RNA–Protein interactions for RNA: ENST00000553868.1

SHMT2-208, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 941 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-208ENST00000553868 DLG5Q8TDM6 1919 aa18.64■□□□□ 0.57
SHMT2-208ENST00000553868 CT47B1P0C2W7 299 aaPredicted RBP18.63■□□□□ 0.57
SHMT2-208ENST00000553868 CANXP27824 592 aaKnown RBP18.62■□□□□ 0.57
SHMT2-208ENST00000553868 OLFM4Q6UX06 510 aa18.62■□□□□ 0.57
SHMT2-208ENST00000553868 MCM10Q7L590 875 aa18.62■□□□□ 0.57
SHMT2-208ENST00000553868 THUMPD2Q9BTF0 503 aaKnown RBP18.62■□□□□ 0.57
SHMT2-208ENST00000553868 LAS1LQ9Y4W2 734 aaKnown RBP18.62■□□□□ 0.57
SHMT2-208ENST00000553868 FANCIQ9NVI1 1328 aa18.62■□□□□ 0.57
SHMT2-208ENST00000553868 SLC39A6Q13433 755 aa18.61■□□□□ 0.57
SHMT2-208ENST00000553868 DCTN1Q14203 1278 aa18.61■□□□□ 0.57
SHMT2-208ENST00000553868 CNKSR1Q969H4 720 aa18.61■□□□□ 0.57
SHMT2-208ENST00000553868 SUPT16HQ9Y5B9 1047 aaKnown RBP18.61■□□□□ 0.57
SHMT2-208ENST00000553868 ZNF853P0CG23 659 aa18.6■□□□□ 0.57
SHMT2-208ENST00000553868 MAP2K2P36507 400 aa18.6■□□□□ 0.57
SHMT2-208ENST00000553868 C7orf43Q8WVR3 580 aa18.6■□□□□ 0.57
SHMT2-208ENST00000553868 PDZRN3Q9UPQ7 1066 aa18.6■□□□□ 0.57
SHMT2-208ENST00000553868 TLL2Q9Y6L7 1015 aa18.6■□□□□ 0.57
SHMT2-208ENST00000553868 ARFGEF2Q9Y6D5 1785 aa18.6■□□□□ 0.57
SHMT2-208ENST00000553868 TRPM7Q96QT4 1865 aa18.59■□□□□ 0.57
SHMT2-208ENST00000553868 SRGNP10124 158 aa18.59■□□□□ 0.57
SHMT2-208ENST00000553868 STYK1Q6J9G0 422 aa18.59■□□□□ 0.57
SHMT2-208ENST00000553868 BABAM1Q9NWV8 329 aa18.59■□□□□ 0.57
SHMT2-208ENST00000553868 SOGA3Q5TF21 947 aa18.58■□□□□ 0.56
SHMT2-208ENST00000553868 TSR2Q969E8 191 aaKnown RBP18.58■□□□□ 0.56
SHMT2-208ENST00000553868 SCN11AQ9UI33 1791 aa18.58■□□□□ 0.56
SHMT2-208ENST00000553868 CHL1O00533 1208 aa18.57■□□□□ 0.56
SHMT2-208ENST00000553868 CA12O43570 354 aa18.57■□□□□ 0.56
SHMT2-208ENST00000553868 FKBP4Q02790 459 aaKnown RBP eCLIP18.57■□□□□ 0.56
SHMT2-208ENST00000553868 CCDC93Q567U6 631 aa18.57■□□□□ 0.56
SHMT2-208ENST00000553868 CIAPIN1Q6FI81 312 aa18.57■□□□□ 0.56
SHMT2-208ENST00000553868 IL17REQ8NFR9 667 aa18.57■□□□□ 0.56
SHMT2-208ENST00000553868 CEMIPQ8WUJ3 1361 aa18.56■□□□□ 0.56
SHMT2-208ENST00000553868 FZD9O00144 591 aa18.56■□□□□ 0.56
SHMT2-208ENST00000553868 TEFQ10587 303 aa18.56■□□□□ 0.56
SHMT2-208ENST00000553868 MASTLQ96GX5 879 aa18.56■□□□□ 0.56
SHMT2-208ENST00000553868 MBIPQ9NS73 344 aa18.56■□□□□ 0.56
SHMT2-208ENST00000553868 RNMTO43148 476 aaKnown RBP18.55■□□□□ 0.56
SHMT2-208ENST00000553868 EXOSC9Q06265 439 aaKnown RBP18.55■□□□□ 0.56
SHMT2-208ENST00000553868 TAF7Q15545 349 aaPredicted RBP18.55■□□□□ 0.56
SHMT2-208ENST00000553868 GPC2Q8N158 579 aa18.55■□□□□ 0.56
SHMT2-208ENST00000553868 GOLGA6L2Q8N9W4 650 aaPredicted RBP18.55■□□□□ 0.56
SHMT2-208ENST00000553868 ZNF428Q96B54 188 aa18.55■□□□□ 0.56
SHMT2-208ENST00000553868 ZIC5Q96T25 663 aa18.55■□□□□ 0.56
SHMT2-208ENST00000553868 TBC1D2BQ9UPU7 963 aa18.55■□□□□ 0.56
SHMT2-208ENST00000553868 GJA3Q9Y6H8 435 aa18.55■□□□□ 0.56
SHMT2-208ENST00000553868 NPHP1O15259 732 aa18.54■□□□□ 0.56
SHMT2-208ENST00000553868 EPS15P42566 896 aa18.54■□□□□ 0.56
SHMT2-208ENST00000553868 EIF5P55010 431 aaKnown RBP18.54■□□□□ 0.56
SHMT2-208ENST00000553868 BRPF1P55201 1214 aaPredicted RBP18.54■□□□□ 0.56
SHMT2-208ENST00000553868 SAPCD2Q86UD0 394 aa18.54■□□□□ 0.56
SHMT2-208ENST00000553868 CNBD1Q8NA66 436 aa18.54■□□□□ 0.56
SHMT2-208ENST00000553868 LGR6Q9HBX8 967 aa18.54■□□□□ 0.56
SHMT2-208ENST00000553868 TSPYL4Q9UJ04 414 aa18.54■□□□□ 0.56
SHMT2-208ENST00000553868 ZNF330Q9Y3S2 320 aaPredicted RBP18.54■□□□□ 0.56
SHMT2-208ENST00000553868 SCN7AQ01118 1682 aa18.54■□□□□ 0.56
SHMT2-208ENST00000553868 SLC52A2Q9HAB3 445 aa18.53■□□□□ 0.56
SHMT2-208ENST00000553868 IARSP41252 1262 aaKnown RBP18.52■□□□□ 0.56
SHMT2-208ENST00000553868 GTF3C3Q9Y5Q9 886 aa18.52■□□□□ 0.56
SHMT2-208ENST00000553868 COL4A5P29400 1685 aa18.52■□□□□ 0.56
SHMT2-208ENST00000553868 SCNN1DP51172 638 aa18.51■□□□□ 0.55
SHMT2-208ENST00000553868 RRP1P56182 461 aaKnown RBP18.51■□□□□ 0.55
SHMT2-208ENST00000553868 ST5P78524 1137 aa18.51■□□□□ 0.55
SHMT2-208ENST00000553868 SYNE4Q8N205 404 aa18.51■□□□□ 0.55
SHMT2-208ENST00000553868 CELF2O95319 508 aaKnown RBP18.5■□□□□ 0.55
SHMT2-208ENST00000553868 SETDB2Q96T68 719 aa18.5■□□□□ 0.55
SHMT2-208ENST00000553868 LMOD1P29536 600 aaPredicted RBP18.49■□□□□ 0.55
SHMT2-208ENST00000553868 RARSP54136 660 aaKnown RBP18.49■□□□□ 0.55
SHMT2-208ENST00000553868 A0A087WZG4 1122 aa18.48■□□□□ 0.55
SHMT2-208ENST00000553868 TWISTNBQ3B726 338 aaPredicted RBP18.48■□□□□ 0.55
SHMT2-208ENST00000553868 ALDH1L2Q3SY69 923 aa18.48■□□□□ 0.55
SHMT2-208ENST00000553868 CHMP4AQ9BY43 222 aa18.48■□□□□ 0.55
SHMT2-208ENST00000553868 BTBD11A6QL63 1104 aa18.47■□□□□ 0.55
SHMT2-208ENST00000553868 ERICH6BQ5W0A0 696 aa18.47■□□□□ 0.55
SHMT2-208ENST00000553868 ZNF408Q9H9D4 720 aa18.47■□□□□ 0.55
SHMT2-208ENST00000553868 MRC1P22897 1456 aa18.46■□□□□ 0.55
SHMT2-208ENST00000553868 BCORQ6W2J9 1755 aa18.46■□□□□ 0.55
SHMT2-208ENST00000553868 NPR1P16066 1061 aa18.46■□□□□ 0.55
SHMT2-208ENST00000553868 RTKN2Q8IZC4 609 aa18.46■□□□□ 0.55
SHMT2-208ENST00000553868 GLIS2Q9BZE0 524 aaPredicted RBP18.46■□□□□ 0.55
SHMT2-208ENST00000553868 VAMP4O75379 141 aa18.45■□□□□ 0.54
SHMT2-208ENST00000553868 CAMTA2O94983 1202 aa18.45■□□□□ 0.54
SHMT2-208ENST00000553868 EIF6P56537 245 aaKnown RBP18.45■□□□□ 0.54
SHMT2-208ENST00000553868 USP50Q70EL3 339 aaPredicted RBP18.45■□□□□ 0.54
SHMT2-208ENST00000553868 VSIG10Q8N0Z9 540 aa18.45■□□□□ 0.54
SHMT2-208ENST00000553868 JDP2Q8WYK2 163 aa18.45■□□□□ 0.54
SHMT2-208ENST00000553868 SMC4Q9NTJ3 1288 aa18.45■□□□□ 0.54
SHMT2-208ENST00000553868 MIS18AQ9NYP9 233 aa18.45■□□□□ 0.54
SHMT2-208ENST00000553868 STARD3NLO95772 234 aa18.44■□□□□ 0.54
SHMT2-208ENST00000553868 HABP4Q5JVS0 413 aaKnown RBP18.44■□□□□ 0.54
SHMT2-208ENST00000553868 C8orf58Q8NAV2 365 aa18.44■□□□□ 0.54
SHMT2-208ENST00000553868 UBR2Q8IWV8 1755 aa18.44■□□□□ 0.54
SHMT2-208ENST00000553868 BCAR3O75815 825 aa18.43■□□□□ 0.54
SHMT2-208ENST00000553868 SLC51AQ86UW1 340 aa18.43■□□□□ 0.54
SHMT2-208ENST00000553868 HHIPL1Q96JK4 782 aa18.43■□□□□ 0.54
SHMT2-208ENST00000553868 KIF16BQ96L93 1317 aa18.43■□□□□ 0.54
SHMT2-208ENST00000553868 SNED1Q8TER0 1413 aa18.42■□□□□ 0.54
SHMT2-208ENST00000553868 HOXB7P09629 217 aa18.42■□□□□ 0.54
SHMT2-208ENST00000553868 MS4A1P11836 297 aa18.42■□□□□ 0.54
SHMT2-208ENST00000553868 NBPF5PQ86XG9 351 aaPredicted RBP18.42■□□□□ 0.54
SHMT2-208ENST00000553868 TSPYL6Q8N831 410 aa18.42■□□□□ 0.54
Retrieved 100 of 20,778 RNA–protein pairs in 70.8 ms