RNA–Protein interactions for RNA: ENST00000533222.5

CD44-236, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 581 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-236ENST00000533222 H7C1W4 665 aa7.42□□□□□ -1.22
CD44-236ENST00000533222 ATXN7O15265 892 aaPredicted RBP7.42□□□□□ -1.22
CD44-236ENST00000533222 EIF1AXP47813 144 aaKnown RBP7.42□□□□□ -1.22
CD44-236ENST00000533222 IDH3AP50213 366 aa7.42□□□□□ -1.22
CD44-236ENST00000533222 FKBP4Q02790 459 aaKnown RBP eCLIP7.42□□□□□ -1.22
CD44-236ENST00000533222 GLYCTKQ8IVS8 523 aa7.42□□□□□ -1.22
CD44-236ENST00000533222 TEX2Q8IWB9 1127 aa7.42□□□□□ -1.22
CD44-236ENST00000533222 IPO4Q8TEX9 1081 aaKnown RBP7.42□□□□□ -1.22
CD44-236ENST00000533222 GZF1Q9H116 711 aaPredicted RBP7.42□□□□□ -1.22
CD44-236ENST00000533222 NEUROD4Q9HD90 331 aa7.42□□□□□ -1.22
CD44-236ENST00000533222 KHNYNO15037 678 aaKnown RBP7.41□□□□□ -1.22
CD44-236ENST00000533222 MICAL2O94851 1124 aa7.41□□□□□ -1.22
CD44-236ENST00000533222 NFX1Q12986 1120 aaKnown RBP7.41□□□□□ -1.22
CD44-236ENST00000533222 GAS6Q14393 721 aa7.41□□□□□ -1.22
CD44-236ENST00000533222 IER5Q5VY09 327 aa7.41□□□□□ -1.22
CD44-236ENST00000533222 NANOS1Q8WY41 292 aaKnown RBP7.41□□□□□ -1.22
CD44-236ENST00000533222 ZNF775Q96BV0 537 aaPredicted RBP7.41□□□□□ -1.22
CD44-236ENST00000533222 CEP63Q96MT8 703 aa7.41□□□□□ -1.22
CD44-236ENST00000533222 LOC105371045A0A1W2PR82 267 aa7.4□□□□□ -1.22
CD44-236ENST00000533222 OPLAHO14841 1288 aa7.4□□□□□ -1.22
CD44-236ENST00000533222 EFSO43281 561 aa7.4□□□□□ -1.22
CD44-236ENST00000533222 FAM157BP0CG42 384 aa7.4□□□□□ -1.22
CD44-236ENST00000533222 MAPTP10636 758 aaKnown RBP7.4□□□□□ -1.22
CD44-236ENST00000533222 NPR3P17342 541 aa7.4□□□□□ -1.22
CD44-236ENST00000533222 CD33P20138 364 aa7.4□□□□□ -1.22
CD44-236ENST00000533222 INPP5BP32019 993 aa7.4□□□□□ -1.22
CD44-236ENST00000533222 ZAP70P43403 619 aa7.4□□□□□ -1.22
CD44-236ENST00000533222 ARHGAP4P98171 946 aa7.4□□□□□ -1.22
CD44-236ENST00000533222 TNP2Q05952 138 aa7.4□□□□□ -1.22
CD44-236ENST00000533222 SFSWAPQ12872 951 aaKnown RBP7.4□□□□□ -1.22
CD44-236ENST00000533222 SF3B2Q13435 895 aaKnown RBP7.4□□□□□ -1.22
CD44-236ENST00000533222 LBRQ14739 615 aaKnown RBP7.4□□□□□ -1.22
CD44-236ENST00000533222 SAMD5Q5TGI4 173 aa7.4□□□□□ -1.22
CD44-236ENST00000533222 SV2AQ7L0J3 742 aa7.4□□□□□ -1.22
CD44-236ENST00000533222 BRD7Q9NPI1 651 aa7.4□□□□□ -1.22
CD44-236ENST00000533222 PCDHGC4Q9Y5F7 938 aa7.4□□□□□ -1.22
CD44-236ENST00000533222 RNFT1Q5M7Z0 435 aa7.39□□□□□ -1.23
CD44-236ENST00000533222 RGL4Q8IZJ4 473 aa7.39□□□□□ -1.23
CD44-236ENST00000533222 ABTB2Q8N961 1025 aa7.39□□□□□ -1.23
CD44-236ENST00000533222 GPR152Q8TDT2 470 aa7.39□□□□□ -1.23
CD44-236ENST00000533222 CCDC87Q9NVE4 849 aa7.39□□□□□ -1.23
CD44-236ENST00000533222 ANKIB1Q9P2G1 1089 aa7.39□□□□□ -1.23
CD44-236ENST00000533222 BIN2Q9UBW5 565 aaPredicted RBP7.39□□□□□ -1.23
CD44-236ENST00000533222 PATL2C9JE40 543 aaKnown RBP7.38□□□□□ -1.23
CD44-236ENST00000533222 FZD6O60353 706 aa7.38□□□□□ -1.23
CD44-236ENST00000533222 VSIG8P0DPA2 414 aa7.38□□□□□ -1.23
CD44-236ENST00000533222 KRT76Q01546 638 aa7.38□□□□□ -1.23
CD44-236ENST00000533222 TRIP4Q15650 581 aaPredicted RBP7.38□□□□□ -1.23
CD44-236ENST00000533222 HIF1AQ16665 826 aa7.38□□□□□ -1.23
CD44-236ENST00000533222 NOM1Q5C9Z4 860 aaKnown RBP7.38□□□□□ -1.23
CD44-236ENST00000533222 FIGNL1Q6PIW4 674 aa7.38□□□□□ -1.23
CD44-236ENST00000533222 EDEM1Q92611 657 aa7.38□□□□□ -1.23
CD44-236ENST00000533222 CCDC136Q96JN2 1154 aa7.38□□□□□ -1.23
CD44-236ENST00000533222 USP35Q9P2H5 1018 aa7.38□□□□□ -1.23
CD44-236ENST00000533222 ZBTB7CA1YPR0 619 aa7.37□□□□□ -1.23
CD44-236ENST00000533222 A6NHS1 94 aa7.37□□□□□ -1.23
CD44-236ENST00000533222 FAM13AO94988 1023 aa7.37□□□□□ -1.23
CD44-236ENST00000533222 ARSDP51689 593 aa7.37□□□□□ -1.23
CD44-236ENST00000533222 CTBSQ01459 385 aa7.37□□□□□ -1.23
CD44-236ENST00000533222 DNM1Q05193 864 aaKnown RBP7.37□□□□□ -1.23
CD44-236ENST00000533222 SND1Q7KZF4 910 aaKnown RBP eCLIP7.37□□□□□ -1.23
CD44-236ENST00000533222 RAB44Q7Z6P3 723 aaPredicted RBP7.37□□□□□ -1.23
CD44-236ENST00000533222 NPAS3Q8IXF0 933 aa7.37□□□□□ -1.23
CD44-236ENST00000533222 GMCL1Q96IK5 515 aa7.37□□□□□ -1.23
CD44-236ENST00000533222 FGFR3P22607 806 aa7.36□□□□□ -1.23
CD44-236ENST00000533222 PUS7Q96PZ0 661 aaKnown RBP7.36□□□□□ -1.23
CD44-236ENST00000533222 SLC30A3Q99726 388 aa7.36□□□□□ -1.23
CD44-236ENST00000533222 COL25A1Q9BXS0 654 aaPredicted RBP7.36□□□□□ -1.23
CD44-236ENST00000533222 ATXN7L1Q9ULK2 861 aaPredicted RBP7.36□□□□□ -1.23
CD44-236ENST00000533222 POLIQ9UNA4 740 aa7.36□□□□□ -1.23
CD44-236ENST00000533222 RTCBQ9Y3I0 505 aaKnown RBP7.36□□□□□ -1.23
CD44-236ENST00000533222 C2CD2LO14523 706 aa7.35□□□□□ -1.23
CD44-236ENST00000533222 CLSTN1O94985 981 aa7.35□□□□□ -1.23
CD44-236ENST00000533222 PDGFAP04085 211 aa7.35□□□□□ -1.23
CD44-236ENST00000533222 CALD1Q05682 793 aaKnown RBP7.35□□□□□ -1.23
CD44-236ENST00000533222 CMTR1Q8N1G2 835 aaKnown RBP7.35□□□□□ -1.23
CD44-236ENST00000533222 NUDT16Q96DE0 195 aaKnown RBP7.35□□□□□ -1.23
CD44-236ENST00000533222 TRERF1Q96PN7 1200 aa7.35□□□□□ -1.23
CD44-236ENST00000533222 KCNMB2Q9Y691 235 aa7.35□□□□□ -1.23
CD44-236ENST00000533222 WASHC2CQ9Y4E1 1318 aa7.34□□□□□ -1.23
CD44-236ENST00000533222 SLC16A10Q8TF71 515 aa7.34□□□□□ -1.23
CD44-236ENST00000533222 CFHR5Q9BXR6 569 aa7.34□□□□□ -1.23
CD44-236ENST00000533222 KCNH4Q9UQ05 1017 aa7.34□□□□□ -1.23
CD44-236ENST00000533222 WFS1O76024 890 aa7.33□□□□□ -1.24
CD44-236ENST00000533222 NEFMP07197 916 aa7.33□□□□□ -1.24
CD44-236ENST00000533222 GMPRP36959 345 aa7.33□□□□□ -1.24
CD44-236ENST00000533222 KCNQ4P56696 695 aa7.33□□□□□ -1.24
CD44-236ENST00000533222 LCE2AQ5TA79 106 aaPredicted RBP7.33□□□□□ -1.24
CD44-236ENST00000533222 FOXR1Q6PIV2 292 aa7.33□□□□□ -1.24
CD44-236ENST00000533222 KRT25Q7Z3Z0 450 aa7.33□□□□□ -1.24
CD44-236ENST00000533222 TICAM2Q86XR7 235 aa7.33□□□□□ -1.24
CD44-236ENST00000533222 DHX37Q8IY37 1157 aaKnown RBP7.33□□□□□ -1.24
CD44-236ENST00000533222 IRF7Q92985 503 aa7.33□□□□□ -1.24
CD44-236ENST00000533222 GGNBP2Q9H3C7 697 aa7.33□□□□□ -1.24
CD44-236ENST00000533222 MARK1Q9P0L2 795 aa7.33□□□□□ -1.24
CD44-236ENST00000533222 NAP1L2Q9ULW6 460 aaPredicted RBP7.33□□□□□ -1.24
CD44-236ENST00000533222 MZF1P28698 734 aaPredicted RBP7.32□□□□□ -1.24
CD44-236ENST00000533222 SPEM2Q0P670 501 aa7.32□□□□□ -1.24
CD44-236ENST00000533222 ALKBH2Q6NS38 261 aa7.32□□□□□ -1.24
CD44-236ENST00000533222 ANP32BQ92688 251 aaKnown RBP7.32□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 33.5 ms