RNA–Protein interactions for RNA: ENST00000541122.6

SMARCA4-207, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4, humanhuman

APPRIS P4 TSL 5 BASIC

Gene SMARCA4, Length 5,139 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA4-207ENST00000541122 RMND1Q9NWS8 449 aa17.19■□□□□ 0.34
SMARCA4-207ENST00000541122 POLR3AO14802 1390 aaPredicted RBP17.19■□□□□ 0.34
SMARCA4-207ENST00000541122 RNF123Q5XPI4 1314 aa17.19■□□□□ 0.34
SMARCA4-207ENST00000541122 CTAGE9A4FU28 777 aa17.19■□□□□ 0.34
SMARCA4-207ENST00000541122 CCT2P78371 535 aaKnown RBP17.19■□□□□ 0.34
SMARCA4-207ENST00000541122 MBIPQ9NS73 344 aa17.19■□□□□ 0.34
SMARCA4-207ENST00000541122 DNMBPQ6XZF7 1577 aa17.18■□□□□ 0.34
SMARCA4-207ENST00000541122 ATF3P18847 181 aa17.18■□□□□ 0.34
SMARCA4-207ENST00000541122 AOPEPQ8N6M6 819 aa17.18■□□□□ 0.34
SMARCA4-207ENST00000541122 NSRP1Q9H0G5 558 aaKnown RBP17.18■□□□□ 0.34
SMARCA4-207ENST00000541122 NAPBQ9H115 298 aa17.18■□□□□ 0.34
SMARCA4-207ENST00000541122 BMP15O95972 392 aa17.18■□□□□ 0.34
SMARCA4-207ENST00000541122 IARSP41252 1262 aaKnown RBP17.18■□□□□ 0.34
SMARCA4-207ENST00000541122 CTCFLQ8NI51 663 aaPredicted RBP17.18■□□□□ 0.34
SMARCA4-207ENST00000541122 PIK3C2GO75747 1445 aa17.18■□□□□ 0.34
SMARCA4-207ENST00000541122 AMPD3Q01432 767 aa17.18■□□□□ 0.34
SMARCA4-207ENST00000541122 LARP6Q9BRS8 491 aaKnown RBP17.18■□□□□ 0.34
SMARCA4-207ENST00000541122 CCDC8Q9H0W5 538 aaPredicted RBP17.18■□□□□ 0.34
SMARCA4-207ENST00000541122 RBSNQ9H1K0 784 aa17.18■□□□□ 0.34
SMARCA4-207ENST00000541122 GOPCQ9HD26 462 aa17.18■□□□□ 0.34
SMARCA4-207ENST00000541122 N4BP3O15049 544 aa17.17■□□□□ 0.34
SMARCA4-207ENST00000541122 DNM1Q05193 864 aaKnown RBP17.17■□□□□ 0.34
SMARCA4-207ENST00000541122 KDM2BQ8NHM5 1336 aa17.17■□□□□ 0.34
SMARCA4-207ENST00000541122 A0A1B0GUL7 405 aa17.17■□□□□ 0.34
SMARCA4-207ENST00000541122 LIG1P18858 919 aa17.17■□□□□ 0.34
SMARCA4-207ENST00000541122 MICALL1Q8N3F8 863 aa17.17■□□□□ 0.34
SMARCA4-207ENST00000541122 NUDT16Q96DE0 195 aaKnown RBP17.17■□□□□ 0.34
SMARCA4-207ENST00000541122 INSRP06213 1382 aa17.17■□□□□ 0.34
SMARCA4-207ENST00000541122 IQGAP2Q13576 1575 aa17.17■□□□□ 0.34
SMARCA4-207ENST00000541122 DESP17661 470 aa17.17■□□□□ 0.34
SMARCA4-207ENST00000541122 LRP2BPQ9P2M1 347 aa17.17■□□□□ 0.34
SMARCA4-207ENST00000541122 KIAA0586Q9BVV6 1533 aa17.17■□□□□ 0.34
SMARCA4-207ENST00000541122 ZNF287Q9HBT7 754 aa17.17■□□□□ 0.34
SMARCA4-207ENST00000541122 HYPKQ9NX55 129 aa17.17■□□□□ 0.34
SMARCA4-207ENST00000541122 FBXO3Q9UK99 471 aa17.17■□□□□ 0.34
SMARCA4-207ENST00000541122 IFT140Q96RY7 1462 aa17.17■□□□□ 0.34
SMARCA4-207ENST00000541122 MIS18AQ9NYP9 233 aa17.16■□□□□ 0.34
SMARCA4-207ENST00000541122 DBF4Q9UBU7 674 aaPredicted RBP17.16■□□□□ 0.34
SMARCA4-207ENST00000541122 RBM42Q9BTD8 480 aaKnown RBP17.16■□□□□ 0.34
SMARCA4-207ENST00000541122 MAGI1Q96QZ7 1491 aaPredicted RBP17.16■□□□□ 0.34
SMARCA4-207ENST00000541122 ABCA10Q8WWZ4 1543 aa17.16■□□□□ 0.34
SMARCA4-207ENST00000541122 ANKRD24Q8TF21 1146 aa17.16■□□□□ 0.34
SMARCA4-207ENST00000541122 TTC21BQ7Z4L5 1316 aa17.16■□□□□ 0.34
SMARCA4-207ENST00000541122 TMEM266Q2M3C6 531 aa17.16■□□□□ 0.34
SMARCA4-207ENST00000541122 HDXQ7Z353 690 aa17.16■□□□□ 0.34
SMARCA4-207ENST00000541122 RHPN1Q8TCX5 695 aa17.16■□□□□ 0.34
SMARCA4-207ENST00000541122 GSTTP1A0A1W2PQM5 241 aa17.15■□□□□ 0.34
SMARCA4-207ENST00000541122 ATL3Q6DD88 541 aa17.15■□□□□ 0.34
SMARCA4-207ENST00000541122 TUBB2AQ13885 445 aa17.15■□□□□ 0.34
SMARCA4-207ENST00000541122 TUBB2BQ9BVA1 445 aa17.15■□□□□ 0.34
SMARCA4-207ENST00000541122 ARFGAP2Q8N6H7 521 aa17.15■□□□□ 0.34
SMARCA4-207ENST00000541122 DCTPP1Q9H773 170 aa17.15■□□□□ 0.34
SMARCA4-207ENST00000541122 KIF14Q15058 1648 aa17.15■□□□□ 0.34
SMARCA4-207ENST00000541122 A0A087WZG4 1122 aa17.14■□□□□ 0.33
SMARCA4-207ENST00000541122 METTL24Q5JXM2 366 aa17.14■□□□□ 0.33
SMARCA4-207ENST00000541122 PPP1R42Q7Z4L9 355 aa17.14■□□□□ 0.33
SMARCA4-207ENST00000541122 DDX12PQ92771 950 aa17.14■□□□□ 0.33
SMARCA4-207ENST00000541122 VPS18Q9P253 973 aa17.14■□□□□ 0.33
SMARCA4-207ENST00000541122 NOL12Q9UGY1 213 aaKnown RBP eCLIP17.14■□□□□ 0.335e-6■□□□□ 10.3
SMARCA4-207ENST00000541122 SEC24BO95487 1268 aa17.14■□□□□ 0.33
SMARCA4-207ENST00000541122 MRPL50Q8N5N7 158 aaKnown RBP17.14■□□□□ 0.33
SMARCA4-207ENST00000541122 NCOA7Q8NI08 942 aa17.14■□□□□ 0.33
SMARCA4-207ENST00000541122 IFIT3O14879 490 aaKnown RBP17.14■□□□□ 0.33
SMARCA4-207ENST00000541122 AMOTQ4VCS5 1084 aa17.14■□□□□ 0.33
SMARCA4-207ENST00000541122 IQCA1Q86XH1 822 aa17.14■□□□□ 0.33
SMARCA4-207ENST00000541122 OTUD6BQ8N6M0 293 aa17.14■□□□□ 0.33
SMARCA4-207ENST00000541122 ZMYM3Q14202 1370 aa17.14■□□□□ 0.33
SMARCA4-207ENST00000541122 KRT83P78385 493 aa17.14■□□□□ 0.33
SMARCA4-207ENST00000541122 SAMD1Q6SPF0 538 aaPredicted RBP17.14■□□□□ 0.33
SMARCA4-207ENST00000541122 SEC63Q9UGP8 760 aaKnown RBP17.14■□□□□ 0.33
SMARCA4-207ENST00000541122 RTL1A6NKG5 1358 aa17.14■□□□□ 0.33
SMARCA4-207ENST00000541122 MAP3K12Q12852 859 aa17.13■□□□□ 0.33
SMARCA4-207ENST00000541122 ESCO1Q5FWF5 840 aa17.13■□□□□ 0.33
SMARCA4-207ENST00000541122 C6orf163Q5TEZ5 329 aa17.13■□□□□ 0.33
SMARCA4-207ENST00000541122 CCDC194A0A1B0GVG4 234 aa17.13■□□□□ 0.33
SMARCA4-207ENST00000541122 CCDC155Q8N6L0 562 aa17.13■□□□□ 0.33
SMARCA4-207ENST00000541122 NECAB1Q8N987 351 aa17.13■□□□□ 0.33
SMARCA4-207ENST00000541122 USP26Q9BXU7 913 aa17.13■□□□□ 0.33
SMARCA4-207ENST00000541122 POLR3DP05423 398 aaPredicted RBP17.13■□□□□ 0.33
SMARCA4-207ENST00000541122 SYT10Q6XYQ8 523 aa17.13■□□□□ 0.33
SMARCA4-207ENST00000541122 CCDC121Q6ZUS5 278 aa17.13■□□□□ 0.33
SMARCA4-207ENST00000541122 LRRC27Q9C0I9 530 aa17.13■□□□□ 0.33
SMARCA4-207ENST00000541122 THOC2Q8NI27 1593 aaKnown RBP17.13■□□□□ 0.33
SMARCA4-207ENST00000541122 METAP2P50579 478 aaKnown RBP eCLIP17.13■□□□□ 0.339e-7■■□□□ 12.7
SMARCA4-207ENST00000541122 ZBTB40Q9NUA8 1239 aa17.13■□□□□ 0.33
SMARCA4-207ENST00000541122 TACC1O75410 805 aa17.12■□□□□ 0.33
SMARCA4-207ENST00000541122 TMEM132AQ24JP5 1023 aa17.12■□□□□ 0.33
SMARCA4-207ENST00000541122 MSL1Q68DK7 614 aa17.12■□□□□ 0.33
SMARCA4-207ENST00000541122 OSCARQ8IYS5 282 aa17.12■□□□□ 0.33
SMARCA4-207ENST00000541122 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP17.12■□□□□ 0.33
SMARCA4-207ENST00000541122 RBM8AQ9Y5S9 174 aaKnown RBP17.12■□□□□ 0.33
SMARCA4-207ENST00000541122 A6NNZ2 444 aa17.12■□□□□ 0.33
SMARCA4-207ENST00000541122 AKR1B10O60218 316 aa17.12■□□□□ 0.33
SMARCA4-207ENST00000541122 TUBB8Q3ZCM7 444 aa17.12■□□□□ 0.33
SMARCA4-207ENST00000541122 BRF1Q92994 677 aa17.12■□□□□ 0.33
SMARCA4-207ENST00000541122 STMN4Q9H169 189 aaPredicted RBP17.12■□□□□ 0.33
SMARCA4-207ENST00000541122 RIOK3O14730 519 aaKnown RBP17.12■□□□□ 0.33
SMARCA4-207ENST00000541122 ANKS4BQ8N8V4 417 aa17.12■□□□□ 0.33
SMARCA4-207ENST00000541122 WWC2Q6AWC2 1192 aa17.12■□□□□ 0.33
SMARCA4-207ENST00000541122 C10orf67Q8IYJ2 551 aa17.12■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms