RNA–Protein interactions for RNA: ENST00000527823.5

USP48-212, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 4

Gene USP48, Length 554 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-212ENST00000527823 NBPF3Q9H094 633 aa11.42□□□□□ -0.58
USP48-212ENST00000527823 INSRP06213 1382 aa11.41□□□□□ -0.58
USP48-212ENST00000527823 FLT4P35916 1363 aa11.41□□□□□ -0.58
USP48-212ENST00000527823 ADAMTS7Q9UKP4 1686 aa11.41□□□□□ -0.58
USP48-212ENST00000527823 HRO43593 1189 aa11.41□□□□□ -0.58
USP48-212ENST00000527823 MMP10P09238 476 aa11.41□□□□□ -0.58
USP48-212ENST00000527823 TATP17735 454 aaPredicted RBP11.41□□□□□ -0.58
USP48-212ENST00000527823 PARP9Q8IXQ6 854 aa11.41□□□□□ -0.58
USP48-212ENST00000527823 REPIN1Q9BWE0 567 aaKnown RBP11.41□□□□□ -0.58
USP48-212ENST00000527823 TJP1Q07157 1748 aa11.4□□□□□ -0.58
USP48-212ENST00000527823 ITPK1Q13572 414 aa11.4□□□□□ -0.58
USP48-212ENST00000527823 PIGBQ92521 554 aa11.4□□□□□ -0.58
USP48-212ENST00000527823 SMARCC1Q92922 1105 aaPredicted RBP11.4□□□□□ -0.58
USP48-212ENST00000527823 CARD11Q9BXL7 1154 aa11.4□□□□□ -0.58
USP48-212ENST00000527823 LOC102724428A0A0B4J2F2 783 aa11.39□□□□□ -0.59
USP48-212ENST00000527823 DNAJB2P25686 324 aa11.39□□□□□ -0.59
USP48-212ENST00000527823 SIK1P57059 783 aa11.39□□□□□ -0.59
USP48-212ENST00000527823 MRPL50Q8N5N7 158 aaKnown RBP11.39□□□□□ -0.59
USP48-212ENST00000527823 BCS1LQ9Y276 419 aa11.39□□□□□ -0.59
USP48-212ENST00000527823 CLCN1P35523 988 aa11.38□□□□□ -0.59
USP48-212ENST00000527823 HSP90AB2PQ58FF8 381 aa11.38□□□□□ -0.59
USP48-212ENST00000527823 PUS7Q96PZ0 661 aaKnown RBP11.38□□□□□ -0.59
USP48-212ENST00000527823 TESK2Q96S53 571 aa11.38□□□□□ -0.59
USP48-212ENST00000527823 KDM4CQ9H3R0 1056 aa11.38□□□□□ -0.59
USP48-212ENST00000527823 KIF24Q5T7B8 1368 aa11.38□□□□□ -0.59
USP48-212ENST00000527823 AFDNP55196 1824 aaKnown RBP11.37□□□□□ -0.59
USP48-212ENST00000527823 A0A0G2JLW4 131 aa11.37□□□□□ -0.59
USP48-212ENST00000527823 HMGB2P26583 209 aaKnown RBP11.37□□□□□ -0.59
USP48-212ENST00000527823 PRELPP51888 382 aa11.37□□□□□ -0.59
USP48-212ENST00000527823 GIGYF2Q6Y7W6 1299 aaKnown RBP11.37□□□□□ -0.59
USP48-212ENST00000527823 TNS4Q8IZW8 715 aa11.37□□□□□ -0.59
USP48-212ENST00000527823 TMUB1Q9BVT8 246 aa11.37□□□□□ -0.59
USP48-212ENST00000527823 GGNBP2Q9H3C7 697 aa11.37□□□□□ -0.59
USP48-212ENST00000527823 GPCPD1Q9NPB8 672 aa11.37□□□□□ -0.59
USP48-212ENST00000527823 CCDC88AQ3V6T2 1871 aa11.37□□□□□ -0.59
USP48-212ENST00000527823 DPEP1P16444 411 aa11.36□□□□□ -0.59
USP48-212ENST00000527823 TGFB2P61812 414 aa11.36□□□□□ -0.59
USP48-212ENST00000527823 NEUROD1Q13562 356 aa11.36□□□□□ -0.59
USP48-212ENST00000527823 C9orf131Q5VYM1 1079 aa11.36□□□□□ -0.59
USP48-212ENST00000527823 LAPTM4BQ86VI4 370 aa11.36□□□□□ -0.59
USP48-212ENST00000527823 TMEM134Q9H6X4 195 aa11.36□□□□□ -0.59
USP48-212ENST00000527823 NRXN2Q9P2S2 1712 aa11.35□□□□□ -0.59
USP48-212ENST00000527823 FSTL1Q12841 308 aa11.35□□□□□ -0.59
USP48-212ENST00000527823 ARHGAP27Q6ZUM4 889 aa11.35□□□□□ -0.59
USP48-212ENST00000527823 ASAP1Q9ULH1 1129 aa11.35□□□□□ -0.59
USP48-212ENST00000527823 KDM6AO15550 1401 aaPredicted RBP11.35□□□□□ -0.59
USP48-212ENST00000527823 FYB1O15117 783 aa11.34□□□□□ -0.59
USP48-212ENST00000527823 SWT1Q5T5J6 900 aaKnown RBP11.34□□□□□ -0.59
USP48-212ENST00000527823 ZFRQ96KR1 1074 aaKnown RBP11.34□□□□□ -0.59
USP48-212ENST00000527823 DAXXQ9UER7 740 aaPredicted RBP11.34□□□□□ -0.59
USP48-212ENST00000527823 VIRMAQ69YN4 1812 aaKnown RBP11.34□□□□□ -0.59
USP48-212ENST00000527823 TONSLQ96HA7 1378 aa11.33□□□□□ -0.6
USP48-212ENST00000527823 KCNA3P22001 575 aa11.33□□□□□ -0.6
USP48-212ENST00000527823 ATP6V1AP38606 617 aa11.33□□□□□ -0.6
USP48-212ENST00000527823 SAMD7Q7Z3H4 446 aa11.33□□□□□ -0.6
USP48-212ENST00000527823 C16orf71Q8IYS4 520 aaPredicted RBP11.33□□□□□ -0.6
USP48-212ENST00000527823 DCAF5Q96JK2 942 aa11.33□□□□□ -0.6
USP48-212ENST00000527823 SLC4A9Q96Q91 983 aa11.33□□□□□ -0.6
USP48-212ENST00000527823 TMOD3Q9NYL9 352 aa11.33□□□□□ -0.6
USP48-212ENST00000527823 HSPA1AP0DMV8 641 aaKnown RBP11.32□□□□□ -0.6
USP48-212ENST00000527823 HSPA1BP0DMV9 641 aaKnown RBP11.32□□□□□ -0.6
USP48-212ENST00000527823 MS4A1P11836 297 aa11.32□□□□□ -0.6
USP48-212ENST00000527823 GYS1P13807 737 aa11.32□□□□□ -0.6
USP48-212ENST00000527823 SSTR3P32745 418 aaPredicted RBP11.32□□□□□ -0.6
USP48-212ENST00000527823 ATG3Q9NT62 314 aa11.32□□□□□ -0.6
USP48-212ENST00000527823 CCDC87Q9NVE4 849 aa11.32□□□□□ -0.6
USP48-212ENST00000527823 EMILIN1Q9Y6C2 1016 aa11.32□□□□□ -0.6
USP48-212ENST00000527823 KDM2BQ8NHM5 1336 aa11.32□□□□□ -0.6
USP48-212ENST00000527823 CNTNAP4Q9C0A0 1308 aa11.32□□□□□ -0.6
USP48-212ENST00000527823 COL11A2P13942 1736 aaPredicted RBP11.32□□□□□ -0.6
USP48-212ENST00000527823 DICER1Q9UPY3 1922 aaKnown RBP11.31□□□□□ -0.6
USP48-212ENST00000527823 GOLGA8CPA6NN73 597 aa11.31□□□□□ -0.6
USP48-212ENST00000527823 FAM217BQ9NTX9 383 aaPredicted RBP11.31□□□□□ -0.6
USP48-212ENST00000527823 RNF181Q9P0P0 153 aa11.31□□□□□ -0.6
USP48-212ENST00000527823 RTCBQ9Y3I0 505 aaKnown RBP11.31□□□□□ -0.6
USP48-212ENST00000527823 SCN11AQ9UI33 1791 aa11.31□□□□□ -0.6
USP48-212ENST00000527823 ST20-MTHFSA0A0A6YYL1 179 aa11.3□□□□□ -0.6
USP48-212ENST00000527823 DDX11L8A8MPP1 907 aa11.3□□□□□ -0.6
USP48-212ENST00000527823 PHKG2P15735 406 aa11.3□□□□□ -0.6
USP48-212ENST00000527823 TMF1P82094 1093 aa11.3□□□□□ -0.6
USP48-212ENST00000527823 NLGN1Q8N2Q7 840 aa11.3□□□□□ -0.6
USP48-212ENST00000527823 ANKRD31Q8N7Z5 1873 aa11.29□□□□□ -0.6
USP48-212ENST00000527823 RASSF7Q02833 373 aa11.29□□□□□ -0.6
USP48-212ENST00000527823 DDR1Q08345 913 aa11.29□□□□□ -0.6
USP48-212ENST00000527823 SMC1BQ8NDV3 1235 aa11.29□□□□□ -0.6
USP48-212ENST00000527823 FAM117AQ9C073 453 aa11.29□□□□□ -0.6
USP48-212ENST00000527823 RRAGCQ9HB90 399 aa11.29□□□□□ -0.6
USP48-212ENST00000527823 SPG7Q9UQ90 795 aa11.29□□□□□ -0.6
USP48-212ENST00000527823 CACNA1SQ13698 1873 aa11.29□□□□□ -0.6
USP48-212ENST00000527823 SCN7AQ01118 1682 aa11.28□□□□□ -0.6
USP48-212ENST00000527823 RNF40O75150 1001 aa11.28□□□□□ -0.6
USP48-212ENST00000527823 TRAPPC3LQ5T215 181 aa11.28□□□□□ -0.6
USP48-212ENST00000527823 IL27Q8NEV9 243 aa11.28□□□□□ -0.6
USP48-212ENST00000527823 PARP3Q9Y6F1 533 aa11.28□□□□□ -0.6
USP48-212ENST00000527823 ZC3H4Q9UPT8 1303 aaKnown RBP11.28□□□□□ -0.6
USP48-212ENST00000527823 FER1L6Q2WGJ9 1857 aa11.27□□□□□ -0.6
USP48-212ENST00000527823 CHRNA5P30532 468 aa11.27□□□□□ -0.61
USP48-212ENST00000527823 DALRD3Q5D0E6 543 aaKnown RBP11.27□□□□□ -0.61
USP48-212ENST00000527823 PIM2Q9P1W9 311 aa11.27□□□□□ -0.61
USP48-212ENST00000527823 SRP68Q9UHB9 627 aaKnown RBP11.27□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 44.1 ms