RNA–Protein interactions for RNA: ENST00000561689.6

CLN3-209, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,957 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-209ENST00000561689 RREB1Q92766 1687 aa26.29■■□□□ 1.8
CLN3-209ENST00000561689 CNTNAP4Q9C0A0 1308 aa26.29■■□□□ 1.8
CLN3-209ENST00000561689 TRIM37O94972 964 aa26.29■■□□□ 1.8
CLN3-209ENST00000561689 CAMTA2O94983 1202 aa26.29■■□□□ 1.8
CLN3-209ENST00000561689 LMBR1LQ6UX01 489 aa26.29■■□□□ 1.8
CLN3-209ENST00000561689 ZNF831Q5JPB2 1677 aa26.29■■□□□ 1.8
CLN3-209ENST00000561689 SBF2Q86WG5 1849 aa26.29■■□□□ 1.8
CLN3-209ENST00000561689 RXRBP28702 533 aa26.28■■□□□ 1.8
CLN3-209ENST00000561689 SMIM5Q71RC9 77 aa26.28■■□□□ 1.8
CLN3-209ENST00000561689 KIF1BPQ96EK5 621 aa26.28■■□□□ 1.8
CLN3-209ENST00000561689 COL5A3P25940 1745 aaPredicted RBP26.28■■□□□ 1.8
CLN3-209ENST00000561689 BRWD3Q6RI45 1802 aa26.28■■□□□ 1.8
CLN3-209ENST00000561689 BMP2KLQ5H9B9 411 aa26.27■■□□□ 1.8
CLN3-209ENST00000561689 PCCAP05165 728 aaPredicted RBP26.27■■□□□ 1.8
CLN3-209ENST00000561689 ZBTB38Q8NAP3 1195 aaPredicted RBP26.27■■□□□ 1.8
CLN3-209ENST00000561689 SIL1Q9H173 461 aa26.27■■□□□ 1.8
CLN3-209ENST00000561689 CHMP3Q9Y3E7 222 aa26.26■■□□□ 1.79
CLN3-209ENST00000561689 UBN2Q6ZU65 1347 aa26.26■■□□□ 1.79
CLN3-209ENST00000561689 ZNF34Q8IZ26 560 aa26.26■■□□□ 1.79
CLN3-209ENST00000561689 SYNE4Q8N205 404 aa26.26■■□□□ 1.79
CLN3-209ENST00000561689 GSPT1P15170 499 aaKnown RBP26.25■■□□□ 1.79
CLN3-209ENST00000561689 RFX5P48382 616 aaPredicted RBP26.25■■□□□ 1.79
CLN3-209ENST00000561689 RC3H1Q5TC82 1133 aaKnown RBP26.25■■□□□ 1.79
CLN3-209ENST00000561689 RGS17Q9UGC6 210 aaPredicted RBP26.25■■□□□ 1.79
CLN3-209ENST00000561689 G3BP1Q13283 466 aaKnown RBP eCLIP26.24■■□□□ 1.79
CLN3-209ENST00000561689 GNPATO15228 680 aa26.24■■□□□ 1.79
CLN3-209ENST00000561689 SEC24BO95487 1268 aa26.24■■□□□ 1.79
CLN3-209ENST00000561689 PDE1AP54750 535 aa26.24■■□□□ 1.79
CLN3-209ENST00000561689 TTC22Q5TAA0 569 aa26.24■■□□□ 1.79
CLN3-209ENST00000561689 TSHZ3Q63HK5 1081 aa26.24■■□□□ 1.79
CLN3-209ENST00000561689 TRMT112Q9UI30 125 aaKnown RBP26.24■■□□□ 1.79
CLN3-209ENST00000561689 NUTM1Q86Y26 1132 aa26.23■■□□□ 1.79
CLN3-209ENST00000561689 SALL3Q9BXA9 1300 aa26.23■■□□□ 1.79
CLN3-209ENST00000561689 PTPN12Q05209 780 aaKnown RBP26.22■■□□□ 1.79
CLN3-209ENST00000561689 ERC1Q8IUD2 1116 aa26.22■■□□□ 1.79
CLN3-209ENST00000561689 LRRC4BQ9NT99 713 aa26.22■■□□□ 1.79
CLN3-209ENST00000561689 RPS6KA4O75676 772 aa26.22■■□□□ 1.79
CLN3-209ENST00000561689 MX1P20591 662 aa26.22■■□□□ 1.79
CLN3-209ENST00000561689 COPRSQ9NQ92 184 aa26.22■■□□□ 1.79
CLN3-209ENST00000561689 SASH1O94885 1247 aa26.2■■□□□ 1.79
CLN3-209ENST00000561689 OSBPL3Q9H4L5 887 aa26.2■■□□□ 1.79
CLN3-209ENST00000561689 NUP98P52948 1817 aa26.2■■□□□ 1.78
CLN3-209ENST00000561689 FAM177BA6PVY3 158 aa26.2■■□□□ 1.78
CLN3-209ENST00000561689 SUSD4Q5VX71 490 aa26.2■■□□□ 1.78
CLN3-209ENST00000561689 POTEAQ6S8J7 498 aa26.2■■□□□ 1.78
CLN3-209ENST00000561689 AMIGO3Q86WK7 504 aa26.2■■□□□ 1.78
CLN3-209ENST00000561689 NIP7Q9Y221 180 aaKnown RBP eCLIP26.2■■□□□ 1.78
CLN3-209ENST00000561689 RTCBQ9Y3I0 505 aaKnown RBP26.19■■□□□ 1.78
CLN3-209ENST00000561689 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP26.19■■□□□ 1.78
CLN3-209ENST00000561689 LY75O60449 1722 aa26.19■■□□□ 1.78
CLN3-209ENST00000561689 CCDC85AQ96PX6 553 aaPredicted RBP26.18■■□□□ 1.78
CLN3-209ENST00000561689 ZNF652Q9Y2D9 606 aa26.18■■□□□ 1.78
CLN3-209ENST00000561689 CDHR2Q9BYE9 1310 aa26.18■■□□□ 1.78
CLN3-209ENST00000561689 IRS4O14654 1257 aaPredicted RBP26.18■■□□□ 1.78
CLN3-209ENST00000561689 CLASRPQ8N2M8 674 aaKnown RBP26.18■■□□□ 1.78
CLN3-209ENST00000561689 PLA2G12BQ9BX93 195 aa26.18■■□□□ 1.78
CLN3-209ENST00000561689 STAP2Q9UGK3 403 aa26.16■■□□□ 1.78
CLN3-209ENST00000561689 CLEC4GQ6UXB4 293 aa26.16■■□□□ 1.78
CLN3-209ENST00000561689 AK7Q96M32 723 aa26.16■■□□□ 1.78
CLN3-209ENST00000561689 UTP14AQ9BVJ6 771 aaKnown RBP26.16■■□□□ 1.78
CLN3-209ENST00000561689 SRP68Q9UHB9 627 aaKnown RBP26.16■■□□□ 1.78
CLN3-209ENST00000561689 ANKRD36CQ5JPF3 1778 aa26.16■■□□□ 1.78
CLN3-209ENST00000561689 PARP10Q53GL7 1025 aa26.15■■□□□ 1.78
CLN3-209ENST00000561689 USPL1Q5W0Q7 1092 aa26.15■■□□□ 1.78
CLN3-209ENST00000561689 ZNF594Q96JF6 807 aaPredicted RBP26.15■■□□□ 1.78
CLN3-209ENST00000561689 CSF1RP07333 972 aa26.15■■□□□ 1.78
CLN3-209ENST00000561689 SDSP20132 328 aa26.15■■□□□ 1.78
CLN3-209ENST00000561689 NARFQ9UHQ1 456 aa26.15■■□□□ 1.78
CLN3-209ENST00000561689 PHF14O94880 888 aa26.14■■□□□ 1.77
CLN3-209ENST00000561689 AACSQ86V21 672 aa26.14■■□□□ 1.77
CLN3-209ENST00000561689 ARHGEF1Q92888 912 aaKnown RBP26.14■■□□□ 1.77
CLN3-209ENST00000561689 SH3TC1Q8TE82 1336 aa26.13■■□□□ 1.77
CLN3-209ENST00000561689 CCDC57Q2TAC2 916 aa26.13■■□□□ 1.77
CLN3-209ENST00000561689 SLC27A3Q5K4L6 730 aa26.13■■□□□ 1.77
CLN3-209ENST00000561689 BCL2L12Q9HB09 334 aa26.13■■□□□ 1.77
CLN3-209ENST00000561689 MSH5O43196 834 aa26.13■■□□□ 1.77
CLN3-209ENST00000561689 ZPR1O75312 459 aa26.13■■□□□ 1.77
CLN3-209ENST00000561689 IFIT2P09913 472 aaKnown RBP26.13■■□□□ 1.77
CLN3-209ENST00000561689 CTSWP56202 376 aa26.12■■□□□ 1.77
CLN3-209ENST00000561689 TFCP2Q12800 502 aa26.12■■□□□ 1.77
CLN3-209ENST00000561689 BICDL1Q6ZP65 573 aa26.12■■□□□ 1.77
CLN3-209ENST00000561689 TTLL11Q8NHH1 800 aa26.12■■□□□ 1.77
CLN3-209ENST00000561689 EAF2Q96CJ1 260 aaPredicted RBP26.12■■□□□ 1.77
CLN3-209ENST00000561689 C4BP0C0L5 1744 aa26.12■■□□□ 1.77
CLN3-209ENST00000561689 PDE8AO60658 829 aa26.11■■□□□ 1.77
CLN3-209ENST00000561689 HCLS1P14317 486 aaPredicted RBP26.11■■□□□ 1.77
CLN3-209ENST00000561689 TBC1D9Q6ZT07 1266 aa26.11■■□□□ 1.77
CLN3-209ENST00000561689 NTSR2O95665 410 aa26.11■■□□□ 1.77
CLN3-209ENST00000561689 TRAPPC3LQ5T215 181 aa26.11■■□□□ 1.77
CLN3-209ENST00000561689 PROM2Q8N271 834 aa26.11■■□□□ 1.77
CLN3-209ENST00000561689 CDC45O75419 566 aa26.1■■□□□ 1.77
CLN3-209ENST00000561689 IFIT5Q13325 482 aaKnown RBP26.1■■□□□ 1.77
CLN3-209ENST00000561689 TXNRD1Q16881 649 aa26.1■■□□□ 1.77
CLN3-209ENST00000561689 TBC1D9BQ66K14 1250 aa26.1■■□□□ 1.77
CLN3-209ENST00000561689 ATG9AQ7Z3C6 839 aa26.1■■□□□ 1.77
CLN3-209ENST00000561689 CCDC8Q9H0W5 538 aaPredicted RBP26.1■■□□□ 1.77
CLN3-209ENST00000561689 GREM2Q9H772 168 aa26.1■■□□□ 1.77
CLN3-209ENST00000561689 TAF1LQ8IZX4 1826 aa26.1■■□□□ 1.77
CLN3-209ENST00000561689 AOX1Q06278 1338 aa26.1■■□□□ 1.77
CLN3-209ENST00000561689 APBA3O96018 575 aa26.09■■□□□ 1.77
Retrieved 100 of 20,778 RNA–protein pairs in 11.1 ms