RNA–Protein interactions for RNA: ENST00000559873.5

USP3-216, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5

Gene USP3, Length 584 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-216ENST00000559873 ALDH1L1O75891 902 aa12.76□□□□□ -0.37
USP3-216ENST00000559873 MS4A1P11836 297 aa12.76□□□□□ -0.37
USP3-216ENST00000559873 PRR5LQ6MZQ0 368 aa12.76□□□□□ -0.37
USP3-216ENST00000559873 SLC4A10Q6U841 1118 aa12.76□□□□□ -0.37
USP3-216ENST00000559873 ATF7IPQ6VMQ6 1270 aa12.76□□□□□ -0.37
USP3-216ENST00000559873 FTSJ3Q8IY81 847 aaKnown RBP12.76□□□□□ -0.37
USP3-216ENST00000559873 SRCIN1Q9C0H9 1055 aa12.76□□□□□ -0.37
USP3-216ENST00000559873 TRMT112Q9UI30 125 aaKnown RBP12.76□□□□□ -0.37
USP3-216ENST00000559873 PDZRN3Q9UPQ7 1066 aa12.76□□□□□ -0.37
USP3-216ENST00000559873 CD2APQ9Y5K6 639 aa12.76□□□□□ -0.37
USP3-216ENST00000559873 SH3TC1Q8TE82 1336 aa12.76□□□□□ -0.37
USP3-216ENST00000559873 RIC1Q4ADV7 1423 aa12.76□□□□□ -0.37
USP3-216ENST00000559873 NEURL1BA8MQ27 555 aa12.75□□□□□ -0.37
USP3-216ENST00000559873 NTSR2O95665 410 aa12.75□□□□□ -0.37
USP3-216ENST00000559873 CCT4P50991 539 aaKnown RBP12.75□□□□□ -0.37
USP3-216ENST00000559873 SUSD4Q5VX71 490 aa12.75□□□□□ -0.37
USP3-216ENST00000559873 AFDNP55196 1824 aaKnown RBP12.74□□□□□ -0.37
USP3-216ENST00000559873 PDE6BP35913 854 aa12.74□□□□□ -0.37
USP3-216ENST00000559873 BEND3Q5T5X7 828 aa12.74□□□□□ -0.37
USP3-216ENST00000559873 ZBTB38Q8NAP3 1195 aaPredicted RBP12.74□□□□□ -0.37
USP3-216ENST00000559873 N4BP2Q86UW6 1770 aaPredicted RBP12.74□□□□□ -0.37
USP3-216ENST00000559873 ABCC4O15439 1325 aa12.73□□□□□ -0.37
USP3-216ENST00000559873 PCCAP05165 728 aaPredicted RBP12.73□□□□□ -0.37
USP3-216ENST00000559873 IGKV5-2P06315 115 aa12.73□□□□□ -0.37
USP3-216ENST00000559873 TRIM27P14373 513 aa12.73□□□□□ -0.37
USP3-216ENST00000559873 GCKRQ14397 625 aa12.73□□□□□ -0.37
USP3-216ENST00000559873 CWF19L2Q2TBE0 894 aaKnown RBP12.73□□□□□ -0.37
USP3-216ENST00000559873 BRIP1Q9BX63 1249 aa12.73□□□□□ -0.37
USP3-216ENST00000559873 ABCC12Q96J65 1359 aa12.72□□□□□ -0.37
USP3-216ENST00000559873 KIF13BQ9NQT8 1826 aa12.72□□□□□ -0.37
USP3-216ENST00000559873 CDHR2Q9BYE9 1310 aa12.72□□□□□ -0.37
USP3-216ENST00000559873 TGFB2P61812 414 aa12.72□□□□□ -0.37
USP3-216ENST00000559873 ERFEQ4G0M1 354 aa12.72□□□□□ -0.37
USP3-216ENST00000559873 NUTM1Q86Y26 1132 aa12.72□□□□□ -0.37
USP3-216ENST00000559873 FHDC1Q9C0D6 1143 aaPredicted RBP12.72□□□□□ -0.37
USP3-216ENST00000559873 C9orf78Q9NZ63 289 aaPredicted RBP12.72□□□□□ -0.37
USP3-216ENST00000559873 HDAC5Q9UQL6 1122 aa12.72□□□□□ -0.37
USP3-216ENST00000559873 H0YIN7 160 aa12.71□□□□□ -0.37
USP3-216ENST00000559873 DZIP1LQ8IYY4 767 aaKnown RBP12.71□□□□□ -0.37
USP3-216ENST00000559873 NLRP3Q96P20 1036 aa12.71□□□□□ -0.37
USP3-216ENST00000559873 LAMB2P55268 1798 aa12.71□□□□□ -0.38
USP3-216ENST00000559873 GRM8O00222 908 aa12.7□□□□□ -0.38
USP3-216ENST00000559873 IRS4O14654 1257 aaPredicted RBP12.7□□□□□ -0.38
USP3-216ENST00000559873 SLC10A5Q5PT55 438 aa12.7□□□□□ -0.38
USP3-216ENST00000559873 UBE3BQ7Z3V4 1068 aa12.7□□□□□ -0.38
USP3-216ENST00000559873 FAM89AQ96GI7 184 aa12.7□□□□□ -0.38
USP3-216ENST00000559873 SYT17Q9BSW7 474 aa12.7□□□□□ -0.38
USP3-216ENST00000559873 INTS3Q68E01 1043 aaKnown RBP12.69□□□□□ -0.38
USP3-216ENST00000559873 C2CD5Q86YS7 1000 aa12.69□□□□□ -0.38
USP3-216ENST00000559873 RPGRQ92834 1020 aaKnown RBP12.69□□□□□ -0.38
USP3-216ENST00000559873 CLUAP1Q96AJ1 413 aa12.69□□□□□ -0.38
USP3-216ENST00000559873 CHMP4BQ9H444 224 aaKnown RBP12.69□□□□□ -0.38
USP3-216ENST00000559873 ANKRD31Q8N7Z5 1873 aa12.68□□□□□ -0.38
USP3-216ENST00000559873 TNRC6CQ9HCJ0 1690 aaKnown RBP12.68□□□□□ -0.38
USP3-216ENST00000559873 H7C1W4 665 aa12.68□□□□□ -0.38
USP3-216ENST00000559873 PDE8AO60658 829 aa12.68□□□□□ -0.38
USP3-216ENST00000559873 PDE3AQ14432 1141 aa12.68□□□□□ -0.38
USP3-216ENST00000559873 RTL5Q5HYW3 569 aaPredicted RBP12.68□□□□□ -0.38
USP3-216ENST00000559873 ITPRIPQ8IWB1 547 aa12.68□□□□□ -0.38
USP3-216ENST00000559873 CCDC24Q8N4L8 307 aa12.68□□□□□ -0.38
USP3-216ENST00000559873 DLEC1Q9Y238 1755 aa12.67□□□□□ -0.38
USP3-216ENST00000559873 KLRG2A4D1S0 409 aaPredicted RBP12.67□□□□□ -0.38
USP3-216ENST00000559873 CENPBP07199 599 aaPredicted RBP12.67□□□□□ -0.38
USP3-216ENST00000559873 GNAI3P08754 354 aa12.67□□□□□ -0.38
USP3-216ENST00000559873 UBTFL1P0CB47 393 aaPredicted RBP12.67□□□□□ -0.38
USP3-216ENST00000559873 HCLS1P14317 486 aaPredicted RBP12.67□□□□□ -0.38
USP3-216ENST00000559873 NPR1P16066 1061 aa12.67□□□□□ -0.38
USP3-216ENST00000559873 DPEP1P16444 411 aa12.67□□□□□ -0.38
USP3-216ENST00000559873 RRP1P56182 461 aaKnown RBP12.67□□□□□ -0.38
USP3-216ENST00000559873 CRY2Q49AN0 593 aa12.67□□□□□ -0.38
USP3-216ENST00000559873 CCDC152Q4G0S7 254 aa12.67□□□□□ -0.38
USP3-216ENST00000559873 STYK1Q6J9G0 422 aa12.67□□□□□ -0.38
USP3-216ENST00000559873 CNKSR1Q969H4 720 aa12.67□□□□□ -0.38
USP3-216ENST00000559873 MASTLQ96GX5 879 aa12.67□□□□□ -0.38
USP3-216ENST00000559873 RBM17Q96I25 401 aaKnown RBP12.67□□□□□ -0.38
USP3-216ENST00000559873 PLA2G12BQ9BX93 195 aa12.67□□□□□ -0.38
USP3-216ENST00000559873 PIM2Q9P1W9 311 aa12.67□□□□□ -0.38
USP3-216ENST00000559873 SRCAPQ6ZRS2 3230 aa12.67□□□□□ -0.38
USP3-216ENST00000559873 UTYO14607 1347 aa12.66□□□□□ -0.38
USP3-216ENST00000559873 COL11A2P13942 1736 aaPredicted RBP12.66□□□□□ -0.38
USP3-216ENST00000559873 DDX60Q8IY21 1712 aaKnown RBP12.66□□□□□ -0.38
USP3-216ENST00000559873 DCAF8L1A6NGE4 600 aa12.66□□□□□ -0.38
USP3-216ENST00000559873 SRGNP10124 158 aa12.66□□□□□ -0.38
USP3-216ENST00000559873 CTSWP56202 376 aa12.66□□□□□ -0.38
USP3-216ENST00000559873 DDX46Q7L014 1031 aaKnown RBP12.66□□□□□ -0.38
USP3-216ENST00000559873 TMEM57Q8N5G2 664 aa12.66□□□□□ -0.38
USP3-216ENST00000559873 NLGN2Q8NFZ4 835 aa12.66□□□□□ -0.38
USP3-216ENST00000559873 DDX19BQ9UMR2 479 aa12.66□□□□□ -0.38
USP3-216ENST00000559873 KIAA1551Q9HCM1 1747 aa12.65□□□□□ -0.38
USP3-216ENST00000559873 CHRNA5P30532 468 aa12.65□□□□□ -0.38
USP3-216ENST00000559873 ALDH1B1P30837 517 aa12.65□□□□□ -0.38
USP3-216ENST00000559873 SF3B3Q15393 1217 aaKnown RBP12.65□□□□□ -0.38
USP3-216ENST00000559873 DALRD3Q5D0E6 543 aaKnown RBP12.65□□□□□ -0.38
USP3-216ENST00000559873 ZNF622Q969S3 477 aaKnown RBP eCLIP12.65□□□□□ -0.38
USP3-216ENST00000559873 A0A0G2JLW4 131 aa12.64□□□□□ -0.39
USP3-216ENST00000559873 NBPF7P0C2Y1 421 aaPredicted RBP12.64□□□□□ -0.39
USP3-216ENST00000559873 HOXA10P31260 410 aaPredicted RBP12.64□□□□□ -0.39
USP3-216ENST00000559873 CASP7P55210 303 aa12.64□□□□□ -0.39
USP3-216ENST00000559873 MVPQ14764 893 aaKnown RBP12.64□□□□□ -0.39
USP3-216ENST00000559873 SYNE4Q8N205 404 aa12.64□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms