RNA–Protein interactions for RNA: ENST00000538492.5

RAB40C-204, Transcript of RAB40C, member RAS oncogene family, humanhuman

APPRIS P1 TSL 2 BASIC

Gene RAB40C, Length 2,569 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RAB40C-204ENST00000538492 LIMCH1Q9UPQ0 1083 aa29.99■■■□□ 2.39
RAB40C-204ENST00000538492 CPDO75976 1380 aa29.98■■■□□ 2.39
RAB40C-204ENST00000538492 DDX54Q8TDD1 881 aaKnown RBP29.98■■■□□ 2.39
RAB40C-204ENST00000538492 CCDC171Q6TFL3 1326 aa29.97■■■□□ 2.39
RAB40C-204ENST00000538492 FSD1Q9BTV5 496 aa29.97■■■□□ 2.39
RAB40C-204ENST00000538492 TMEM63CQ9P1W3 806 aa29.97■■■□□ 2.39
RAB40C-204ENST00000538492 BRINP3Q76B58 766 aa29.96■■■□□ 2.39
RAB40C-204ENST00000538492 A0A087WZG4 1122 aa29.96■■■□□ 2.39
RAB40C-204ENST00000538492 PRDM11Q9NQV5 511 aa29.96■■■□□ 2.39
RAB40C-204ENST00000538492 KCNJ4P48050 445 aa29.95■■■□□ 2.39
RAB40C-204ENST00000538492 TOM1L2Q6ZVM7 507 aa29.95■■■□□ 2.39
RAB40C-204ENST00000538492 GDPD2Q9HCC8 539 aa29.95■■■□□ 2.39
RAB40C-204ENST00000538492 RBM8AQ9Y5S9 174 aaKnown RBP29.95■■■□□ 2.39
RAB40C-204ENST00000538492 WDR33Q9C0J8 1336 aaKnown RBP29.95■■■□□ 2.39
RAB40C-204ENST00000538492 ARFGEF2Q9Y6D5 1785 aa29.95■■■□□ 2.38
RAB40C-204ENST00000538492 LARGE1O95461 756 aa29.95■■■□□ 2.38
RAB40C-204ENST00000538492 NECTIN1Q15223 517 aa29.95■■■□□ 2.38
RAB40C-204ENST00000538492 RPAP1Q9BWH6 1393 aaPredicted RBP29.94■■■□□ 2.38
RAB40C-204ENST00000538492 A0A0D9SFI3 127 aa29.94■■■□□ 2.38
RAB40C-204ENST00000538492 DTNBO60941 627 aa29.94■■■□□ 2.38
RAB40C-204ENST00000538492 RFX5P48382 616 aaPredicted RBP29.94■■■□□ 2.38
RAB40C-204ENST00000538492 PRIM1P49642 420 aaKnown RBP29.94■■■□□ 2.38
RAB40C-204ENST00000538492 PTPN12Q05209 780 aaKnown RBP29.94■■■□□ 2.38
RAB40C-204ENST00000538492 EDC3Q96F86 508 aaKnown RBP29.94■■■□□ 2.38
RAB40C-204ENST00000538492 COPRSQ9NQ92 184 aa29.94■■■□□ 2.38
RAB40C-204ENST00000538492 PDRG1Q9NUG6 133 aa29.94■■■□□ 2.38
RAB40C-204ENST00000538492 HIP1O00291 1037 aa29.93■■■□□ 2.38
RAB40C-204ENST00000538492 TFCP2Q12800 502 aa29.93■■■□□ 2.38
RAB40C-204ENST00000538492 TRIM44Q96DX7 344 aaPredicted RBP29.93■■■□□ 2.38
RAB40C-204ENST00000538492 CYP46A1Q9Y6A2 500 aa29.92■■■□□ 2.38
RAB40C-204ENST00000538492 PLBD2Q8NHP8 589 aa29.92■■■□□ 2.38
RAB40C-204ENST00000538492 TCHHQ07283 1943 aa29.92■■■□□ 2.38
RAB40C-204ENST00000538492 PLEKHG2Q9H7P9 1386 aa29.91■■■□□ 2.38
RAB40C-204ENST00000538492 SYCE3A1L190 88 aa29.91■■■□□ 2.38
RAB40C-204ENST00000538492 NBPF26B4DH59 902 aa29.91■■■□□ 2.38
RAB40C-204ENST00000538492 ZKSCAN1P17029 563 aaPredicted RBP29.91■■■□□ 2.38
RAB40C-204ENST00000538492 NBPF14Q5TI25 921 aa29.91■■■□□ 2.38
RAB40C-204ENST00000538492 CREB3L3Q68CJ9 461 aa29.91■■■□□ 2.38
RAB40C-204ENST00000538492 NBPF10Q6P3W6 841 aaKnown RBP29.91■■■□□ 2.38
RAB40C-204ENST00000538492 NBPF15Q8N660 670 aa29.91■■■□□ 2.38
RAB40C-204ENST00000538492 ZCRB1Q8TBF4 217 aaKnown RBP29.91■■■□□ 2.38
RAB40C-204ENST00000538492 ZSWIM6Q9HCJ5 1215 aa29.91■■■□□ 2.38
RAB40C-204ENST00000538492 MAP4K1Q92918 833 aa29.91■■■□□ 2.38
RAB40C-204ENST00000538492 RBSNQ9H1K0 784 aa29.91■■■□□ 2.38
RAB40C-204ENST00000538492 DBNLQ9UJU6 430 aaKnown RBP29.91■■■□□ 2.38
RAB40C-204ENST00000538492 ZSCAN21Q9Y5A6 473 aaPredicted RBP29.91■■■□□ 2.38
RAB40C-204ENST00000538492 GLI3P10071 1580 aa29.91■■■□□ 2.38
RAB40C-204ENST00000538492 WDR17Q8IZU2 1322 aa29.9■■■□□ 2.38
RAB40C-204ENST00000538492 MBD3O95983 291 aa29.9■■■□□ 2.38
RAB40C-204ENST00000538492 VPS53Q5VIR6 699 aa29.9■■■□□ 2.38
RAB40C-204ENST00000538492 KCNB2Q92953 911 aa29.9■■■□□ 2.38
RAB40C-204ENST00000538492 NDUFB9Q9Y6M9 179 aa29.9■■■□□ 2.38
RAB40C-204ENST00000538492 XIRP1Q702N8 1843 aaKnown RBP29.9■■■□□ 2.38
RAB40C-204ENST00000538492 RABL6Q3YEC7 729 aaPredicted RBP29.9■■■□□ 2.38
RAB40C-204ENST00000538492 CCDC83Q8IWF9 413 aa29.9■■■□□ 2.38
RAB40C-204ENST00000538492 SMC3Q9UQE7 1217 aa29.9■■■□□ 2.38
RAB40C-204ENST00000538492 TNNI3KQ59H18 835 aa29.89■■■□□ 2.38
RAB40C-204ENST00000538492 FPGT-TNNI3KV9GXZ4 949 aa29.89■■■□□ 2.38
RAB40C-204ENST00000538492 PCDH11XQ9BZA7 1347 aa29.89■■■□□ 2.38
RAB40C-204ENST00000538492 PCDH11YQ9BZA8 1340 aa29.89■■■□□ 2.38
RAB40C-204ENST00000538492 TM6SF1Q9BZW5 370 aa29.89■■■□□ 2.37
RAB40C-204ENST00000538492 ANP32BQ92688 251 aaKnown RBP29.88■■■□□ 2.37
RAB40C-204ENST00000538492 COL9A3Q14050 684 aaPredicted RBP29.88■■■□□ 2.37
RAB40C-204ENST00000538492 ZBTB4Q9P1Z0 1013 aaPredicted RBP29.88■■■□□ 2.37
RAB40C-204ENST00000538492 LAMB4A4D0S4 1761 aa29.88■■■□□ 2.37
RAB40C-204ENST00000538492 SYT1P21579 422 aa29.87■■■□□ 2.37
RAB40C-204ENST00000538492 TTLL7Q6ZT98 887 aa29.87■■■□□ 2.37
RAB40C-204ENST00000538492 CHMP3Q9Y3E7 222 aa29.87■■■□□ 2.37
RAB40C-204ENST00000538492 ERBB4Q15303 1308 aa29.87■■■□□ 2.37
RAB40C-204ENST00000538492 GADD45BO75293 160 aaPredicted RBP29.87■■■□□ 2.37
RAB40C-204ENST00000538492 CCDC173Q0VFZ6 552 aa29.87■■■□□ 2.37
RAB40C-204ENST00000538492 LMBR1LQ6UX01 489 aa29.87■■■□□ 2.37
RAB40C-204ENST00000538492 ZNF589Q86UQ0 364 aaPredicted RBP29.87■■■□□ 2.37
RAB40C-204ENST00000538492 SLC27A2O14975 620 aa29.86■■■□□ 2.37
RAB40C-204ENST00000538492 STX6O43752 255 aa29.86■■■□□ 2.37
RAB40C-204ENST00000538492 CASP7P55210 303 aa29.86■■■□□ 2.37
RAB40C-204ENST00000538492 USP48Q86UV5 1035 aa29.86■■■□□ 2.37
RAB40C-204ENST00000538492 PARP4Q9UKK3 1724 aaKnown RBP29.86■■■□□ 2.37
RAB40C-204ENST00000538492 A1BGP04217 495 aa29.85■■■□□ 2.37
RAB40C-204ENST00000538492 ZSCAN22P10073 491 aaPredicted RBP29.85■■■□□ 2.37
RAB40C-204ENST00000538492 ESPNB1AK53 854 aa29.85■■■□□ 2.37
RAB40C-204ENST00000538492 LRSAM1Q6UWE0 723 aa29.85■■■□□ 2.37
RAB40C-204ENST00000538492 SNRKQ9NRH2 765 aa29.85■■■□□ 2.37
RAB40C-204ENST00000538492 CCDC9Q9Y3X0 531 aaKnown RBP29.85■■■□□ 2.37
RAB40C-204ENST00000538492 TAF6LQ9Y6J9 622 aa29.84■■■□□ 2.37
RAB40C-204ENST00000538492 MED23Q9ULK4 1368 aa29.84■■■□□ 2.37
RAB40C-204ENST00000538492 ATP5JP18859 108 aa29.84■■■□□ 2.37
RAB40C-204ENST00000538492 DBNDD2Q9BQY9 259 aa29.84■■■□□ 2.37
RAB40C-204ENST00000538492 GJB2P29033 226 aa29.83■■■□□ 2.37
RAB40C-204ENST00000538492 ME3Q16798 604 aa29.83■■■□□ 2.37
RAB40C-204ENST00000538492 PPP1R9BQ96SB3 815 aa29.83■■■□□ 2.37
RAB40C-204ENST00000538492 DNAJC2Q99543 621 aaKnown RBP29.83■■■□□ 2.37
RAB40C-204ENST00000538492 NECAB1Q8N987 351 aa29.83■■■□□ 2.37
RAB40C-204ENST00000538492 TCEANC2Q96MN5 208 aa29.83■■■□□ 2.37
RAB40C-204ENST00000538492 CNPY2Q9Y2B0 182 aa29.83■■■□□ 2.37
RAB40C-204ENST00000538492 TPRNQ4KMQ1 711 aa29.82■■■□□ 2.36
RAB40C-204ENST00000538492 ANO8Q9HCE9 1232 aaPredicted RBP29.82■■■□□ 2.36
RAB40C-204ENST00000538492 STRN4Q9NRL3 753 aa29.82■■■□□ 2.36
RAB40C-204ENST00000538492 CHGBP05060 677 aa29.82■■■□□ 2.36
RAB40C-204ENST00000538492 CLCN1P35523 988 aa29.82■■■□□ 2.36
Retrieved 100 of 20,778 RNA–protein pairs in 25.6 ms