RNA–Protein interactions for RNA: ENST00000550008.6

CUX1-214, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,350 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-214ENST00000550008 CROCC2H7BZ55 1655 aa17.65■□□□□ 0.42
CUX1-214ENST00000550008 HOOK1Q9UJC3 728 aaKnown RBP17.65■□□□□ 0.42
CUX1-214ENST00000550008 MAP3K4Q9Y6R4 1608 aa17.65■□□□□ 0.42
CUX1-214ENST00000550008 GOLGA8BA8MQT2 603 aa17.65■□□□□ 0.42
CUX1-214ENST00000550008 ZNF594Q96JF6 807 aaPredicted RBP17.65■□□□□ 0.42
CUX1-214ENST00000550008 BRPF1P55201 1214 aaPredicted RBP17.65■□□□□ 0.42
CUX1-214ENST00000550008 RAB3GAP1Q15042 981 aa17.65■□□□□ 0.42
CUX1-214ENST00000550008 MAP3K11Q16584 847 aa17.65■□□□□ 0.42
CUX1-214ENST00000550008 PROSER3Q2NL68 480 aa17.65■□□□□ 0.42
CUX1-214ENST00000550008 NAT10Q9H0A0 1025 aaKnown RBP17.65■□□□□ 0.42
CUX1-214ENST00000550008 CCDC129Q6ZRS4 1044 aa17.64■□□□□ 0.41
CUX1-214ENST00000550008 FAM227BQ96M60 508 aa17.64■□□□□ 0.41
CUX1-214ENST00000550008 TPM3P06753 285 aa17.64■□□□□ 0.41
CUX1-214ENST00000550008 ZSCAN23Q3MJ62 389 aa17.64■□□□□ 0.41
CUX1-214ENST00000550008 GIMAP6Q6P9H5 292 aa17.64■□□□□ 0.41
CUX1-214ENST00000550008 CHAMP1Q96JM3 812 aa17.64■□□□□ 0.41
CUX1-214ENST00000550008 POLR3DP05423 398 aaPredicted RBP17.64■□□□□ 0.41
CUX1-214ENST00000550008 OLFM4Q6UX06 510 aa17.64■□□□□ 0.41
CUX1-214ENST00000550008 MICU3Q86XE3 530 aa17.64■□□□□ 0.41
CUX1-214ENST00000550008 DBNDD2Q9BQY9 259 aa17.63■□□□□ 0.41
CUX1-214ENST00000550008 RNF17Q9BXT8 1623 aaKnown RBP17.63■□□□□ 0.41
CUX1-214ENST00000550008 HCLS1P14317 486 aaPredicted RBP17.63■□□□□ 0.41
CUX1-214ENST00000550008 BRMS1Q9HCU9 246 aa17.63■□□□□ 0.41
CUX1-214ENST00000550008 BTG4Q9NY30 223 aa17.63■□□□□ 0.41
CUX1-214ENST00000550008 C8orf76Q96K31 380 aa17.63■□□□□ 0.41
CUX1-214ENST00000550008 NCBP3Q53F19 620 aaKnown RBP17.63■□□□□ 0.41
CUX1-214ENST00000550008 DNM1Q05193 864 aaKnown RBP17.62■□□□□ 0.41
CUX1-214ENST00000550008 FAM135BQ49AJ0 1406 aa17.62■□□□□ 0.41
CUX1-214ENST00000550008 ATP2B3Q16720 1220 aa17.62■□□□□ 0.41
CUX1-214ENST00000550008 GIGYF1O75420 1035 aaPredicted RBP17.62■□□□□ 0.41
CUX1-214ENST00000550008 MAP3K12Q12852 859 aa17.62■□□□□ 0.41
CUX1-214ENST00000550008 USP48Q86UV5 1035 aa17.62■□□□□ 0.41
CUX1-214ENST00000550008 IKQ13123 557 aaPredicted RBP17.61■□□□□ 0.41
CUX1-214ENST00000550008 CCDC183Q5T5S1 534 aa17.61■□□□□ 0.41
CUX1-214ENST00000550008 TTLL5Q6EMB2 1281 aa17.61■□□□□ 0.41
CUX1-214ENST00000550008 E9PCH4 1651 aa17.61■□□□□ 0.41
CUX1-214ENST00000550008 ZNF853P0CG23 659 aa17.61■□□□□ 0.41
CUX1-214ENST00000550008 ZSCAN22P10073 491 aaPredicted RBP17.61■□□□□ 0.41
CUX1-214ENST00000550008 TSR1Q2NL82 804 aaKnown RBP17.61■□□□□ 0.41
CUX1-214ENST00000550008 ARHGEF10O15013 1369 aa17.61■□□□□ 0.41
CUX1-214ENST00000550008 RANBP6O60518 1105 aaKnown RBP17.61■□□□□ 0.41
CUX1-214ENST00000550008 ANAPC15P60006 121 aa17.61■□□□□ 0.41
CUX1-214ENST00000550008 CREB3L3Q68CJ9 461 aa17.61■□□□□ 0.41
CUX1-214ENST00000550008 SCAND2PQ9GZW5 306 aaPredicted RBP17.61■□□□□ 0.41
CUX1-214ENST00000550008 SLC52A2Q9HAB3 445 aa17.61■□□□□ 0.41
CUX1-214ENST00000550008 SHROOM2Q13796 1616 aa17.61■□□□□ 0.41
CUX1-214ENST00000550008 TPM1P09493 284 aa17.61■□□□□ 0.41
CUX1-214ENST00000550008 FAM173BQ6P4H8 233 aa17.61■□□□□ 0.41
CUX1-214ENST00000550008 USP6P35125 1406 aa17.6■□□□□ 0.41
CUX1-214ENST00000550008 KIAA0232Q92628 1395 aa17.6■□□□□ 0.41
CUX1-214ENST00000550008 ZPR1O75312 459 aa17.6■□□□□ 0.41
CUX1-214ENST00000550008 IFIT3O14879 490 aaKnown RBP17.6■□□□□ 0.41
CUX1-214ENST00000550008 AEBP2Q6ZN18 517 aaPredicted RBP17.6■□□□□ 0.41
CUX1-214ENST00000550008 AATKQ6ZMQ8 1374 aa17.6■□□□□ 0.41
CUX1-214ENST00000550008 SLC5A1P13866 664 aa17.6■□□□□ 0.41
CUX1-214ENST00000550008 Q6ZUG5 572 aa17.6■□□□□ 0.41
CUX1-214ENST00000550008 JMYQ8N9B5 988 aa17.6■□□□□ 0.41
CUX1-214ENST00000550008 CD2BP2O95400 341 aaKnown RBP17.59■□□□□ 0.41
CUX1-214ENST00000550008 ATP6V1AP38606 617 aa17.59■□□□□ 0.41
CUX1-214ENST00000550008 PRIM1P49642 420 aaKnown RBP17.59■□□□□ 0.41
CUX1-214ENST00000550008 ZSCAN30Q86W11 494 aa17.59■□□□□ 0.41
CUX1-214ENST00000550008 PALD1Q9ULE6 856 aa17.59■□□□□ 0.41
CUX1-214ENST00000550008 ZNF652Q9Y2D9 606 aa17.59■□□□□ 0.41
CUX1-214ENST00000550008 TTC41PQ6P2S7 1318 aa17.59■□□□□ 0.41
CUX1-214ENST00000550008 BIN1O00499 593 aa17.59■□□□□ 0.41
CUX1-214ENST00000550008 IL15P40933 162 aaPredicted RBP17.59■□□□□ 0.41
CUX1-214ENST00000550008 MCMDC2Q4G0Z9 681 aa17.59■□□□□ 0.41
CUX1-214ENST00000550008 PAG1Q9NWQ8 432 aa17.59■□□□□ 0.41
CUX1-214ENST00000550008 MADDQ8WXG6 1647 aa17.59■□□□□ 0.41
CUX1-214ENST00000550008 UNC5CLQ8IV45 518 aa17.59■□□□□ 0.41
CUX1-214ENST00000550008 TEX13AQ9BXU3 409 aaPredicted RBP17.59■□□□□ 0.41
CUX1-214ENST00000550008 ORC3Q9UBD5 711 aaPredicted RBP17.59■□□□□ 0.41
CUX1-214ENST00000550008 SLC3A2P08195 630 aaKnown RBP17.58■□□□□ 0.41
CUX1-214ENST00000550008 ISM2Q6H9L7 571 aa17.58■□□□□ 0.41
CUX1-214ENST00000550008 SERPINC1P01008 464 aa17.58■□□□□ 0.41
CUX1-214ENST00000550008 PKP1Q13835 747 aa17.58■□□□□ 0.41
CUX1-214ENST00000550008 SLC9C2Q5TAH2 1124 aa17.58■□□□□ 0.41
CUX1-214ENST00000550008 METTL22Q9BUU2 404 aaPredicted RBP17.58■□□□□ 0.41
CUX1-214ENST00000550008 SPHKAPQ2M3C7 1700 aa17.58■□□□□ 0.41
CUX1-214ENST00000550008 IGSF1Q8N6C5 1336 aa17.58■□□□□ 0.4
CUX1-214ENST00000550008 CAVIN4Q5BKX8 364 aa17.58■□□□□ 0.4
CUX1-214ENST00000550008 ANKIB1Q9P2G1 1089 aa17.58■□□□□ 0.4
CUX1-214ENST00000550008 PLEKHG1Q9ULL1 1385 aa17.58■□□□□ 0.4
CUX1-214ENST00000550008 CFAP74Q9C0B2 1584 aa17.58■□□□□ 0.4
CUX1-214ENST00000550008 A2ML1A8K2U0 1454 aa17.57■□□□□ 0.4
CUX1-214ENST00000550008 GCKRQ14397 625 aa17.57■□□□□ 0.4
CUX1-214ENST00000550008 KLF18A0A0U1RQI7 1052 aa17.57■□□□□ 0.4
CUX1-214ENST00000550008 ANKRD20A12PQ8NF67 263 aa17.57■□□□□ 0.4
CUX1-214ENST00000550008 CDKL5O76039 1030 aa17.57■□□□□ 0.4
CUX1-214ENST00000550008 DNAJC10Q8IXB1 793 aa17.57■□□□□ 0.4
CUX1-214ENST00000550008 A0A0U1RQG5 324 aaPredicted RBP17.56■□□□□ 0.4
CUX1-214ENST00000550008 HMGB1P09429 215 aaKnown RBP17.56■□□□□ 0.4
CUX1-214ENST00000550008 DDB1Q16531 1140 aa17.56■□□□□ 0.4
CUX1-214ENST00000550008 DZIP3Q86Y13 1208 aaKnown RBP17.56■□□□□ 0.4
CUX1-214ENST00000550008 FAM177A1Q8N128 213 aaPredicted RBP17.56■□□□□ 0.4
CUX1-214ENST00000550008 PHF23Q9BUL5 403 aaPredicted RBP17.56■□□□□ 0.4
CUX1-214ENST00000550008 CCDC171Q6TFL3 1326 aa17.56■□□□□ 0.4
CUX1-214ENST00000550008 ATP7BP35670 1465 aa17.56■□□□□ 0.4
CUX1-214ENST00000550008 SETD1BQ9UPS6 1966 aaKnown RBP17.56■□□□□ 0.4
CUX1-214ENST00000550008 SGSM2O43147 1006 aa17.56■□□□□ 0.4
Retrieved 100 of 20,778 RNA–protein pairs in 17 ms