RNA–Protein interactions for RNA: ENST00000531032.5

VPS28-214, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 1 (best)

Gene VPS28, Length 573 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-214ENST00000531032 SYNE4Q8N205 404 aa14.92□□□□□ -0.02
VPS28-214ENST00000531032 TAF1DQ9H5J8 278 aaPredicted RBP14.92□□□□□ -0.02
VPS28-214ENST00000531032 CREBZFQ9NS37 354 aa14.92□□□□□ -0.02
VPS28-214ENST00000531032 ADAMTSL1Q8N6G6 1762 aa14.92□□□□□ -0.02
VPS28-214ENST00000531032 MYBBP1AQ9BQG0 1328 aaKnown RBP14.92□□□□□ -0.02
VPS28-214ENST00000531032 PROSER3Q2NL68 480 aa14.91□□□□□ -0.02
VPS28-214ENST00000531032 PARP10Q53GL7 1025 aa14.91□□□□□ -0.02
VPS28-214ENST00000531032 RPGRQ92834 1020 aaKnown RBP14.91□□□□□ -0.02
VPS28-214ENST00000531032 CRAMP1Q96RY5 1269 aa14.91□□□□□ -0.02
VPS28-214ENST00000531032 PASKQ96RG2 1323 aa14.91□□□□□ -0.02
VPS28-214ENST00000531032 ANKRD36CQ5JPF3 1778 aa14.9□□□□□ -0.02
VPS28-214ENST00000531032 COL4A5P29400 1685 aa14.9□□□□□ -0.02
VPS28-214ENST00000531032 EIF2S2P20042 333 aaKnown RBP14.9□□□□□ -0.02
VPS28-214ENST00000531032 GRIPAP1Q4V328 841 aa14.9□□□□□ -0.02
VPS28-214ENST00000531032 PPP1R42Q7Z4L9 355 aa14.9□□□□□ -0.02
VPS28-214ENST00000531032 RBM17Q96I25 401 aaKnown RBP14.9□□□□□ -0.02
VPS28-214ENST00000531032 COL13A1Q5TAT6 717 aaPredicted RBP14.89□□□□□ -0.03
VPS28-214ENST00000531032 C3orf67Q6ZVT6 689 aa14.89□□□□□ -0.03
VPS28-214ENST00000531032 GPC2Q8N158 579 aa14.89□□□□□ -0.03
VPS28-214ENST00000531032 HACL1Q9UJ83 578 aa14.89□□□□□ -0.03
VPS28-214ENST00000531032 RNF123Q5XPI4 1314 aa14.89□□□□□ -0.03
VPS28-214ENST00000531032 ANXA1P04083 346 aa14.88□□□□□ -0.03
VPS28-214ENST00000531032 DDX10Q13206 875 aaKnown RBP14.88□□□□□ -0.03
VPS28-214ENST00000531032 SLC10A5Q5PT55 438 aa14.88□□□□□ -0.03
VPS28-214ENST00000531032 JDP2Q8WYK2 163 aa14.88□□□□□ -0.03
VPS28-214ENST00000531032 UTP14AQ9BVJ6 771 aaKnown RBP14.88□□□□□ -0.03
VPS28-214ENST00000531032 CHL1O00533 1208 aa14.87□□□□□ -0.03
VPS28-214ENST00000531032 PPEF1O14829 653 aaPredicted RBP14.87□□□□□ -0.03
VPS28-214ENST00000531032 HSPA1AP0DMV8 641 aaKnown RBP14.87□□□□□ -0.03
VPS28-214ENST00000531032 HSPA1BP0DMV9 641 aaKnown RBP14.87□□□□□ -0.03
VPS28-214ENST00000531032 EPHX2P34913 555 aa14.87□□□□□ -0.03
VPS28-214ENST00000531032 SLC51AQ86UW1 340 aa14.87□□□□□ -0.03
VPS28-214ENST00000531032 CCDC146Q8IYE0 955 aa14.87□□□□□ -0.03
VPS28-214ENST00000531032 NLRP3Q96P20 1036 aa14.87□□□□□ -0.03
VPS28-214ENST00000531032 LAMB2P55268 1798 aa14.87□□□□□ -0.03
VPS28-214ENST00000531032 ITGBL1O95965 494 aaPredicted RBP14.86□□□□□ -0.03
VPS28-214ENST00000531032 EAPPQ56P03 285 aaPredicted RBP14.86□□□□□ -0.03
VPS28-214ENST00000531032 HSP90AB3PQ58FF7 597 aa14.86□□□□□ -0.03
VPS28-214ENST00000531032 COPS6Q7L5N1 327 aa14.86□□□□□ -0.03
VPS28-214ENST00000531032 PNMA8AQ86V59 439 aaPredicted RBP14.86□□□□□ -0.03
VPS28-214ENST00000531032 RUNDC1Q96C34 613 aa14.86□□□□□ -0.03
VPS28-214ENST00000531032 DDX21Q9NR30 783 aaKnown RBP eCLIP14.86□□□□□ -0.03
VPS28-214ENST00000531032 TRIM35Q9UPQ4 493 aa14.86□□□□□ -0.03
VPS28-214ENST00000531032 LTBP1Q14766 1721 aa14.86□□□□□ -0.03
VPS28-214ENST00000531032 CNTNAP1P78357 1384 aa14.85□□□□□ -0.03
VPS28-214ENST00000531032 EIF6P56537 245 aaKnown RBP14.85□□□□□ -0.03
VPS28-214ENST00000531032 NEUROD2Q15784 382 aa14.85□□□□□ -0.03
VPS28-214ENST00000531032 NLRP10Q86W26 655 aa14.85□□□□□ -0.03
VPS28-214ENST00000531032 XAGE3Q8WTP9 111 aa14.85□□□□□ -0.03
VPS28-214ENST00000531032 NECTIN2Q92692 538 aa14.85□□□□□ -0.03
VPS28-214ENST00000531032 MKRN1Q9UHC7 482 aaKnown RBP14.85□□□□□ -0.03
VPS28-214ENST00000531032 ATP6V0A2Q9Y487 856 aa14.85□□□□□ -0.03
VPS28-214ENST00000531032 HOXB7P09629 217 aa14.84□□□□□ -0.03
VPS28-214ENST00000531032 AIMP1Q12904 312 aaKnown RBP14.84□□□□□ -0.03
VPS28-214ENST00000531032 WDR43Q15061 677 aaKnown RBP eCLIP14.84□□□□□ -0.03
VPS28-214ENST00000531032 KRT24Q2M2I5 525 aa14.84□□□□□ -0.03
VPS28-214ENST00000531032 LARGE2Q8N3Y3 721 aa14.84□□□□□ -0.03
VPS28-214ENST00000531032 ABCC4O15439 1325 aa14.84□□□□□ -0.03
VPS28-214ENST00000531032 TMEM88BA6NKF7 163 aa14.83□□□□□ -0.04
VPS28-214ENST00000531032 TCERG1O14776 1098 aaKnown RBP14.83□□□□□ -0.04
VPS28-214ENST00000531032 TCIRG1Q13488 830 aa14.83□□□□□ -0.04
VPS28-214ENST00000531032 VPS33BQ9H267 617 aa14.83□□□□□ -0.04
VPS28-214ENST00000531032 ADAMTS8Q9UP79 889 aa14.83□□□□□ -0.04
VPS28-214ENST00000531032 CLEC11AQ9Y240 323 aa14.83□□□□□ -0.04
VPS28-214ENST00000531032 SCNN1DP51172 638 aa14.82□□□□□ -0.04
VPS28-214ENST00000531032 NIM1KQ8IY84 436 aa14.82□□□□□ -0.04
VPS28-214ENST00000531032 CNTROBQ8N137 903 aa14.82□□□□□ -0.04
VPS28-214ENST00000531032 RTFDC1Q9BY42 306 aaPredicted RBP14.82□□□□□ -0.04
VPS28-214ENST00000531032 CHPF2Q9P2E5 772 aa14.82□□□□□ -0.04
VPS28-214ENST00000531032 GJA3Q9Y6H8 435 aa14.82□□□□□ -0.04
VPS28-214ENST00000531032 PPIP5K2O43314 1243 aa14.81□□□□□ -0.04
VPS28-214ENST00000531032 BBOX1O75936 387 aa14.81□□□□□ -0.04
VPS28-214ENST00000531032 HCLS1P14317 486 aaPredicted RBP14.81□□□□□ -0.04
VPS28-214ENST00000531032 LMOD1P29536 600 aaPredicted RBP14.81□□□□□ -0.04
VPS28-214ENST00000531032 AOC3Q16853 763 aa14.81□□□□□ -0.04
VPS28-214ENST00000531032 HDGFL1Q5TGJ6 251 aa14.81□□□□□ -0.04
VPS28-214ENST00000531032 MAP1SQ66K74 1059 aaPredicted RBP14.81□□□□□ -0.04
VPS28-214ENST00000531032 TMX4Q9H1E5 349 aaPredicted RBP14.81□□□□□ -0.04
VPS28-214ENST00000531032 TRMT112Q9UI30 125 aaKnown RBP14.81□□□□□ -0.04
VPS28-214ENST00000531032 LAS1LQ9Y4W2 734 aaKnown RBP14.81□□□□□ -0.04
VPS28-214ENST00000531032 SH3TC1Q8TE82 1336 aa14.81□□□□□ -0.04
VPS28-214ENST00000531032 LRRC37AA6NMS7 1700 aa14.8□□□□□ -0.04
VPS28-214ENST00000531032 DDX60Q8IY21 1712 aaKnown RBP14.8□□□□□ -0.04
VPS28-214ENST00000531032 SP8Q8IXZ3 490 aa14.8□□□□□ -0.04
VPS28-214ENST00000531032 TNS4Q8IZW8 715 aa14.8□□□□□ -0.04
VPS28-214ENST00000531032 SUPT20HQ8NEM7 779 aa14.8□□□□□ -0.04
VPS28-214ENST00000531032 PLBD2Q8NHP8 589 aa14.8□□□□□ -0.04
VPS28-214ENST00000531032 CFAP44Q96MT7 982 aa14.8□□□□□ -0.04
VPS28-214ENST00000531032 EPS15P42566 896 aa14.79□□□□□ -0.04
VPS28-214ENST00000531032 GRAPQ13588 217 aa14.79□□□□□ -0.04
VPS28-214ENST00000531032 DDX46Q7L014 1031 aaKnown RBP14.79□□□□□ -0.04
VPS28-214ENST00000531032 GRAPLQ8TC17 118 aaPredicted RBP14.79□□□□□ -0.04
VPS28-214ENST00000531032 PRKRIP1Q9H875 184 aaPredicted RBP14.79□□□□□ -0.04
VPS28-214ENST00000531032 DBF4Q9UBU7 674 aaPredicted RBP14.79□□□□□ -0.04
VPS28-214ENST00000531032 TAF1P21675 1872 aa14.78□□□□□ -0.04
VPS28-214ENST00000531032 DUOX1Q9NRD9 1551 aa14.78□□□□□ -0.04
VPS28-214ENST00000531032 RASSF10A6NK89 507 aa14.78□□□□□ -0.04
VPS28-214ENST00000531032 VEGFBP49765 207 aa14.78□□□□□ -0.04
VPS28-214ENST00000531032 DPP8Q6V1X1 898 aaPredicted RBP14.78□□□□□ -0.04
VPS28-214ENST00000531032 ANKRD13DQ6ZTN6 518 aa14.78□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 22.7 ms