RNA–Protein interactions for RNA: ENST00000562609.2

GTF3C1-203, Transcript of general transcription factor IIIC subunit 1, humanhuman

TSL 5

Gene GTF3C1, Length 2,824 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GTF3C1-203ENST00000562609 CUL4AQ13619 759 aa16.65■□□□□ 0.26
GTF3C1-203ENST00000562609 AKAP4Q5JQC9 854 aa16.65■□□□□ 0.26
GTF3C1-203ENST00000562609 FBXO38Q6PIJ6 1188 aa16.65■□□□□ 0.26
GTF3C1-203ENST00000562609 CCDC186Q7Z3E2 898 aa16.65■□□□□ 0.26
GTF3C1-203ENST00000562609 CREBRFQ8IUR6 639 aa16.65■□□□□ 0.26
GTF3C1-203ENST00000562609 CNPY2Q9Y2B0 182 aa16.65■□□□□ 0.26
GTF3C1-203ENST00000562609 LRRC37A3O60309 1634 aa16.64■□□□□ 0.25
GTF3C1-203ENST00000562609 RGPD5Q99666 1765 aa16.64■□□□□ 0.25
GTF3C1-203ENST00000562609 FUCA2Q9BTY2 467 aa16.64■□□□□ 0.25
GTF3C1-203ENST00000562609 ZNF215Q9UL58 517 aaPredicted RBP16.64■□□□□ 0.25
GTF3C1-203ENST00000562609 PNMA6EA0A0J9YXQ4 647 aa16.64■□□□□ 0.25
GTF3C1-203ENST00000562609 TPD52L1Q16890 204 aaPredicted RBP16.64■□□□□ 0.25
GTF3C1-203ENST00000562609 TSHZ3Q63HK5 1081 aa16.64■□□□□ 0.25
GTF3C1-203ENST00000562609 RSPH14Q9UHP6 348 aa16.63■□□□□ 0.25
GTF3C1-203ENST00000562609 STRCP1A6NGW2 1772 aa16.63■□□□□ 0.25
GTF3C1-203ENST00000562609 ERBB3P21860 1342 aa16.63■□□□□ 0.25
GTF3C1-203ENST00000562609 WDR33Q9C0J8 1336 aaKnown RBP16.63■□□□□ 0.25
GTF3C1-203ENST00000562609 ERC2O15083 957 aa16.63■□□□□ 0.25
GTF3C1-203ENST00000562609 RNMTO43148 476 aaKnown RBP16.63■□□□□ 0.25
GTF3C1-203ENST00000562609 GNAI2P04899 355 aa16.63■□□□□ 0.25
GTF3C1-203ENST00000562609 CSB-PGBD3P0DP91 1061 aa16.63■□□□□ 0.25
GTF3C1-203ENST00000562609 MCM2P49736 904 aa16.63■□□□□ 0.25
GTF3C1-203ENST00000562609 EFCC1Q9HA90 598 aa16.63■□□□□ 0.25
GTF3C1-203ENST00000562609 LRRFIP2Q9Y608 721 aaKnown RBP16.63■□□□□ 0.25
GTF3C1-203ENST00000562609 DRC7Q8IY82 874 aa16.62■□□□□ 0.25
GTF3C1-203ENST00000562609 INTS4Q96HW7 963 aaKnown RBP16.62■□□□□ 0.25
GTF3C1-203ENST00000562609 MST1RQ04912 1400 aa16.62■□□□□ 0.25
GTF3C1-203ENST00000562609 TMEM87AQ8NBN3 555 aa16.62■□□□□ 0.25
GTF3C1-203ENST00000562609 KIF1BPQ96EK5 621 aa16.62■□□□□ 0.25
GTF3C1-203ENST00000562609 SRCIN1Q9C0H9 1055 aa16.62■□□□□ 0.25
GTF3C1-203ENST00000562609 UBE2HP62256 183 aa16.61■□□□□ 0.25
GTF3C1-203ENST00000562609 ELF2Q15723 593 aa16.61■□□□□ 0.25
GTF3C1-203ENST00000562609 CEP135Q66GS9 1140 aa16.61■□□□□ 0.25
GTF3C1-203ENST00000562609 SLC39A6Q13433 755 aa16.61■□□□□ 0.25
GTF3C1-203ENST00000562609 USP44Q9H0E7 712 aa16.61■□□□□ 0.25
GTF3C1-203ENST00000562609 NRBP1Q9UHY1 535 aa16.61■□□□□ 0.25
GTF3C1-203ENST00000562609 PI4KAP2A4QPH2 592 aa16.6■□□□□ 0.25
GTF3C1-203ENST00000562609 AMOTQ4VCS5 1084 aa16.6■□□□□ 0.25
GTF3C1-203ENST00000562609 PI4KAP1Q8N8J0 262 aa16.6■□□□□ 0.25
GTF3C1-203ENST00000562609 TRPM3Q9HCF6 1732 aaPredicted RBP16.6■□□□□ 0.25
GTF3C1-203ENST00000562609 PROSER3Q2NL68 480 aa16.6■□□□□ 0.25
GTF3C1-203ENST00000562609 GTF3C6Q969F1 213 aa16.6■□□□□ 0.25
GTF3C1-203ENST00000562609 ZNF446Q9NWS9 450 aa16.6■□□□□ 0.25
GTF3C1-203ENST00000562609 ZSCAN21Q9Y5A6 473 aaPredicted RBP16.6■□□□□ 0.25
GTF3C1-203ENST00000562609 SLIT3O75094 1523 aa16.6■□□□□ 0.25
GTF3C1-203ENST00000562609 FAM208AQ9UK61 1670 aaKnown RBP16.59■□□□□ 0.25
GTF3C1-203ENST00000562609 MED1Q15648 1581 aaPredicted RBP16.59■□□□□ 0.25
GTF3C1-203ENST00000562609 TMX1Q9H3N1 280 aa16.59■□□□□ 0.25
GTF3C1-203ENST00000562609 ZKSCAN7Q9P0L1 754 aaPredicted RBP16.59■□□□□ 0.25
GTF3C1-203ENST00000562609 NPHP1O15259 732 aa16.59■□□□□ 0.25
GTF3C1-203ENST00000562609 FIBPO43427 364 aa16.59■□□□□ 0.25
GTF3C1-203ENST00000562609 HMMRO75330 724 aa16.59■□□□□ 0.25
GTF3C1-203ENST00000562609 ZSCAN25Q6NSZ9 544 aa16.59■□□□□ 0.25
GTF3C1-203ENST00000562609 CADPS2Q86UW7 1296 aa16.59■□□□□ 0.25
GTF3C1-203ENST00000562609 RAPGEF4Q8WZA2 1011 aa16.59■□□□□ 0.25
GTF3C1-203ENST00000562609 RASSF4Q9H2L5 321 aa16.59■□□□□ 0.25
GTF3C1-203ENST00000562609 YY1AP1Q9H869 796 aa16.59■□□□□ 0.25
GTF3C1-203ENST00000562609 BABAM1Q9NWV8 329 aa16.59■□□□□ 0.25
GTF3C1-203ENST00000562609 NBPF7P0C2Y1 421 aaPredicted RBP16.58■□□□□ 0.25
GTF3C1-203ENST00000562609 TCHHQ07283 1943 aa16.58■□□□□ 0.24
GTF3C1-203ENST00000562609 GNAI3P08754 354 aa16.57■□□□□ 0.24
GTF3C1-203ENST00000562609 GEMIN8Q9NWZ8 242 aaKnown RBP16.57■□□□□ 0.24
GTF3C1-203ENST00000562609 RPAP1Q9BWH6 1393 aaPredicted RBP16.57■□□□□ 0.24
GTF3C1-203ENST00000562609 UBTFL1P0CB47 393 aaPredicted RBP16.57■□□□□ 0.24
GTF3C1-203ENST00000562609 CCDC192P0DO97 292 aa16.57■□□□□ 0.24
GTF3C1-203ENST00000562609 BMS1Q14692 1282 aaKnown RBP16.57■□□□□ 0.24
GTF3C1-203ENST00000562609 NEK11Q8NG66 645 aa16.57■□□□□ 0.24
GTF3C1-203ENST00000562609 PALD1Q9ULE6 856 aa16.56■□□□□ 0.24
GTF3C1-203ENST00000562609 NPHP3Q7Z494 1330 aa16.56■□□□□ 0.24
GTF3C1-203ENST00000562609 AIMP1Q12904 312 aaKnown RBP16.56■□□□□ 0.24
GTF3C1-203ENST00000562609 LUZP1Q86V48 1076 aa16.56■□□□□ 0.24
GTF3C1-203ENST00000562609 NFATC2IPQ8NCF5 419 aa16.56■□□□□ 0.24
GTF3C1-203ENST00000562609 ERO1AQ96HE7 468 aa16.56■□□□□ 0.24
GTF3C1-203ENST00000562609 GIGYF1O75420 1035 aaPredicted RBP16.55■□□□□ 0.24
GTF3C1-203ENST00000562609 NOP2P46087 812 aaKnown RBP16.55■□□□□ 0.24
GTF3C1-203ENST00000562609 PIP4K2AP48426 406 aaPredicted RBP16.55■□□□□ 0.24
GTF3C1-203ENST00000562609 SLFNL1Q499Z3 407 aa16.55■□□□□ 0.24
GTF3C1-203ENST00000562609 FAM200AQ8TCP9 573 aa16.55■□□□□ 0.24
GTF3C1-203ENST00000562609 IL1RAPL2Q9NP60 686 aa16.55■□□□□ 0.24
GTF3C1-203ENST00000562609 UPF3BQ9BZI7 483 aaKnown RBP16.55■□□□□ 0.24
GTF3C1-203ENST00000562609 DHX16O60231 1041 aaKnown RBP16.55■□□□□ 0.24
GTF3C1-203ENST00000562609 ATP8B2P98198 1209 aa16.55■□□□□ 0.24
GTF3C1-203ENST00000562609 SYT10Q6XYQ8 523 aa16.55■□□□□ 0.24
GTF3C1-203ENST00000562609 ZNF335Q9H4Z2 1342 aaPredicted RBP16.54■□□□□ 0.24
GTF3C1-203ENST00000562609 C10orf67Q8IYJ2 551 aa16.54■□□□□ 0.24
GTF3C1-203ENST00000562609 CACTINQ8WUQ7 758 aaKnown RBP16.54■□□□□ 0.24
GTF3C1-203ENST00000562609 DNAAF4Q8WXU2 420 aa16.54■□□□□ 0.24
GTF3C1-203ENST00000562609 TRIM5Q9C035 493 aa16.54■□□□□ 0.24
GTF3C1-203ENST00000562609 PHRF1Q9P1Y6 1649 aaKnown RBP16.54■□□□□ 0.24
GTF3C1-203ENST00000562609 LOC102724159A0A0B4J2E5 919 aa16.54■□□□□ 0.24
GTF3C1-203ENST00000562609 GTF2A1P52655 376 aaPredicted RBP16.54■□□□□ 0.24
GTF3C1-203ENST00000562609 PWP2Q15269 919 aaKnown RBP16.54■□□□□ 0.24
GTF3C1-203ENST00000562609 BRINP3Q76B58 766 aa16.53■□□□□ 0.24
GTF3C1-203ENST00000562609 PPP1R42Q7Z4L9 355 aa16.53■□□□□ 0.24
GTF3C1-203ENST00000562609 ALS2Q96Q42 1657 aa16.53■□□□□ 0.24
GTF3C1-203ENST00000562609 USP27XA6NNY8 438 aa16.53■□□□□ 0.24
GTF3C1-203ENST00000562609 TRIM66O15016 1216 aa16.53■□□□□ 0.24
GTF3C1-203ENST00000562609 ZSCAN22P10073 491 aaPredicted RBP16.53■□□□□ 0.24
GTF3C1-203ENST00000562609 TATP17735 454 aaPredicted RBP16.53■□□□□ 0.24
GTF3C1-203ENST00000562609 PTPN14Q15678 1187 aa16.53■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 139.5 ms