RNA–Protein interactions for RNA: ENST00000566078.1

CTCF-203, Transcript of CCCTC-binding factor, humanhuman

TSL 2

Gene CTCF, Length 1,627 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTCF-203ENST00000566078 BICC1Q9H694 974 aaKnown RBP38.12■■■■□ 3.69
CTCF-203ENST00000566078 NARFQ9UHQ1 456 aa38.12■■■■□ 3.69
CTCF-203ENST00000566078 UBN2Q6ZU65 1347 aa38.12■■■■□ 3.69
CTCF-203ENST00000566078 RTL5Q5HYW3 569 aaPredicted RBP38.11■■■■□ 3.69
CTCF-203ENST00000566078 SKAP1Q86WV1 359 aa38.11■■■■□ 3.69
CTCF-203ENST00000566078 ARHGEF1Q92888 912 aaKnown RBP38.11■■■■□ 3.69
CTCF-203ENST00000566078 LAMB2P55268 1798 aa38.1■■■■□ 3.69
CTCF-203ENST00000566078 COL24A1Q17RW2 1714 aa38.1■■■■□ 3.69
CTCF-203ENST00000566078 DCTPP1Q9H773 170 aa38.1■■■■□ 3.69
CTCF-203ENST00000566078 SRGAP3O43295 1099 aa38.09■■■■□ 3.69
CTCF-203ENST00000566078 MTX1Q13505 466 aa38.09■■■■□ 3.69
CTCF-203ENST00000566078 TRAPPC3LQ5T215 181 aa38.09■■■■□ 3.69
CTCF-203ENST00000566078 CLEC4GQ6UXB4 293 aa38.09■■■■□ 3.69
CTCF-203ENST00000566078 SRP68Q9UHB9 627 aaKnown RBP38.09■■■■□ 3.69
CTCF-203ENST00000566078 PDZRN3Q9UPQ7 1066 aa38.09■■■■□ 3.69
CTCF-203ENST00000566078 RGL2O15211 777 aa38.09■■■■□ 3.69
CTCF-203ENST00000566078 ZPR1O75312 459 aa38.09■■■■□ 3.69
CTCF-203ENST00000566078 PCCAP05165 728 aaPredicted RBP38.09■■■■□ 3.69
CTCF-203ENST00000566078 ADRA2BP18089 450 aa38.09■■■■□ 3.69
CTCF-203ENST00000566078 USPL1Q5W0Q7 1092 aa38.09■■■■□ 3.69
CTCF-203ENST00000566078 PELP1Q8IZL8 1130 aaKnown RBP38.09■■■■□ 3.69
CTCF-203ENST00000566078 SSH3Q8TE77 659 aa38.09■■■■□ 3.69
CTCF-203ENST00000566078 EPHA10Q5JZY3 1008 aa38.08■■■■□ 3.69
CTCF-203ENST00000566078 POLA2Q14181 598 aa38.07■■■■□ 3.68
CTCF-203ENST00000566078 ZBTB38Q8NAP3 1195 aaPredicted RBP38.07■■■■□ 3.68
CTCF-203ENST00000566078 CASZ1Q86V15 1759 aa38.07■■■■□ 3.68
CTCF-203ENST00000566078 RFC4P35249 363 aa38.06■■■■□ 3.68
CTCF-203ENST00000566078 NIP7Q9Y221 180 aaKnown RBP eCLIP38.06■■■■□ 3.68
CTCF-203ENST00000566078 DDX60Q8IY21 1712 aaKnown RBP38.06■■■■□ 3.68
CTCF-203ENST00000566078 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP38.05■■■■□ 3.68
CTCF-203ENST00000566078 BCL2L12Q9HB09 334 aa38.05■■■■□ 3.68
CTCF-203ENST00000566078 USP42Q9H9J4 1324 aaKnown RBP38.05■■■■□ 3.68
CTCF-203ENST00000566078 SSFA2P28290 1259 aa38.05■■■■□ 3.68
CTCF-203ENST00000566078 PARP10Q53GL7 1025 aa38.05■■■■□ 3.68
CTCF-203ENST00000566078 FAM89AQ96GI7 184 aa38.05■■■■□ 3.68
CTCF-203ENST00000566078 SF3B2Q13435 895 aaKnown RBP38.03■■■■□ 3.68
CTCF-203ENST00000566078 TRMT112Q9UI30 125 aaKnown RBP38.03■■■■□ 3.68
CTCF-203ENST00000566078 EN1Q05925 392 aaPredicted RBP38.02■■■■□ 3.68
CTCF-203ENST00000566078 ZNF827Q17R98 1081 aa38.02■■■■□ 3.68
CTCF-203ENST00000566078 CDHR2Q9BYE9 1310 aa38.02■■■■□ 3.68
CTCF-203ENST00000566078 NUCB1Q02818 461 aa38.01■■■■□ 3.68
CTCF-203ENST00000566078 RABL6Q3YEC7 729 aaPredicted RBP38.01■■■■□ 3.68
CTCF-203ENST00000566078 SUSD4Q5VX71 490 aa38.01■■■■□ 3.68
CTCF-203ENST00000566078 EZH2Q15910 746 aaKnown RBP38.01■■■■□ 3.67
CTCF-203ENST00000566078 AKT1S1Q96B36 256 aa38.01■■■■□ 3.67
CTCF-203ENST00000566078 CAMKK2Q96RR4 588 aa38.01■■■■□ 3.67
CTCF-203ENST00000566078 FOXO4P98177 505 aa38■■■■□ 3.67
CTCF-203ENST00000566078 ANKRD45Q5TZF3 282 aa38■■■■□ 3.67
CTCF-203ENST00000566078 EXOC6BQ9Y2D4 811 aa38■■■■□ 3.67
CTCF-203ENST00000566078 QSER1Q2KHR3 1735 aa37.99■■■■□ 3.67
CTCF-203ENST00000566078 FAM177BA6PVY3 158 aa37.98■■■■□ 3.67
CTCF-203ENST00000566078 TBC1D9BQ66K14 1250 aa37.98■■■■□ 3.67
CTCF-203ENST00000566078 UTP14AQ9BVJ6 771 aaKnown RBP37.98■■■■□ 3.67
CTCF-203ENST00000566078 BAG6P46379 1132 aa37.98■■■■□ 3.67
CTCF-203ENST00000566078 RGS3P49796 1198 aa37.98■■■■□ 3.67
CTCF-203ENST00000566078 CHD1LQ86WJ1 897 aa37.97■■■■□ 3.67
CTCF-203ENST00000566078 SYNE4Q8N205 404 aa37.97■■■■□ 3.67
CTCF-203ENST00000566078 TFCP2L1Q9NZI6 479 aa37.97■■■■□ 3.67
CTCF-203ENST00000566078 APBB1O00213 710 aa37.96■■■■□ 3.67
CTCF-203ENST00000566078 LMBR1LQ6UX01 489 aa37.96■■■■□ 3.67
CTCF-203ENST00000566078 BICDL1Q6ZP65 573 aa37.96■■■■□ 3.67
CTCF-203ENST00000566078 PLA2G12BQ9BX93 195 aa37.96■■■■□ 3.67
CTCF-203ENST00000566078 NTSR2O95665 410 aa37.95■■■■□ 3.67
CTCF-203ENST00000566078 LNPKQ9C0E8 428 aa37.95■■■■□ 3.67
CTCF-203ENST00000566078 SH3TC1Q8TE82 1336 aa37.95■■■■□ 3.67
CTCF-203ENST00000566078 IRS4O14654 1257 aaPredicted RBP37.94■■■■□ 3.66
CTCF-203ENST00000566078 SURF6O75683 361 aaKnown RBP37.94■■■■□ 3.66
CTCF-203ENST00000566078 CHMP3Q9Y3E7 222 aa37.94■■■■□ 3.66
CTCF-203ENST00000566078 ZBTB47Q9UFB7 747 aaPredicted RBP37.92■■■■□ 3.66
CTCF-203ENST00000566078 SETDB2Q96T68 719 aa37.91■■■■□ 3.66
CTCF-203ENST00000566078 PA2G4Q9UQ80 394 aaKnown RBP37.91■■■■□ 3.66
CTCF-203ENST00000566078 PDE4AP27815 886 aa37.9■■■■□ 3.66
CTCF-203ENST00000566078 DEFB132Q7Z7B7 95 aa37.9■■■■□ 3.66
CTCF-203ENST00000566078 NOP58Q9Y2X3 529 aaKnown RBP37.89■■■■□ 3.66
CTCF-203ENST00000566078 RFX5P48382 616 aaPredicted RBP37.88■■■■□ 3.65
CTCF-203ENST00000566078 SMARCA5O60264 1052 aaPredicted RBP37.87■■■■□ 3.65
CTCF-203ENST00000566078 PDE8AO60658 829 aa37.87■■■■□ 3.65
CTCF-203ENST00000566078 GYS1P13807 737 aa37.87■■■■□ 3.65
CTCF-203ENST00000566078 HSP90AB4PQ58FF6 505 aa37.87■■■■□ 3.65
CTCF-203ENST00000566078 NUTM1Q86Y26 1132 aa37.87■■■■□ 3.65
CTCF-203ENST00000566078 RAB11FIP3O75154 756 aa37.87■■■■□ 3.65
CTCF-203ENST00000566078 LRRCC1Q9C099 1032 aa37.87■■■■□ 3.65
CTCF-203ENST00000566078 CTSWP56202 376 aa37.86■■■■□ 3.65
CTCF-203ENST00000566078 OS9Q13438 667 aaPredicted RBP37.86■■■■□ 3.65
CTCF-203ENST00000566078 FLAD1Q8NFF5 587 aa37.86■■■■□ 3.65
CTCF-203ENST00000566078 KLHDC4Q8TBB5 520 aa37.86■■■■□ 3.65
CTCF-203ENST00000566078 SPEF2Q9C093 1822 aa37.85■■■■□ 3.65
CTCF-203ENST00000566078 NYXQ9GZU5 481 aa37.85■■■■□ 3.65
CTCF-203ENST00000566078 ANO8Q9HCE9 1232 aaPredicted RBP37.85■■■■□ 3.65
CTCF-203ENST00000566078 CARMIL3Q8ND23 1372 aa37.85■■■■□ 3.65
CTCF-203ENST00000566078 CSF1RP07333 972 aa37.84■■■■□ 3.65
CTCF-203ENST00000566078 COL23A1Q86Y22 540 aaPredicted RBP37.84■■■■□ 3.65
CTCF-203ENST00000566078 BCL11AQ9H165 835 aa37.84■■■■□ 3.65
CTCF-203ENST00000566078 HCLS1P14317 486 aaPredicted RBP37.83■■■■□ 3.65
CTCF-203ENST00000566078 CCDC125Q86Z20 511 aa37.83■■■■□ 3.65
CTCF-203ENST00000566078 COPRSQ9NQ92 184 aa37.83■■■■□ 3.65
CTCF-203ENST00000566078 MSH5O43196 834 aa37.83■■■■□ 3.65
CTCF-203ENST00000566078 PTPN12Q05209 780 aaKnown RBP37.83■■■■□ 3.65
CTCF-203ENST00000566078 NFIXQ14938 502 aa37.83■■■■□ 3.65
CTCF-203ENST00000566078 FAM161AQ3B820 660 aa37.83■■■■□ 3.65
Retrieved 100 of 20,778 RNA–protein pairs in 53.1 ms