RNA–Protein interactions for RNA: ENST00000528142.5

VPS28-209, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 1,821 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-209ENST00000528142 TTC41PQ6P2S7 1318 aa25.38■■□□□ 1.65
VPS28-209ENST00000528142 KCNQ2O43526 872 aa25.37■■□□□ 1.65
VPS28-209ENST00000528142 KIF6Q6ZMV9 814 aa25.37■■□□□ 1.65
VPS28-209ENST00000528142 USP26Q9BXU7 913 aa25.37■■□□□ 1.65
VPS28-209ENST00000528142 ZNF330Q9Y3S2 320 aaPredicted RBP25.37■■□□□ 1.65
VPS28-209ENST00000528142 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP25.37■■□□□ 1.65
VPS28-209ENST00000528142 PTPN12Q05209 780 aaKnown RBP25.37■■□□□ 1.65
VPS28-209ENST00000528142 MAP3K15Q6ZN16 1313 aa25.36■■□□□ 1.65
VPS28-209ENST00000528142 TRIM6-TRIM34B2RNG4 842 aa25.36■■□□□ 1.65
VPS28-209ENST00000528142 PTF1AQ7RTS3 328 aa25.36■■□□□ 1.65
VPS28-209ENST00000528142 SEPT12Q8IYM1 358 aa25.36■■□□□ 1.65
VPS28-209ENST00000528142 ZBTB1Q9Y2K1 713 aa25.36■■□□□ 1.65
VPS28-209ENST00000528142 TJP1Q07157 1748 aa25.36■■□□□ 1.65
VPS28-209ENST00000528142 RILPL2Q969X0 211 aa25.35■■□□□ 1.65
VPS28-209ENST00000528142 ERC2O15083 957 aa25.35■■□□□ 1.65
VPS28-209ENST00000528142 CHMLP26374 656 aa25.35■■□□□ 1.65
VPS28-209ENST00000528142 LMBR1LQ6UX01 489 aa25.35■■□□□ 1.65
VPS28-209ENST00000528142 SIL1Q9H173 461 aa25.35■■□□□ 1.65
VPS28-209ENST00000528142 GIGYF2Q6Y7W6 1299 aaKnown RBP25.34■■□□□ 1.65
VPS28-209ENST00000528142 EAF2Q96CJ1 260 aaPredicted RBP25.34■■□□□ 1.65
VPS28-209ENST00000528142 IFIT2P09913 472 aaKnown RBP25.33■■□□□ 1.65
VPS28-209ENST00000528142 AACSQ86V21 672 aa25.33■■□□□ 1.65
VPS28-209ENST00000528142 ECHDC1Q9NTX5 307 aa25.33■■□□□ 1.65
VPS28-209ENST00000528142 GLRX3O76003 335 aaKnown RBP25.33■■□□□ 1.64
VPS28-209ENST00000528142 REC8O95072 547 aa25.33■■□□□ 1.64
VPS28-209ENST00000528142 IL6STP40189 918 aaPredicted RBP25.33■■□□□ 1.64
VPS28-209ENST00000528142 SNX21Q969T3 373 aa25.32■■□□□ 1.64
VPS28-209ENST00000528142 ESYT1Q9BSJ8 1104 aa25.32■■□□□ 1.64
VPS28-209ENST00000528142 HLFQ16534 295 aa25.31■■□□□ 1.64
VPS28-209ENST00000528142 RTL5Q5HYW3 569 aaPredicted RBP25.31■■□□□ 1.64
VPS28-209ENST00000528142 RGS17Q9UGC6 210 aaPredicted RBP25.31■■□□□ 1.64
VPS28-209ENST00000528142 BRWD3Q6RI45 1802 aa25.31■■□□□ 1.64
VPS28-209ENST00000528142 LOC102724428A0A0B4J2F2 783 aa25.3■■□□□ 1.64
VPS28-209ENST00000528142 SIK1P57059 783 aa25.3■■□□□ 1.64
VPS28-209ENST00000528142 INTS5Q6P9B9 1019 aaKnown RBP25.3■■□□□ 1.64
VPS28-209ENST00000528142 GPATCH3Q96I76 525 aa25.3■■□□□ 1.64
VPS28-209ENST00000528142 PCCAP05165 728 aaPredicted RBP25.29■■□□□ 1.64
VPS28-209ENST00000528142 PALLDQ8WX93 1383 aa25.28■■□□□ 1.64
VPS28-209ENST00000528142 ERVV-1B6SEH8 477 aa25.28■■□□□ 1.64
VPS28-209ENST00000528142 MAP4K4O95819 1239 aaPredicted RBP25.28■■□□□ 1.64
VPS28-209ENST00000528142 ATP6V1AP38606 617 aa25.28■■□□□ 1.64
VPS28-209ENST00000528142 HSP90AB3PQ58FF7 597 aa25.28■■□□□ 1.64
VPS28-209ENST00000528142 EIF5P55010 431 aaKnown RBP25.28■■□□□ 1.64
VPS28-209ENST00000528142 CNTROBQ8N137 903 aa25.28■■□□□ 1.64
VPS28-209ENST00000528142 SMARCC1Q92922 1105 aaPredicted RBP25.28■■□□□ 1.64
VPS28-209ENST00000528142 ARXQ96QS3 562 aa25.28■■□□□ 1.64
VPS28-209ENST00000528142 CCDC8Q9H0W5 538 aaPredicted RBP25.28■■□□□ 1.64
VPS28-209ENST00000528142 ITPK1Q13572 414 aa25.27■■□□□ 1.64
VPS28-209ENST00000528142 ZNF772Q68DY9 489 aaPredicted RBP25.27■■□□□ 1.64
VPS28-209ENST00000528142 ZBTB38Q8NAP3 1195 aaPredicted RBP25.27■■□□□ 1.64
VPS28-209ENST00000528142 PLA2G12BQ9BX93 195 aa25.27■■□□□ 1.64
VPS28-209ENST00000528142 CCDC87Q9NVE4 849 aa25.27■■□□□ 1.64
VPS28-209ENST00000528142 NLRP10Q86W26 655 aa25.26■■□□□ 1.63
VPS28-209ENST00000528142 TLR7Q9NYK1 1049 aaKnown RBP25.26■■□□□ 1.63
VPS28-209ENST00000528142 CICQ96RK0 1608 aaPredicted RBP25.26■■□□□ 1.63
VPS28-209ENST00000528142 SBF2Q86WG5 1849 aa25.26■■□□□ 1.63
VPS28-209ENST00000528142 CRKLP46109 303 aaKnown RBP25.26■■□□□ 1.63
VPS28-209ENST00000528142 TFCP2Q12800 502 aa25.26■■□□□ 1.63
VPS28-209ENST00000528142 DZIP3Q86Y13 1208 aaKnown RBP25.26■■□□□ 1.63
VPS28-209ENST00000528142 CHMP3Q9Y3E7 222 aa25.26■■□□□ 1.63
VPS28-209ENST00000528142 HSCBQ8IWL3 235 aa25.25■■□□□ 1.63
VPS28-209ENST00000528142 TNNI3KQ59H18 835 aa25.24■■□□□ 1.63
VPS28-209ENST00000528142 FAM89AQ96GI7 184 aa25.24■■□□□ 1.63
VPS28-209ENST00000528142 TBC1D2BQ9UPU7 963 aa25.24■■□□□ 1.63
VPS28-209ENST00000528142 FPGT-TNNI3KV9GXZ4 949 aa25.24■■□□□ 1.63
VPS28-209ENST00000528142 NHSQ6T4R5 1651 aa25.24■■□□□ 1.63
VPS28-209ENST00000528142 ATG9AQ7Z3C6 839 aa25.23■■□□□ 1.63
VPS28-209ENST00000528142 ANTXR1Q9H6X2 564 aa25.23■■□□□ 1.63
VPS28-209ENST00000528142 CDHR2Q9BYE9 1310 aa25.23■■□□□ 1.63
VPS28-209ENST00000528142 RBM6P78332 1123 aaKnown RBP25.23■■□□□ 1.63
VPS28-209ENST00000528142 RREB1Q92766 1687 aa25.22■■□□□ 1.63
VPS28-209ENST00000528142 GPTP24298 496 aa25.22■■□□□ 1.63
VPS28-209ENST00000528142 IL25Q9H293 177 aa25.22■■□□□ 1.63
VPS28-209ENST00000528142 BTAF1O14981 1849 aa25.22■■□□□ 1.63
VPS28-209ENST00000528142 CSF1RP07333 972 aa25.21■■□□□ 1.63
VPS28-209ENST00000528142 RABEP1Q15276 862 aa25.21■■□□□ 1.63
VPS28-209ENST00000528142 EPB41L2O43491 1005 aaKnown RBP25.21■■□□□ 1.63
VPS28-209ENST00000528142 ZNF34Q8IZ26 560 aa25.21■■□□□ 1.63
VPS28-209ENST00000528142 EVI5LQ96CN4 794 aa25.21■■□□□ 1.63
VPS28-209ENST00000528142 DBNLQ9UJU6 430 aaKnown RBP25.21■■□□□ 1.63
VPS28-209ENST00000528142 CD2BP2O95400 341 aaKnown RBP25.2■■□□□ 1.62
VPS28-209ENST00000528142 POTEAQ6S8J7 498 aa25.2■■□□□ 1.62
VPS28-209ENST00000528142 EYA2O00167 538 aa25.19■■□□□ 1.62
VPS28-209ENST00000528142 SGSM2O43147 1006 aa25.19■■□□□ 1.62
VPS28-209ENST00000528142 CIAO1O76071 339 aa25.19■■□□□ 1.62
VPS28-209ENST00000528142 IL15P40933 162 aaPredicted RBP25.19■■□□□ 1.62
VPS28-209ENST00000528142 NBR1Q14596 966 aa25.19■■□□□ 1.62
VPS28-209ENST00000528142 EP400Q96L91 3159 aa25.19■■□□□ 1.62
VPS28-209ENST00000528142 SYNE4Q8N205 404 aa25.19■■□□□ 1.62
VPS28-209ENST00000528142 ZNF594Q96JF6 807 aaPredicted RBP25.19■■□□□ 1.62
VPS28-209ENST00000528142 SLKQ9H2G2 1235 aaPredicted RBP25.18■■□□□ 1.62
VPS28-209ENST00000528142 GPR108Q9NPR9 543 aa25.18■■□□□ 1.62
VPS28-209ENST00000528142 ANO2Q9NQ90 1003 aa25.18■■□□□ 1.62
VPS28-209ENST00000528142 UBN2Q6ZU65 1347 aa25.18■■□□□ 1.62
VPS28-209ENST00000528142 LRRC24Q50LG9 513 aa25.17■■□□□ 1.62
VPS28-209ENST00000528142 KRT27Q7Z3Y8 459 aa25.17■■□□□ 1.62
VPS28-209ENST00000528142 CAMTA2O94983 1202 aa25.16■■□□□ 1.62
VPS28-209ENST00000528142 ATP5JP18859 108 aa25.16■■□□□ 1.62
VPS28-209ENST00000528142 CCDC57Q2TAC2 916 aa25.16■■□□□ 1.62
VPS28-209ENST00000528142 BOLA2Q9H3K6 86 aa25.16■■□□□ 1.62
Retrieved 100 of 20,778 RNA–protein pairs in 51.7 ms