RNA–Protein interactions for RNA: ENST00000565922.1

CMTM3-211, Transcript of CKLF like MARVEL transmembrane domain containing 3, humanhuman

TSL 1 (best) BASIC

Gene CMTM3, Length 615 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CMTM3-211ENST00000565922 PRPF40BQ6NWY9 871 aaKnown RBP25.59■■□□□ 1.69
CMTM3-211ENST00000565922 FANCIQ9NVI1 1328 aa25.59■■□□□ 1.69
CMTM3-211ENST00000565922 DICER1Q9UPY3 1922 aaKnown RBP25.59■■□□□ 1.69
CMTM3-211ENST00000565922 TWISTNBQ3B726 338 aaPredicted RBP25.58■■□□□ 1.69
CMTM3-211ENST00000565922 STK31Q9BXU1 1019 aa25.58■■□□□ 1.69
CMTM3-211ENST00000565922 LAMB2P55268 1798 aa25.57■■□□□ 1.68
CMTM3-211ENST00000565922 C9orf131Q5VYM1 1079 aa25.57■■□□□ 1.68
CMTM3-211ENST00000565922 NLRP10Q86W26 655 aa25.57■■□□□ 1.68
CMTM3-211ENST00000565922 TSPYL6Q8N831 410 aa25.57■■□□□ 1.68
CMTM3-211ENST00000565922 C21orf2O43822 256 aa25.56■■□□□ 1.68
CMTM3-211ENST00000565922 DDX58O95786 925 aaKnown RBP25.56■■□□□ 1.68
CMTM3-211ENST00000565922 CRY2Q49AN0 593 aa25.56■■□□□ 1.68
CMTM3-211ENST00000565922 RIC3Q7Z5B4 369 aa25.56■■□□□ 1.68
CMTM3-211ENST00000565922 RPGRQ92834 1020 aaKnown RBP25.56■■□□□ 1.68
CMTM3-211ENST00000565922 MYH16Q9H6N6 1097 aa25.56■■□□□ 1.68
CMTM3-211ENST00000565922 GPBP1L1Q9HC44 474 aaPredicted RBP25.56■■□□□ 1.68
CMTM3-211ENST00000565922 TIAM2Q8IVF5 1701 aa25.56■■□□□ 1.68
CMTM3-211ENST00000565922 RNF181Q9P0P0 153 aa25.55■■□□□ 1.68
CMTM3-211ENST00000565922 ZC3H4Q9UPT8 1303 aaKnown RBP25.55■■□□□ 1.68
CMTM3-211ENST00000565922 LMNB1P20700 586 aa25.54■■□□□ 1.68
CMTM3-211ENST00000565922 NLRP3Q96P20 1036 aa25.54■■□□□ 1.68
CMTM3-211ENST00000565922 TRMT112Q9UI30 125 aaKnown RBP25.54■■□□□ 1.68
CMTM3-211ENST00000565922 RASSF7Q02833 373 aa25.53■■□□□ 1.68
CMTM3-211ENST00000565922 SLC10A5Q5PT55 438 aa25.53■■□□□ 1.68
CMTM3-211ENST00000565922 PHAXQ9H814 394 aaKnown RBP25.53■■□□□ 1.68
CMTM3-211ENST00000565922 ZNF219Q9P2Y4 722 aaPredicted RBP25.53■■□□□ 1.68
CMTM3-211ENST00000565922 SH3TC1Q8TE82 1336 aa25.53■■□□□ 1.68
CMTM3-211ENST00000565922 DDX60Q8IY21 1712 aaKnown RBP25.52■■□□□ 1.68
CMTM3-211ENST00000565922 ISCA1Q9BUE6 129 aa25.52■■□□□ 1.68
CMTM3-211ENST00000565922 LTBP3Q9NS15 1303 aa25.52■■□□□ 1.68
CMTM3-211ENST00000565922 NFKBIEO00221 500 aa25.51■■□□□ 1.67
CMTM3-211ENST00000565922 CCDC93Q567U6 631 aa25.51■■□□□ 1.67
CMTM3-211ENST00000565922 RBM17Q96I25 401 aaKnown RBP25.51■■□□□ 1.67
CMTM3-211ENST00000565922 TAOK3Q9H2K8 898 aa25.51■■□□□ 1.67
CMTM3-211ENST00000565922 HOXA10P31260 410 aaPredicted RBP25.5■■□□□ 1.67
CMTM3-211ENST00000565922 TRIM28Q13263 835 aaKnown RBP25.5■■□□□ 1.67
CMTM3-211ENST00000565922 ZNF526Q8TF50 670 aaPredicted RBP25.5■■□□□ 1.67
CMTM3-211ENST00000565922 ZNF521Q96K83 1311 aa25.48■■□□□ 1.67
CMTM3-211ENST00000565922 ATP5J2-PTCD1G3V325 749 aa25.48■■□□□ 1.67
CMTM3-211ENST00000565922 EXOSC9Q06265 439 aaKnown RBP25.48■■□□□ 1.67
CMTM3-211ENST00000565922 CRAMP1Q96RY5 1269 aa25.48■■□□□ 1.67
CMTM3-211ENST00000565922 CC2D2BQ6DHV5 1058 aa25.47■■□□□ 1.67
CMTM3-211ENST00000565922 RTKN2Q8IZC4 609 aa25.47■■□□□ 1.67
CMTM3-211ENST00000565922 C7orf43Q8WVR3 580 aa25.47■■□□□ 1.67
CMTM3-211ENST00000565922 KDM2BQ8NHM5 1336 aa25.46■■□□□ 1.67
CMTM3-211ENST00000565922 HSP90B1P14625 803 aaKnown RBP25.46■■□□□ 1.67
CMTM3-211ENST00000565922 GRIPAP1Q4V328 841 aa25.46■■□□□ 1.67
CMTM3-211ENST00000565922 METTL22Q9BUU2 404 aaPredicted RBP25.46■■□□□ 1.67
CMTM3-211ENST00000565922 VAMP4O75379 141 aa25.45■■□□□ 1.66
CMTM3-211ENST00000565922 SLC4A2P04920 1241 aa25.45■■□□□ 1.66
CMTM3-211ENST00000565922 KSR2Q6VAB6 950 aa25.45■■□□□ 1.66
CMTM3-211ENST00000565922 MYD88Q99836 296 aa25.45■■□□□ 1.66
CMTM3-211ENST00000565922 HCLS1P14317 486 aaPredicted RBP25.44■■□□□ 1.66
CMTM3-211ENST00000565922 NEXNQ0ZGT2 675 aa25.44■■□□□ 1.66
CMTM3-211ENST00000565922 DIEXFQ68CQ4 756 aaKnown RBP25.44■■□□□ 1.66
CMTM3-211ENST00000565922 CCDC191Q8NCU4 936 aa25.44■■□□□ 1.66
CMTM3-211ENST00000565922 TMX4Q9H1E5 349 aaPredicted RBP25.44■■□□□ 1.66
CMTM3-211ENST00000565922 SPINK5Q9NQ38 1064 aaPredicted RBP25.44■■□□□ 1.66
CMTM3-211ENST00000565922 MAP3K2Q9Y2U5 619 aa25.44■■□□□ 1.66
CMTM3-211ENST00000565922 TCERG1O14776 1098 aaKnown RBP25.43■■□□□ 1.66
CMTM3-211ENST00000565922 MYH3P11055 1940 aa25.43■■□□□ 1.66
CMTM3-211ENST00000565922 PI4KAP2A4QPH2 592 aa25.42■■□□□ 1.66
CMTM3-211ENST00000565922 PPEF1O14829 653 aaPredicted RBP25.42■■□□□ 1.66
CMTM3-211ENST00000565922 FKBP4Q02790 459 aaKnown RBP eCLIP25.42■■□□□ 1.66
CMTM3-211ENST00000565922 C3orf67Q6ZVT6 689 aa25.42■■□□□ 1.66
CMTM3-211ENST00000565922 PI4KAP1Q8N8J0 262 aa25.42■■□□□ 1.66
CMTM3-211ENST00000565922 ZBTB38Q8NAP3 1195 aaPredicted RBP25.42■■□□□ 1.66
CMTM3-211ENST00000565922 FAM89AQ96GI7 184 aa25.42■■□□□ 1.66
CMTM3-211ENST00000565922 CWC25Q9NXE8 425 aaPredicted RBP25.42■■□□□ 1.66
CMTM3-211ENST00000565922 E9PSI1 815 aa25.41■■□□□ 1.66
CMTM3-211ENST00000565922 PRELPP51888 382 aa25.41■■□□□ 1.66
CMTM3-211ENST00000565922 FLIIQ13045 1269 aa25.41■■□□□ 1.66
CMTM3-211ENST00000565922 DDX46Q7L014 1031 aaKnown RBP25.41■■□□□ 1.66
CMTM3-211ENST00000565922 C1QTNF8P60827 252 aa25.4■■□□□ 1.66
CMTM3-211ENST00000565922 SYNE4Q8N205 404 aa25.4■■□□□ 1.66
CMTM3-211ENST00000565922 TAF1P21675 1872 aa25.4■■□□□ 1.66
CMTM3-211ENST00000565922 ABCC4O15439 1325 aa25.39■■□□□ 1.66
CMTM3-211ENST00000565922 FKBP5Q13451 457 aaPredicted RBP25.39■■□□□ 1.66
CMTM3-211ENST00000565922 IRS4O14654 1257 aaPredicted RBP25.38■■□□□ 1.65
CMTM3-211ENST00000565922 BBOX1O75936 387 aa25.38■■□□□ 1.65
CMTM3-211ENST00000565922 PCCAP05165 728 aaPredicted RBP25.38■■□□□ 1.65
CMTM3-211ENST00000565922 DPY19L2Q6NUT2 758 aa25.38■■□□□ 1.65
CMTM3-211ENST00000565922 G2E3Q7L622 706 aa25.38■■□□□ 1.65
CMTM3-211ENST00000565922 PSMD1Q99460 953 aa25.38■■□□□ 1.65
CMTM3-211ENST00000565922 SNED1Q8TER0 1413 aa25.37■■□□□ 1.65
CMTM3-211ENST00000565922 SF3B3Q15393 1217 aaKnown RBP25.37■■□□□ 1.65
CMTM3-211ENST00000565922 TMC4Q7Z404 712 aa25.37■■□□□ 1.65
CMTM3-211ENST00000565922 ZNF428Q96B54 188 aa25.37■■□□□ 1.65
CMTM3-211ENST00000565922 GLTPD2A6NH11 291 aa25.36■■□□□ 1.65
CMTM3-211ENST00000565922 GRAPQ13588 217 aa25.36■■□□□ 1.65
CMTM3-211ENST00000565922 RTL5Q5HYW3 569 aaPredicted RBP25.36■■□□□ 1.65
CMTM3-211ENST00000565922 OLFM4Q6UX06 510 aa25.36■■□□□ 1.65
CMTM3-211ENST00000565922 GRAPLQ8TC17 118 aaPredicted RBP25.36■■□□□ 1.65
CMTM3-211ENST00000565922 ATP6V0A2Q9Y487 856 aa25.36■■□□□ 1.65
CMTM3-211ENST00000565922 LRRC37AA6NMS7 1700 aa25.36■■□□□ 1.65
CMTM3-211ENST00000565922 KIF3CO14782 793 aa25.35■■□□□ 1.65
CMTM3-211ENST00000565922 DNAAF4Q8WXU2 420 aa25.34■■□□□ 1.65
CMTM3-211ENST00000565922 NMRK2Q9NPI5 230 aa25.34■■□□□ 1.65
CMTM3-211ENST00000565922 WDR90Q96KV7 1748 aa25.34■■□□□ 1.65
CMTM3-211ENST00000565922 CDHR2Q9BYE9 1310 aa25.34■■□□□ 1.65
Retrieved 100 of 20,778 RNA–protein pairs in 80 ms