RNA–Protein interactions for RNA: ENST00000558347.5

TPM1-212, Transcript of tropomyosin 1, humanhuman

TSL 5

Gene TPM1, Length 1,525 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1-212ENST00000558347 DDX21Q9NR30 783 aaKnown RBP eCLIP13.23□□□□□ -0.29
TPM1-212ENST00000558347 CHPF2Q9P2E5 772 aa13.23□□□□□ -0.29
TPM1-212ENST00000558347 IBTKQ9P2D0 1353 aaPredicted RBP13.23□□□□□ -0.29
TPM1-212ENST00000558347 ANKRD36CQ5JPF3 1778 aa13.22□□□□□ -0.29
TPM1-212ENST00000558347 NTSR2O95665 410 aa13.22□□□□□ -0.29
TPM1-212ENST00000558347 CEP350Q5VT06 3117 aa13.22□□□□□ -0.29
TPM1-212ENST00000558347 DUSP27Q5VZP5 1158 aa13.22□□□□□ -0.29
TPM1-212ENST00000558347 IFT57Q9NWB7 429 aa13.22□□□□□ -0.29
TPM1-212ENST00000558347 RIC1Q4ADV7 1423 aa13.21□□□□□ -0.29
TPM1-212ENST00000558347 GNAI1P63096 354 aa13.21□□□□□ -0.29
TPM1-212ENST00000558347 WWC1Q8IX03 1113 aa13.21□□□□□ -0.29
TPM1-212ENST00000558347 C7orf43Q8WVR3 580 aa13.21□□□□□ -0.29
TPM1-212ENST00000558347 SALL2Q9Y467 1007 aaPredicted RBP13.21□□□□□ -0.29
TPM1-212ENST00000558347 DICER1Q9UPY3 1922 aaKnown RBP13.2□□□□□ -0.3
TPM1-212ENST00000558347 CRY2Q49AN0 593 aa13.2□□□□□ -0.3
TPM1-212ENST00000558347 WDR63Q8IWG1 891 aa13.2□□□□□ -0.3
TPM1-212ENST00000558347 LTBP3Q9NS15 1303 aa13.19□□□□□ -0.3
TPM1-212ENST00000558347 ZC3H4Q9UPT8 1303 aaKnown RBP13.19□□□□□ -0.3
TPM1-212ENST00000558347 CALD1Q05682 793 aaKnown RBP13.19□□□□□ -0.3
TPM1-212ENST00000558347 GOLGA2Q08379 1002 aa13.19□□□□□ -0.3
TPM1-212ENST00000558347 PARP10Q53GL7 1025 aa13.19□□□□□ -0.3
TPM1-212ENST00000558347 OLFM4Q6UX06 510 aa13.19□□□□□ -0.3
TPM1-212ENST00000558347 C3orf67Q6ZVT6 689 aa13.19□□□□□ -0.3
TPM1-212ENST00000558347 PPP1R42Q7Z4L9 355 aa13.19□□□□□ -0.3
TPM1-212ENST00000558347 ELL2O00472 640 aaPredicted RBP13.18□□□□□ -0.3
TPM1-212ENST00000558347 B4GALNT3Q6L9W6 998 aa13.18□□□□□ -0.3
TPM1-212ENST00000558347 TAOK3Q9H2K8 898 aa13.18□□□□□ -0.3
TPM1-212ENST00000558347 DBF4Q9UBU7 674 aaPredicted RBP13.18□□□□□ -0.3
TPM1-212ENST00000558347 KDM2BQ8NHM5 1336 aa13.18□□□□□ -0.3
TPM1-212ENST00000558347 ALDH1B1P30837 517 aa13.18□□□□□ -0.3
TPM1-212ENST00000558347 TCIRG1Q13488 830 aa13.18□□□□□ -0.3
TPM1-212ENST00000558347 CCDC93Q567U6 631 aa13.18□□□□□ -0.3
TPM1-212ENST00000558347 SOGA3Q5TF21 947 aa13.18□□□□□ -0.3
TPM1-212ENST00000558347 TRMT2AQ8IZ69 625 aaKnown RBP13.18□□□□□ -0.3
TPM1-212ENST00000558347 C8orf58Q8NAV2 365 aa13.18□□□□□ -0.3
TPM1-212ENST00000558347 UTP14AQ9BVJ6 771 aaKnown RBP13.18□□□□□ -0.3
TPM1-212ENST00000558347 RRAGCQ9HB90 399 aa13.18□□□□□ -0.3
TPM1-212ENST00000558347 LAMB2P55268 1798 aa13.17□□□□□ -0.3
TPM1-212ENST00000558347 GLTPD2A6NH11 291 aa13.17□□□□□ -0.3
TPM1-212ENST00000558347 SLFN5Q08AF3 891 aa13.17□□□□□ -0.3
TPM1-212ENST00000558347 HSP90AB3PQ58FF7 597 aa13.17□□□□□ -0.3
TPM1-212ENST00000558347 SLC51AQ86UW1 340 aa13.17□□□□□ -0.3
TPM1-212ENST00000558347 NLRP10Q86W26 655 aa13.17□□□□□ -0.3
TPM1-212ENST00000558347 TSR2Q969E8 191 aaKnown RBP13.17□□□□□ -0.3
TPM1-212ENST00000558347 ZNF428Q96B54 188 aa13.17□□□□□ -0.3
TPM1-212ENST00000558347 SNED1Q8TER0 1413 aa13.17□□□□□ -0.3
TPM1-212ENST00000558347 IL16Q14005 1332 aa13.16□□□□□ -0.3
TPM1-212ENST00000558347 E9PSI1 815 aa13.16□□□□□ -0.3
TPM1-212ENST00000558347 TOMM70O94826 608 aa13.16□□□□□ -0.3
TPM1-212ENST00000558347 HOXA10P31260 410 aaPredicted RBP13.16□□□□□ -0.3
TPM1-212ENST00000558347 ANKRD13DQ6ZTN6 518 aa13.16□□□□□ -0.3
TPM1-212ENST00000558347 SYNE4Q8N205 404 aa13.16□□□□□ -0.3
TPM1-212ENST00000558347 PLBD2Q8NHP8 589 aa13.16□□□□□ -0.3
TPM1-212ENST00000558347 RPGRQ92834 1020 aaKnown RBP13.16□□□□□ -0.3
TPM1-212ENST00000558347 CDCA7LQ96GN5 454 aa13.16□□□□□ -0.3
TPM1-212ENST00000558347 HYPKQ9NX55 129 aa13.16□□□□□ -0.3
TPM1-212ENST00000558347 SLC10A5Q5PT55 438 aa13.15□□□□□ -0.3
TPM1-212ENST00000558347 TSPYL6Q8N831 410 aa13.15□□□□□ -0.3
TPM1-212ENST00000558347 NLRP3Q96P20 1036 aa13.15□□□□□ -0.3
TPM1-212ENST00000558347 PHAXQ9H814 394 aaKnown RBP13.15□□□□□ -0.3
TPM1-212ENST00000558347 FKBP4Q02790 459 aaKnown RBP eCLIP13.14□□□□□ -0.31
TPM1-212ENST00000558347 ISCA1Q9BUE6 129 aa13.14□□□□□ -0.31
TPM1-212ENST00000558347 TRMT112Q9UI30 125 aaKnown RBP13.14□□□□□ -0.31
TPM1-212ENST00000558347 DDX60Q8IY21 1712 aaKnown RBP13.14□□□□□ -0.31
TPM1-212ENST00000558347 WDR90Q96KV7 1748 aa13.14□□□□□ -0.31
TPM1-212ENST00000558347 POTECB2RU33 542 aa13.13□□□□□ -0.31
TPM1-212ENST00000558347 ATP5J2-PTCD1G3V325 749 aa13.13□□□□□ -0.31
TPM1-212ENST00000558347 HCLS1P14317 486 aaPredicted RBP13.13□□□□□ -0.31
TPM1-212ENST00000558347 HSPA6P17066 643 aa13.13□□□□□ -0.31
TPM1-212ENST00000558347 RRP1P56182 461 aaKnown RBP13.13□□□□□ -0.31
TPM1-212ENST00000558347 RTKN2Q8IZC4 609 aa13.13□□□□□ -0.31
TPM1-212ENST00000558347 RBM17Q96I25 401 aaKnown RBP13.13□□□□□ -0.31
TPM1-212ENST00000558347 CCDC136Q96JN2 1154 aa13.13□□□□□ -0.31
TPM1-212ENST00000558347 CRAMP1Q96RY5 1269 aa13.13□□□□□ -0.31
TPM1-212ENST00000558347 ZNF277Q9NRM2 450 aaPredicted RBP13.13□□□□□ -0.31
TPM1-212ENST00000558347 SH3TC1Q8TE82 1336 aa13.13□□□□□ -0.31
TPM1-212ENST00000558347 TCERG1O14776 1098 aaKnown RBP13.13□□□□□ -0.31
TPM1-212ENST00000558347 RBM46Q8TBY0 533 aaKnown RBP13.13□□□□□ -0.31
TPM1-212ENST00000558347 SPINK5Q9NQ38 1064 aaPredicted RBP13.13□□□□□ -0.31
TPM1-212ENST00000558347 ABCC4O15439 1325 aa13.12□□□□□ -0.31
TPM1-212ENST00000558347 PPEF1O14829 653 aaPredicted RBP13.12□□□□□ -0.31
TPM1-212ENST00000558347 C16orf71Q8IYS4 520 aaPredicted RBP13.12□□□□□ -0.31
TPM1-212ENST00000558347 RCAN3Q9UKA8 241 aa13.12□□□□□ -0.31
TPM1-212ENST00000558347 TAF1P21675 1872 aa13.12□□□□□ -0.31
TPM1-212ENST00000558347 DDNO94850 711 aaPredicted RBP13.11□□□□□ -0.31
TPM1-212ENST00000558347 VEGFAP15692 232 aaPredicted RBP13.11□□□□□ -0.31
TPM1-212ENST00000558347 CCDC30Q5VVM6 783 aa13.11□□□□□ -0.31
TPM1-212ENST00000558347 DPY19L2Q6NUT2 758 aa13.11□□□□□ -0.31
TPM1-212ENST00000558347 RIC3Q7Z5B4 369 aa13.11□□□□□ -0.31
TPM1-212ENST00000558347 FAM89AQ96GI7 184 aa13.11□□□□□ -0.31
TPM1-212ENST00000558347 PSMD1Q99460 953 aa13.11□□□□□ -0.31
TPM1-212ENST00000558347 COL4A5P29400 1685 aa13.1□□□□□ -0.31
TPM1-212ENST00000558347 IARSP41252 1262 aaKnown RBP13.1□□□□□ -0.31
TPM1-212ENST00000558347 TWISTNBQ3B726 338 aaPredicted RBP13.1□□□□□ -0.31
TPM1-212ENST00000558347 CC2D2BQ6DHV5 1058 aa13.1□□□□□ -0.31
TPM1-212ENST00000558347 MYH16Q9H6N6 1097 aa13.1□□□□□ -0.31
TPM1-212ENST00000558347 ZNF541Q9H0D2 1346 aa13.1□□□□□ -0.31
TPM1-212ENST00000558347 TRIM28Q13263 835 aaKnown RBP13.09□□□□□ -0.31
TPM1-212ENST00000558347 RTL5Q5HYW3 569 aaPredicted RBP13.09□□□□□ -0.31
TPM1-212ENST00000558347 MYD88Q99836 296 aa13.09□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 42.1 ms