334 RALBP1Q15311 655 aa8.87□□□□□ -0.99
VPS53-213ENST00000572334 KRT24Q2M2I5 525 aa8.87□□□□□ -0.99
VPS53-213ENST00000572334 RTKN2Q8IZC4 609 aa8.87□□□□□ -0.99
VPS53-213ENST00000572334 PSMD1Q99460 953 aa8.87□□□□□ -0.99
VPS53-213ENST00000572334 NYXQ9GZU5 481 aa8.87□□□□□ -0.99
VPS53-213ENST00000572334 TSPYL4Q9UJ04 414 aa8.87□□□□□ -0.99
VPS53-213ENST00000572334 TRIM35Q9UPQ4 493 aa8.87□□□□□ -0.99
VPS53-213ENST00000572334 MAPK8IP3Q9UPT6 1336 aa8.86□□□□□ -0.99
VPS53-213ENST00000572334 LRRC37AA6NMS7 1700 aa8.86□□□□□ -0.99
VPS53-213ENST00000572334 NEFMP07197 916 aa8.86□□□□□ -0.99
VPS53-213ENST00000572334 SLC10A5Q5PT55 438 aa8.86□□□□□ -0.99
VPS53-213ENST00000572334 KIF6Q6ZMV9 814 aa8.86□□□□□ -0.99
VPS53-213ENST00000572334 CRAMP1Q96RY5 1269 aa8.86□□□□□ -0.99
VPS53-213ENST00000572334 CREBZFQ9NS37 354 aa8.86□□□□□ -0.99
VPS53-213ENST00000572334 BABAM1Q9NWV8 329 aa8.86□□□□□ -0.99
VPS53-213ENST00000572334 POLR2AP24928 1970 aaKnown RBP8.86□□□□□ -0.99
VPS53-213ENST00000572334 RNF123Q5XPI4 1314 aa8.85□□□□□ -0.99
VPS53-213ENST00000572334 CHL1O00533 1208 aa8.85□□□□□ -0.99
VPS53-213ENST00000572334 HSPA1AP0DMV8 641 aaKnown RBP8.85□□□□□ -0.99
VPS53-213ENST00000572334 HSPA1BP0DMV9 641 aaKnown RBP8.85□□□□□ -0.99
VPS53-213ENST00000572334 EIF2S2P20042 333 aaKnown RBP8.85□□□□□ -0.99
VPS53-213ENST00000572334 GTF2E1P29083 439 aaPredicted RBP8.85□□□□□ -0.99
VPS53-213ENST00000572334 DDX10Q13206 875 aaKnown RBP8.85□□□□□ -0.99
VPS53-213ENST00000572334 LDHDQ86WU2 507 aa8.85□□□□□ -0.99
VPS53-213ENST00000572334 CCDC146Q8IYE0 955 aa8.85□□□□□ -0.99
VPS53-213ENST00000572334 PNNQ9H307 717 aaKnown RBP8.85□□□□□ -0.99
VPS53-213ENST00000572334 DUOX1Q9NRD9 1551 aa8.85□□□□□ -0.99
VPS53-213ENST00000572334 MYBBP1AQ9BQG0 1328 aaKnown RBP8.84□□□□□ -0.99
VPS53-213ENST00000572334 IQCA1LA6NCM1 817 aa8.84□□□□□ -0.99
VPS53-213ENST00000572334 EPHX2P34913 555 aa8.84□□□□□ -0.99
VPS53-213ENST00000572334 PARP10Q53GL7 1025 aa8.84□□□□□ -0.99
VPS53-213ENST00000572334 CC2D2BQ6DHV5 1058 aa8.84□□□□□ -0.99
VPS53-213ENST00000572334 NLRP10Q86W26 655 aa8.84□□□□□ -0.99
VPS53-213ENST00000572334 MKRN1Q9UHC7 482 aaKnown RBP8.84□□□□□ -0.99
VPS53-213ENST00000572334 HACL1Q9UJ83 578 aa8.84□□□□□ -0.99
VPS53-213ENST00000572334 CNTNAP1P78357 1384 aa8.84□□□□□ -0.99
VPS53-213ENST00000572334 ABCC4O15439 1325 aa8.83□□□□□ -1
VPS53-213ENST00000572334 PPEF1O14829 653 aaPredicted RBP8.83□□□□□ -1
VPS53-213ENST00000572334 SCNN1DP51172 638 aa8.83□□□□□ -1
VPS53-213ENST00000572334 COPS6Q7L5N1 327 aa8.83□□□□□ -1
VPS53-213ENST00000572334 PPP1R42Q7Z4L9 355 aa8.83□□□□□ -1
VPS53-213ENST00000572334 GPC2Q8N158 579 aa8.83□□□□□ -1
VPS53-213ENST00000572334 XAGE3Q8WTP9 111 aa8.83□□□□□ -1
VPS53-213ENST00000572334 NECTIN2Q92692 538 aa8.83□□□□□ -1
VPS53-213ENST00000572334 RPGRQ92834 1020 aaKnown RBP8.83□□□□□ -1
VPS53-213ENST00000572334 RBM17Q96I25 401 aaKnown RBP8.83□□□□□ -1
VPS53-213ENST00000572334 THSD7BQ9C0I4 1608 aa8.83□□□□□ -1
VPS53-213ENST00000572334 SCN9AQ15858 1988 aa8.82□□□□□ -1
VPS53-213ENST00000572334 TCERG1O14776 1098 aaKnown RBP8.82□□□□□ -1
VPS53-213ENST00000572334 HCLS1P14317 486 aaPredicted RBP8.82□□□□□ -1
VPS53-213ENST00000572334 FMR1Q06787 632 aaKnown RBP eCLIP8.82□□□□□ -18e-8■■■■■ 27.8
VPS53-213ENST00000572334 TCIRG1Q13488 830 aa8.82□□□□□ -1
VPS53-213ENST00000572334 NEUROD2Q15784 382 aa8.82□□□□□ -1
VPS53-213ENST00000572334 EAPPQ56P03 285 aaPredicted RBP8.82□□□□□ -1
VPS53-213ENST00000572334 MAP1SQ66K74 1059 aaPredicted RBP8.82□□□□□ -1
VPS53-213ENST00000572334 RUNDC1Q96C34 613 aa8.82□□□□□ -1
VPS53-213ENST00000572334 NLRP3Q96P20 1036 aa8.82□□□□□ -1
VPS53-213ENST00000572334 UTP14AQ9BVJ6 771 aaKnown RBP8.82□□□□□ -1
VPS53-213ENST00000572334 RTFDC1Q9BY42 306 aaPredicted RBP8.82□□□□□ -1
VPS53-213ENST00000572334 DDX21Q9NR30 783 aaKnown RBP eCLIP8.82□□□□□ -1
VPS53-213ENST00000572334 CHPF2Q9P2E5 772 aa8.82□□□□□ -1
VPS53-213ENST00000572334 ADAMTS8Q9UP79 889 aa8.82□□□□□ -1
VPS53-213ENST00000572334 ATP6V0A2Q9Y487 856 aa8.82□□□□□ -1
VPS53-213ENST00000572334 TMEM88BA6NKF7 163 aa8.81□□□□□ -1
VPS53-213ENST00000572334 ZNF853P0CG23 659 aa8.81□□□□□ -1
VPS53-213ENST00000572334 EPS15P42566 896 aa8.81□□□□□ -1
VPS53-213ENST00000572334 VEGFBP49765 207 aa8.81□□□□□ -1
VPS53-213ENST00000572334 LMOD3Q0VAK6 560 aa8.81□□□□□ -1
VPS53-213ENST00000572334 AIMP1Q12904 312 aaKnown RBP8.81□□□□□ -1
VPS53-213ENST00000572334 AOC3Q16853 763 aa8.81□□□□□ -1
VPS53-213ENST00000572334 GRIPAP1Q4V328 841 aa8.81□□□□□ -1
VPS53-213ENST00000572334 CNTROBQ8N137 903 aa8.81□□□□□ -1
VPS53-213ENST00000572334 JDP2Q8WYK2 163 aa8.81□□□□□ -1
VPS53-213ENST00000572334 ZNF428Q96B54 188 aa8.81□□□□□ -1
VPS53-213ENST00000572334 ISCA1Q9BUE6 129 aa8.81□□□□□ -1
VPS53-213ENST00000572334 PSME4Q14997 1843 aa8.8□□□□□ -1
VPS53-213ENST00000572334 FOXN1O15353 648 aa8.8□□□□□ -1
VPS53-213ENST00000572334 EIF6P56537 245 aaKnown RBP8.8□□□□□ -1
VPS53-213ENST00000572334 PNMA8AQ86V59 439 aaPredicted RBP8.8□□□□□ -1
VPS53-213ENST00000572334 SP8Q8IXZ3 490 aa8.8□□□□□ -1
VPS53-213ENST00000572334 LARGE2Q8N3Y3 721 aa8.8□□□□□ -1
VPS53-213ENST00000572334 PRKRIP1Q9H875 184 aaPredicted RBP8.8□□□□□ -1
VPS53-213ENST00000572334 GJA3Q9Y6H8 435 aa8.8□□□□□ -1
VPS53-213ENST00000572334 MYH3P11055 1940 aa8.8□□□□□ -1
VPS53-213ENST00000572334 RASSF10A6NK89 507 aa8.79□□□□□ -1
VPS53-213ENST00000572334 YDJCA8MPS7 323 aa8.79□□□□□ -1
VPS53-213ENST00000572334 PPIP5K2O43314 1243 aa8.79□□□□□ -1
VPS53-213ENST00000572334 HOXB7P09629 217 aa8.79□□□□□ -1
VPS53-213ENST00000572334 CXCL9Q07325 125 aa8.79□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 45.6 ms