RNA–Protein interactions for RNA: ENST00000554467.5

SHMT2-212, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 3,416 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-212ENST00000554467 PTPN12Q05209 780 aaKnown RBP14.19□□□□□ -0.14
SHMT2-212ENST00000554467 TFCP2Q12800 502 aa14.19□□□□□ -0.14
SHMT2-212ENST00000554467 EDC3Q96F86 508 aaKnown RBP14.19□□□□□ -0.14
SHMT2-212ENST00000554467 ECHDC1Q9NTX5 307 aa14.19□□□□□ -0.14
SHMT2-212ENST00000554467 TNS2Q63HR2 1409 aa14.19□□□□□ -0.14
SHMT2-212ENST00000554467 UBR2Q8IWV8 1755 aa14.19□□□□□ -0.14
SHMT2-212ENST00000554467 TUBGCP6Q96RT7 1819 aa14.19□□□□□ -0.14
SHMT2-212ENST00000554467 ERC1Q8IUD2 1116 aa14.19□□□□□ -0.14
SHMT2-212ENST00000554467 DISP2A7MBM2 1401 aa14.19□□□□□ -0.14
SHMT2-212ENST00000554467 LAMB4A4D0S4 1761 aa14.19□□□□□ -0.14
SHMT2-212ENST00000554467 COL14A1Q05707 1796 aaKnown RBP14.19□□□□□ -0.14
SHMT2-212ENST00000554467 UBAP1LF5GYI3 381 aa14.18□□□□□ -0.14
SHMT2-212ENST00000554467 CNTROBQ8N137 903 aa14.18□□□□□ -0.14
SHMT2-212ENST00000554467 AHDC1Q5TGY3 1603 aaPredicted RBP14.18□□□□□ -0.14
SHMT2-212ENST00000554467 RFX5P48382 616 aaPredicted RBP14.18□□□□□ -0.14
SHMT2-212ENST00000554467 RABEP1Q15276 862 aa14.18□□□□□ -0.14
SHMT2-212ENST00000554467 DDB1Q16531 1140 aa14.18□□□□□ -0.14
SHMT2-212ENST00000554467 PHLPP1O60346 1717 aa14.18□□□□□ -0.14
SHMT2-212ENST00000554467 GLRX3O76003 335 aaKnown RBP14.18□□□□□ -0.14
SHMT2-212ENST00000554467 FOXO4P98177 505 aa14.18□□□□□ -0.14
SHMT2-212ENST00000554467 HLFQ16534 295 aa14.18□□□□□ -0.14
SHMT2-212ENST00000554467 FAM89AQ96GI7 184 aa14.18□□□□□ -0.14
SHMT2-212ENST00000554467 ZBTB1Q9Y2K1 713 aa14.18□□□□□ -0.14
SHMT2-212ENST00000554467 AOX1Q06278 1338 aa14.17□□□□□ -0.14
SHMT2-212ENST00000554467 UPF3BQ9BZI7 483 aaKnown RBP14.17□□□□□ -0.14
SHMT2-212ENST00000554467 EP400Q96L91 3159 aa14.17□□□□□ -0.14
SHMT2-212ENST00000554467 ESPNB1AK53 854 aa14.17□□□□□ -0.14
SHMT2-212ENST00000554467 TBC1D2BQ9UPU7 963 aa14.17□□□□□ -0.14
SHMT2-212ENST00000554467 SPATA31A1Q5TZJ5 1347 aa14.17□□□□□ -0.14
SHMT2-212ENST00000554467 H7C1W4 665 aa14.16□□□□□ -0.14
SHMT2-212ENST00000554467 STARD3NLO95772 234 aa14.16□□□□□ -0.14
SHMT2-212ENST00000554467 NEK4P51957 841 aa14.16□□□□□ -0.14
SHMT2-212ENST00000554467 C8orf37Q96NL8 207 aa14.16□□□□□ -0.14
SHMT2-212ENST00000554467 CHMP5Q9NZZ3 219 aa14.16□□□□□ -0.14
SHMT2-212ENST00000554467 ITGB4P16144 1822 aa14.16□□□□□ -0.14
SHMT2-212ENST00000554467 GPATCH3Q96I76 525 aa14.16□□□□□ -0.14
SHMT2-212ENST00000554467 PAPPAQ13219 1627 aa14.16□□□□□ -0.14
SHMT2-212ENST00000554467 TOM1O60784 492 aa14.16□□□□□ -0.14
SHMT2-212ENST00000554467 CHGBP05060 677 aa14.16□□□□□ -0.14
SHMT2-212ENST00000554467 MARCH10Q8NA82 808 aaPredicted RBP14.16□□□□□ -0.14
SHMT2-212ENST00000554467 DIAPH3Q9NSV4 1193 aa14.16□□□□□ -0.14
SHMT2-212ENST00000554467 BCL9O00512 1426 aa14.16□□□□□ -0.14
SHMT2-212ENST00000554467 AK9Q5TCS8 1911 aa14.16□□□□□ -0.14
SHMT2-212ENST00000554467 KIF6Q6ZMV9 814 aa14.15□□□□□ -0.14
SHMT2-212ENST00000554467 TTC41PQ6P2S7 1318 aa14.15□□□□□ -0.14
SHMT2-212ENST00000554467 MCM4P33991 863 aa14.15□□□□□ -0.14
SHMT2-212ENST00000554467 KCNQ4P56696 695 aa14.15□□□□□ -0.14
SHMT2-212ENST00000554467 FAM98CQ17RN3 349 aaKnown RBP14.15□□□□□ -0.14
SHMT2-212ENST00000554467 RABL6Q3YEC7 729 aaPredicted RBP14.15□□□□□ -0.14
SHMT2-212ENST00000554467 PDCL3Q9H2J4 239 aa14.15□□□□□ -0.14
SHMT2-212ENST00000554467 COPRSQ9NQ92 184 aa14.15□□□□□ -0.14
SHMT2-212ENST00000554467 DBNLQ9UJU6 430 aaKnown RBP14.15□□□□□ -0.14
SHMT2-212ENST00000554467 FAM177BA6PVY3 158 aa14.15□□□□□ -0.14
SHMT2-212ENST00000554467 KCNQ2O43526 872 aa14.15□□□□□ -0.14
SHMT2-212ENST00000554467 RBM10P98175 930 aaKnown RBP14.15□□□□□ -0.14
SHMT2-212ENST00000554467 LRRC24Q50LG9 513 aa14.15□□□□□ -0.14
SHMT2-212ENST00000554467 FAM227BQ96M60 508 aa14.15□□□□□ -0.14
SHMT2-212ENST00000554467 PUS3Q9BZE2 481 aaKnown RBP14.15□□□□□ -0.14
SHMT2-212ENST00000554467 CYP19A1P11511 503 aaPredicted RBP14.14□□□□□ -0.15
SHMT2-212ENST00000554467 DBNDD2Q9BQY9 259 aa14.14□□□□□ -0.15
SHMT2-212ENST00000554467 SGSM2O43147 1006 aa14.14□□□□□ -0.15
SHMT2-212ENST00000554467 TCIRG1Q13488 830 aa14.14□□□□□ -0.15
SHMT2-212ENST00000554467 CCDC191Q8NCU4 936 aa14.14□□□□□ -0.15
SHMT2-212ENST00000554467 NEUROD6Q96NK8 337 aa14.14□□□□□ -0.15
SHMT2-212ENST00000554467 LARP6Q9BRS8 491 aaKnown RBP14.14□□□□□ -0.15
SHMT2-212ENST00000554467 USP42Q9H9J4 1324 aaKnown RBP14.14□□□□□ -0.15
SHMT2-212ENST00000554467 TNNI3KQ59H18 835 aa14.13□□□□□ -0.15
SHMT2-212ENST00000554467 FPGT-TNNI3KV9GXZ4 949 aa14.13□□□□□ -0.15
SHMT2-212ENST00000554467 PLCH1Q4KWH8 1693 aa14.13□□□□□ -0.15
SHMT2-212ENST00000554467 TIMM10P62072 90 aa14.13□□□□□ -0.15
SHMT2-212ENST00000554467 ZGPATQ8N5A5 531 aaKnown RBP14.13□□□□□ -0.15
SHMT2-212ENST00000554467 DNAJC2Q99543 621 aaKnown RBP14.13□□□□□ -0.15
SHMT2-212ENST00000554467 PTH1RQ03431 593 aa14.13□□□□□ -0.15
SHMT2-212ENST00000554467 FAM182BQ5T319 152 aa14.13□□□□□ -0.15
SHMT2-212ENST00000554467 NGLY1Q96IV0 654 aa14.13□□□□□ -0.15
SHMT2-212ENST00000554467 ST18O60284 1047 aa14.12□□□□□ -0.15
SHMT2-212ENST00000554467 DTNBO60941 627 aa14.12□□□□□ -0.15
SHMT2-212ENST00000554467 CPA1P15085 419 aa14.12□□□□□ -0.15
SHMT2-212ENST00000554467 FSD1Q9BTV5 496 aa14.12□□□□□ -0.15
SHMT2-212ENST00000554467 COL22A1Q8NFW1 1626 aaPredicted RBP14.12□□□□□ -0.15
SHMT2-212ENST00000554467 MCCP23508 829 aa14.12□□□□□ -0.15
SHMT2-212ENST00000554467 DDIT3P35638 169 aa14.12□□□□□ -0.15
SHMT2-212ENST00000554467 ISCA1Q9BUE6 129 aa14.12□□□□□ -0.15
SHMT2-212ENST00000554467 NUP188Q5SRE5 1749 aa14.12□□□□□ -0.15
SHMT2-212ENST00000554467 RASEFQ8IZ41 740 aa14.12□□□□□ -0.15
SHMT2-212ENST00000554467 SPATA31A5Q5VU36 1347 aa14.11□□□□□ -0.15
SHMT2-212ENST00000554467 SPATA31A7Q8IWB4 1347 aa14.11□□□□□ -0.15
SHMT2-212ENST00000554467 A0A0U1RQG5 324 aaPredicted RBP14.11□□□□□ -0.15
SHMT2-212ENST00000554467 TRAK2O60296 914 aa14.11□□□□□ -0.15
SHMT2-212ENST00000554467 MRE11P49959 708 aa14.11□□□□□ -0.15
SHMT2-212ENST00000554467 NMIQ13287 307 aaPredicted RBP14.11□□□□□ -0.15
SHMT2-212ENST00000554467 SMIM5Q71RC9 77 aa14.11□□□□□ -0.15
SHMT2-212ENST00000554467 ATG9AQ7Z3C6 839 aa14.11□□□□□ -0.15
SHMT2-212ENST00000554467 TEX13AQ9BXU3 409 aaPredicted RBP14.11□□□□□ -0.15
SHMT2-212ENST00000554467 LSG1Q9H089 658 aaKnown RBP14.11□□□□□ -0.15
SHMT2-212ENST00000554467 GRPEL1Q9HAV7 217 aa14.11□□□□□ -0.15
SHMT2-212ENST00000554467 ATP6V1AP38606 617 aa14.11□□□□□ -0.15
SHMT2-212ENST00000554467 PKP1Q13835 747 aa14.11□□□□□ -0.15
SHMT2-212ENST00000554467 SLFNL1Q499Z3 407 aa14.11□□□□□ -0.15
SHMT2-212ENST00000554467 KIAA1211Q6ZU35 1233 aa14.11□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms