RNA–Protein interactions for RNA: ENST00000535717.1

CHD4-203, Transcript of chromodomain helicase DNA binding protein 4, humanhuman

TSL 2

Gene CHD4, Length 660 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD4-203ENST00000535717 NEXNQ0ZGT2 675 aa15.35■□□□□ 0.05
CHD4-203ENST00000535717 CWF19L2Q2TBE0 894 aaKnown RBP15.35■□□□□ 0.05
CHD4-203ENST00000535717 SYNE4Q8N205 404 aa15.35■□□□□ 0.05
CHD4-203ENST00000535717 CCDC191Q8NCU4 936 aa15.35■□□□□ 0.05
CHD4-203ENST00000535717 BRIP1Q9BX63 1249 aa15.35■□□□□ 0.05
CHD4-203ENST00000535717 TRMT112Q9UI30 125 aaKnown RBP15.35■□□□□ 0.05
CHD4-203ENST00000535717 ANKRD31Q8N7Z5 1873 aa15.35■□□□□ 0.05
CHD4-203ENST00000535717 ABCC12Q96J65 1359 aa15.35■□□□□ 0.05
CHD4-203ENST00000535717 KIAA1551Q9HCM1 1747 aa15.34■□□□□ 0.05
CHD4-203ENST00000535717 PXDNLA1KZ92 1463 aa15.34■□□□□ 0.05
CHD4-203ENST00000535717 A0A0G2JLW4 131 aa15.34■□□□□ 0.05
CHD4-203ENST00000535717 NEURL1BA8MQ27 555 aa15.34■□□□□ 0.05
CHD4-203ENST00000535717 TGFB2P61812 414 aa15.34■□□□□ 0.05
CHD4-203ENST00000535717 BEND3Q5T5X7 828 aa15.34■□□□□ 0.05
CHD4-203ENST00000535717 LINS1Q8NG48 757 aa15.34■□□□□ 0.05
CHD4-203ENST00000535717 CWC25Q9NXE8 425 aaPredicted RBP15.34■□□□□ 0.05
CHD4-203ENST00000535717 DPEP1P16444 411 aa15.33■□□□□ 0.04
CHD4-203ENST00000535717 CHRNA5P30532 468 aa15.33■□□□□ 0.04
CHD4-203ENST00000535717 SLC4A10Q6U841 1118 aa15.33■□□□□ 0.04
CHD4-203ENST00000535717 FAM89AQ96GI7 184 aa15.33■□□□□ 0.04
CHD4-203ENST00000535717 RNF123Q5XPI4 1314 aa15.33■□□□□ 0.04
CHD4-203ENST00000535717 KIF16BQ96L93 1317 aa15.33■□□□□ 0.04
CHD4-203ENST00000535717 N4BP2Q86UW6 1770 aaPredicted RBP15.32■□□□□ 0.04
CHD4-203ENST00000535717 KCNA3P22001 575 aa15.32■□□□□ 0.04
CHD4-203ENST00000535717 PDE6BP35913 854 aa15.32■□□□□ 0.04
CHD4-203ENST00000535717 RTL5Q5HYW3 569 aaPredicted RBP15.32■□□□□ 0.04
CHD4-203ENST00000535717 SLC10A5Q5PT55 438 aa15.32■□□□□ 0.04
CHD4-203ENST00000535717 FRAT1Q92837 279 aaPredicted RBP15.32■□□□□ 0.04
CHD4-203ENST00000535717 GOLGB1Q14789 3259 aaKnown RBP15.32■□□□□ 0.04
CHD4-203ENST00000535717 SH3TC1Q8TE82 1336 aa15.32■□□□□ 0.04
CHD4-203ENST00000535717 KLRG2A4D1S0 409 aaPredicted RBP15.31■□□□□ 0.04
CHD4-203ENST00000535717 PCCAP05165 728 aaPredicted RBP15.31■□□□□ 0.04
CHD4-203ENST00000535717 HCLS1P14317 486 aaPredicted RBP15.31■□□□□ 0.04
CHD4-203ENST00000535717 GCKRQ14397 625 aa15.31■□□□□ 0.04
CHD4-203ENST00000535717 C2CD5Q86YS7 1000 aa15.31■□□□□ 0.04
CHD4-203ENST00000535717 ZBTB38Q8NAP3 1195 aaPredicted RBP15.31■□□□□ 0.04
CHD4-203ENST00000535717 ARHGAP45Q92619 1136 aa15.31■□□□□ 0.04
CHD4-203ENST00000535717 JARID2Q92833 1246 aaPredicted RBP15.31■□□□□ 0.04
CHD4-203ENST00000535717 API5Q9BZZ5 524 aaKnown RBP15.31■□□□□ 0.04
CHD4-203ENST00000535717 RCAN3Q9UKA8 241 aa15.31■□□□□ 0.04
CHD4-203ENST00000535717 RIC1Q4ADV7 1423 aa15.31■□□□□ 0.04
CHD4-203ENST00000535717 TNRC6CQ9HCJ0 1690 aaKnown RBP15.31■□□□□ 0.04
CHD4-203ENST00000535717 H0YIN7 160 aa15.3■□□□□ 0.04
CHD4-203ENST00000535717 IPO8O15397 1037 aaKnown RBP15.3■□□□□ 0.04
CHD4-203ENST00000535717 C3orf67Q6ZVT6 689 aa15.3■□□□□ 0.04
CHD4-203ENST00000535717 SRCIN1Q9C0H9 1055 aa15.3■□□□□ 0.04
CHD4-203ENST00000535717 COL11A2P13942 1736 aaPredicted RBP15.29■□□□□ 0.04
CHD4-203ENST00000535717 H7C1W4 665 aa15.29■□□□□ 0.04
CHD4-203ENST00000535717 IRS4O14654 1257 aaPredicted RBP15.29■□□□□ 0.04
CHD4-203ENST00000535717 ALDH1L1O75891 902 aa15.29■□□□□ 0.04
CHD4-203ENST00000535717 SRGNP10124 158 aa15.29■□□□□ 0.04
CHD4-203ENST00000535717 TRIM27P14373 513 aa15.29■□□□□ 0.04
CHD4-203ENST00000535717 ATF7IPQ6VMQ6 1270 aa15.29■□□□□ 0.04
CHD4-203ENST00000535717 WWC3Q9ULE0 1092 aa15.29■□□□□ 0.04
CHD4-203ENST00000535717 PDZRN3Q9UPQ7 1066 aa15.29■□□□□ 0.04
CHD4-203ENST00000535717 TNNQ9UQP3 1299 aa15.29■□□□□ 0.04
CHD4-203ENST00000535717 CRY2Q49AN0 593 aa15.28■□□□□ 0.04
CHD4-203ENST00000535717 ZKSCAN2Q63HK3 967 aa15.28■□□□□ 0.04
CHD4-203ENST00000535717 UBE3BQ7Z3V4 1068 aa15.28■□□□□ 0.04
CHD4-203ENST00000535717 DDX60Q8IY21 1712 aaKnown RBP15.28■□□□□ 0.04
CHD4-203ENST00000535717 DLEC1Q9Y238 1755 aa15.27■□□□□ 0.04
CHD4-203ENST00000535717 ABCC4O15439 1325 aa15.27■□□□□ 0.04
CHD4-203ENST00000535717 CDHR2Q9BYE9 1310 aa15.27■□□□□ 0.04
CHD4-203ENST00000535717 CASP7P55210 303 aa15.27■□□□□ 0.04
CHD4-203ENST00000535717 NLRP3Q96P20 1036 aa15.27■□□□□ 0.04
CHD4-203ENST00000535717 PIM2Q9P1W9 311 aa15.27■□□□□ 0.04
CHD4-203ENST00000535717 BRCA1P38398 1863 aaKnown RBP15.27■□□□□ 0.03
CHD4-203ENST00000535717 GRM8O00222 908 aa15.26■□□□□ 0.03
CHD4-203ENST00000535717 NPR1P16066 1061 aa15.26■□□□□ 0.03
CHD4-203ENST00000535717 CCT4P50991 539 aaKnown RBP15.26■□□□□ 0.03
CHD4-203ENST00000535717 STYK1Q6J9G0 422 aa15.26■□□□□ 0.03
CHD4-203ENST00000535717 ZNF622Q969S3 477 aaKnown RBP eCLIP15.26■□□□□ 0.03
CHD4-203ENST00000535717 MASTLQ96GX5 879 aa15.26■□□□□ 0.03
CHD4-203ENST00000535717 LAMB2P55268 1798 aa15.26■□□□□ 0.03
CHD4-203ENST00000535717 HOXA10P31260 410 aaPredicted RBP15.25■□□□□ 0.03
CHD4-203ENST00000535717 INTS3Q68E01 1043 aaKnown RBP15.25■□□□□ 0.03
CHD4-203ENST00000535717 RPGRQ92834 1020 aaKnown RBP15.25■□□□□ 0.03
CHD4-203ENST00000535717 CLUAP1Q96AJ1 413 aa15.25■□□□□ 0.03
CHD4-203ENST00000535717 C9orf78Q9NZ63 289 aaPredicted RBP15.25■□□□□ 0.03
CHD4-203ENST00000535717 PDE8AO60658 829 aa15.24■□□□□ 0.03
CHD4-203ENST00000535717 HSP90B1P14625 803 aaKnown RBP15.24■□□□□ 0.03
CHD4-203ENST00000535717 YBX3P16989 372 aaKnown RBP eCLIP15.24■□□□□ 0.032e-10■□□□□ 10.2
CHD4-203ENST00000535717 SF3B3Q15393 1217 aaKnown RBP15.24■□□□□ 0.03
CHD4-203ENST00000535717 DALRD3Q5D0E6 543 aaKnown RBP15.24■□□□□ 0.03
CHD4-203ENST00000535717 TTLL6Q8N841 843 aa15.24■□□□□ 0.03
CHD4-203ENST00000535717 USP44Q9H0E7 712 aa15.24■□□□□ 0.03
CHD4-203ENST00000535717 UTYO14607 1347 aa15.23■□□□□ 0.03
CHD4-203ENST00000535717 PLIN1O60240 522 aa15.23■□□□□ 0.03
CHD4-203ENST00000535717 NBPF7P0C2Y1 421 aaPredicted RBP15.23■□□□□ 0.03
CHD4-203ENST00000535717 RLBP1P12271 317 aa15.23■□□□□ 0.03
CHD4-203ENST00000535717 GPR162Q16538 588 aa15.23■□□□□ 0.03
CHD4-203ENST00000535717 CNKSR1Q969H4 720 aa15.23■□□□□ 0.03
CHD4-203ENST00000535717 PLA2G12BQ9BX93 195 aa15.23■□□□□ 0.03
CHD4-203ENST00000535717 BCS1LQ9Y276 419 aa15.23■□□□□ 0.03
CHD4-203ENST00000535717 CTSWP56202 376 aa15.22■□□□□ 0.03
CHD4-203ENST00000535717 DZIP1LQ8IYY4 767 aaKnown RBP15.22■□□□□ 0.03
CHD4-203ENST00000535717 TMEM57Q8N5G2 664 aa15.22■□□□□ 0.03
CHD4-203ENST00000535717 RBM17Q96I25 401 aaKnown RBP15.22■□□□□ 0.03
CHD4-203ENST00000535717 CRAMP1Q96RY5 1269 aa15.22■□□□□ 0.03
CHD4-203ENST00000535717 UTRNP46939 3433 aa15.22■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 90.5 ms