RNA–Protein interactions for RNA: ENST00000555690.5

PPP4R4-204, Transcript of protein phosphatase 4 regulatory subunit 4, human

TSL 3

Gene PPP4R4, Length 680 nt, Biotype processed transcript.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PPP4R4-204	ENST00000555690	NTSR2	O95665	410 aa		32.05	■■■□□ 2.72
PPP4R4-204	ENST00000555690	HOXA10	P31260	410 aa	Predicted RBP	32.05	■■■□□ 2.72
PPP4R4-204	ENST00000555690	NECTIN2	Q92692	538 aa		32.04	■■■□□ 2.72
PPP4R4-204	ENST00000555690	RIC1	Q4ADV7	1423 aa		32.03	■■■□□ 2.72
PPP4R4-204	ENST00000555690	C3orf67	Q6ZVT6	689 aa		32.03	■■■□□ 2.72
PPP4R4-204	ENST00000555690	PPP1R42	Q7Z4L9	355 aa		32.03	■■■□□ 2.72
PPP4R4-204	ENST00000555690	PSMD1	Q99460	953 aa		32.03	■■■□□ 2.72
PPP4R4-204	ENST00000555690	TAF1D	Q9H5J8	278 aa	Predicted RBP	32.03	■■■□□ 2.72
PPP4R4-204	ENST00000555690	PARP10	Q53GL7	1025 aa		32.02	■■■□□ 2.72
PPP4R4-204	ENST00000555690	SNED1	Q8TER0	1413 aa		32.01	■■■□□ 2.72
PPP4R4-204	ENST00000555690	CC2D2B	Q6DHV5	1058 aa		32.01	■■■□□ 2.71
PPP4R4-204	ENST00000555690	RBM17	Q96I25	401 aa	Known RBP	32.01	■■■□□ 2.71
PPP4R4-204	ENST00000555690	FZD9	O00144	591 aa		32	■■■□□ 2.71
PPP4R4-204	ENST00000555690	CRAMP1	Q96RY5	1269 aa		32	■■■□□ 2.71
PPP4R4-204	ENST00000555690	TCERG1	O14776	1098 aa	Known RBP	31.99	■■■□□ 2.71
PPP4R4-204	ENST00000555690	AIMP1	Q12904	312 aa	Known RBP	31.99	■■■□□ 2.71
PPP4R4-204	ENST00000555690	WDR43	Q15061	677 aa	Known RBP eCLIP	31.99	■■■□□ 2.71
PPP4R4-204	ENST00000555690	KRT24	Q2M2I5	525 aa		31.99	■■■□□ 2.71
PPP4R4-204	ENST00000555690	COPS6	Q7L5N1	327 aa		31.99	■■■□□ 2.71
PPP4R4-204	ENST00000555690	SLC51A	Q86UW1	340 aa		31.99	■■■□□ 2.71
PPP4R4-204	ENST00000555690	RUNDC1	Q96C34	613 aa		31.99	■■■□□ 2.71
PPP4R4-204	ENST00000555690	UTP14A	Q9BVJ6	771 aa	Known RBP	31.99	■■■□□ 2.71
PPP4R4-204	ENST00000555690	CHL1	O00533	1208 aa		31.98	■■■□□ 2.71
PPP4R4-204	ENST00000555690	LDHD	Q86WU2	507 aa		31.98	■■■□□ 2.71
PPP4R4-204	ENST00000555690	JDP2	Q8WYK2	163 aa		31.98	■■■□□ 2.71
PPP4R4-204	ENST00000555690	HACL1	Q9UJ83	578 aa		31.98	■■■□□ 2.71
PPP4R4-204	ENST00000555690	TRIM35	Q9UPQ4	493 aa		31.98	■■■□□ 2.71
PPP4R4-204	ENST00000555690	LAS1L	Q9Y4W2	734 aa	Known RBP	31.98	■■■□□ 2.71
PPP4R4-204	ENST00000555690	SCN4A	P35499	1836 aa		31.98	■■■□□ 2.71
PPP4R4-204	ENST00000555690	PPEF1	O14829	653 aa	Predicted RBP	31.97	■■■□□ 2.71
PPP4R4-204	ENST00000555690	EAPP	Q56P03	285 aa	Predicted RBP	31.97	■■■□□ 2.71
PPP4R4-204	ENST00000555690	XAGE3	Q8WTP9	111 aa		31.97	■■■□□ 2.71
PPP4R4-204	ENST00000555690	NLRP3	Q96P20	1036 aa		31.97	■■■□□ 2.71
PPP4R4-204	ENST00000555690	ADAMTS8	Q9UP79	889 aa		31.96	■■■□□ 2.71
PPP4R4-204	ENST00000555690	SLC10A5	Q5PT55	438 aa		31.95	■■■□□ 2.71
PPP4R4-204	ENST00000555690	CREBZF	Q9NS37	354 aa		31.95	■■■□□ 2.71
PPP4R4-204	ENST00000555690	GRIPAP1	Q4V328	841 aa		31.94	■■■□□ 2.7
PPP4R4-204	ENST00000555690	GPC2	Q8N158	579 aa		31.94	■■■□□ 2.7
PPP4R4-204	ENST00000555690	RNF123	Q5XPI4	1314 aa		31.94	■■■□□ 2.7
PPP4R4-204	ENST00000555690	EPHX2	P34913	555 aa		31.93	■■■□□ 2.7
PPP4R4-204	ENST00000555690	COL13A1	Q5TAT6	717 aa	Predicted RBP	31.93	■■■□□ 2.7
PPP4R4-204	ENST00000555690	DDX21	Q9NR30	783 aa	Known RBP eCLIP	31.93	■■■□□ 2.7
PPP4R4-204	ENST00000555690	HSP90AB3P	Q58FF7	597 aa		31.92	■■■□□ 2.7
PPP4R4-204	ENST00000555690	CLEC11A	Q9Y240	323 aa		31.92	■■■□□ 2.7
PPP4R4-204	ENST00000555690	NLRP10	Q86W26	655 aa		31.91	■■■□□ 2.7
PPP4R4-204	ENST00000555690	LARGE2	Q8N3Y3	721 aa		31.91	■■■□□ 2.7
PPP4R4-204	ENST00000555690	COL4A5	P29400	1685 aa		31.91	■■■□□ 2.7
PPP4R4-204	ENST00000555690	PASK	Q96RG2	1323 aa		31.91	■■■□□ 2.7
PPP4R4-204	ENST00000555690	EIF6	P56537	245 aa	Known RBP	31.9	■■■□□ 2.7
PPP4R4-204	ENST00000555690	TCIRG1	Q13488	830 aa		31.9	■■■□□ 2.7
PPP4R4-204	ENST00000555690	MKRN1	Q9UHC7	482 aa	Known RBP	31.9	■■■□□ 2.7
PPP4R4-204	ENST00000555690	GJA3	Q9Y6H8	435 aa		31.9	■■■□□ 2.7
PPP4R4-204	ENST00000555690	HCLS1	P14317	486 aa	Predicted RBP	31.89	■■■□□ 2.7
PPP4R4-204	ENST00000555690	CHPF2	Q9P2E5	772 aa		31.89	■■■□□ 2.7
PPP4R4-204	ENST00000555690	ITGBL1	O95965	494 aa	Predicted RBP	31.88	■■■□□ 2.69
PPP4R4-204	ENST00000555690	HSPA1A	P0DMV8	641 aa	Known RBP	31.88	■■■□□ 2.69
PPP4R4-204	ENST00000555690	HSPA1B	P0DMV9	641 aa	Known RBP	31.88	■■■□□ 2.69
PPP4R4-204	ENST00000555690	PNMA8A	Q86V59	439 aa	Predicted RBP	31.88	■■■□□ 2.69
PPP4R4-204	ENST00000555690	TMX4	Q9H1E5	349 aa	Predicted RBP	31.88	■■■□□ 2.69
PPP4R4-204	ENST00000555690	TRMT112	Q9UI30	125 aa	Known RBP	31.88	■■■□□ 2.69
PPP4R4-204	ENST00000555690	ATP6V0A2	Q9Y487	856 aa		31.88	■■■□□ 2.69
PPP4R4-204	ENST00000555690	ABCC4	O15439	1325 aa		31.88	■■■□□ 2.69
PPP4R4-204	ENST00000555690	HDGFL1	Q5TGJ6	251 aa		31.87	■■■□□ 2.69
PPP4R4-204	ENST00000555690	ZNF428	Q96B54	188 aa		31.86	■■■□□ 2.69
PPP4R4-204	ENST00000555690	PRKRIP1	Q9H875	184 aa	Predicted RBP	31.86	■■■□□ 2.69
PPP4R4-204	ENST00000555690	PPIP5K2	O43314	1243 aa		31.84	■■■□□ 2.69
PPP4R4-204	ENST00000555690	MAP1S	Q66K74	1059 aa	Predicted RBP	31.84	■■■□□ 2.69
PPP4R4-204	ENST00000555690	ANKRD36C	Q5JPF3	1778 aa		31.84	■■■□□ 2.69
PPP4R4-204	ENST00000555690	HOXB7	P09629	217 aa		31.83	■■■□□ 2.69
PPP4R4-204	ENST00000555690	NIM1K	Q8IY84	436 aa		31.83	■■■□□ 2.69
PPP4R4-204	ENST00000555690	CNTROB	Q8N137	903 aa		31.83	■■■□□ 2.69
PPP4R4-204	ENST00000555690	CFAP44	Q96MT7	982 aa		31.83	■■■□□ 2.69
PPP4R4-204	ENST00000555690	SH3TC1	Q8TE82	1336 aa		31.82	■■■□□ 2.68
PPP4R4-204	ENST00000555690	ADAMTSL1	Q8N6G6	1762 aa		31.82	■■■□□ 2.68
PPP4R4-204	ENST00000555690	BBOX1	O75936	387 aa		31.82	■■■□□ 2.68
PPP4R4-204	ENST00000555690	AOC3	Q16853	763 aa		31.82	■■■□□ 2.68
PPP4R4-204	ENST00000555690	DBF4	Q9UBU7	674 aa	Predicted RBP	31.82	■■■□□ 2.68
PPP4R4-204	ENST00000555690	TMEM88B	A6NKF7	163 aa		31.81	■■■□□ 2.68
PPP4R4-204	ENST00000555690	LMOD1	P29536	600 aa	Predicted RBP	31.81	■■■□□ 2.68
PPP4R4-204	ENST00000555690	ANKRD13D	Q6ZTN6	518 aa		31.81	■■■□□ 2.68
PPP4R4-204	ENST00000555690	PLBD2	Q8NHP8	589 aa		31.81	■■■□□ 2.68
PPP4R4-204	ENST00000555690	EPS15	P42566	896 aa		31.8	■■■□□ 2.68
PPP4R4-204	ENST00000555690	SCNN1D	P51172	638 aa		31.8	■■■□□ 2.68
PPP4R4-204	ENST00000555690	DUSP27	Q5VZP5	1158 aa		31.8	■■■□□ 2.68
PPP4R4-204	ENST00000555690	DDX46	Q7L014	1031 aa	Known RBP	31.8	■■■□□ 2.68
PPP4R4-204	ENST00000555690	SP8	Q8IXZ3	490 aa		31.8	■■■□□ 2.68
PPP4R4-204	ENST00000555690	MBIP	Q9NS73	344 aa		31.8	■■■□□ 2.68
PPP4R4-204	ENST00000555690	CNTNAP1	P78357	1384 aa		31.8	■■■□□ 2.68
PPP4R4-204	ENST00000555690	DPP8	Q6V1X1	898 aa	Predicted RBP	31.78	■■■□□ 2.68
PPP4R4-204	ENST00000555690	RTFDC1	Q9BY42	306 aa	Predicted RBP	31.78	■■■□□ 2.68
PPP4R4-204	ENST00000555690	VPS33B	Q9H267	617 aa		31.78	■■■□□ 2.68
PPP4R4-204	ENST00000555690	LAMB2	P55268	1798 aa		31.78	■■■□□ 2.68
PPP4R4-204	ENST00000555690	APAF1	O14727	1248 aa		31.77	■■■□□ 2.68
PPP4R4-204	ENST00000555690	MPND	Q8N594	471 aa		31.77	■■■□□ 2.68
PPP4R4-204	ENST00000555690	SUPT20H	Q8NEM7	779 aa		31.77	■■■□□ 2.68
PPP4R4-204	ENST00000555690	LTBP1	Q14766	1721 aa		31.77	■■■□□ 2.68
PPP4R4-204	ENST00000555690	ATP5J2-PTCD1	G3V325	749 aa		31.76	■■■□□ 2.67
PPP4R4-204	ENST00000555690	GRAP	Q13588	217 aa		31.76	■■■□□ 2.67
PPP4R4-204	ENST00000555690	GRAPL	Q8TC17	118 aa	Predicted RBP	31.76	■■■□□ 2.67
PPP4R4-204	ENST00000555690	ISCA1	Q9BUE6	129 aa		31.76	■■■□□ 2.67

Retrieved 100 of 20,778 RNA–protein pairs in 37.9 ms